Wall clock time and date at job start Mon Mar 30 2020 02:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39755 * 125.56127 * 2 1 4 4 H 0.97004 * 125.01594 * 0.02562 * 3 2 1 5 5 C 1.35505 * 109.96476 * 179.70183 * 3 2 1 6 6 C 1.50701 * 125.88920 * 180.31681 * 5 3 2 7 7 C 1.52994 * 109.47021 * 174.59685 * 6 5 3 8 8 C 1.53006 * 109.47016 * 294.59128 * 6 5 3 9 9 C 1.52990 * 109.47421 * 54.59234 * 6 5 3 10 10 C 1.39164 * 108.22135 * 0.44278 * 5 3 2 11 11 C 1.40956 * 126.84374 * 179.82898 * 10 5 3 12 12 H 1.08000 * 120.00524 * 319.28094 * 11 10 5 13 13 C 1.39764 * 119.99798 * 139.27964 * 11 10 5 14 14 N 1.31063 * 120.00336 * 342.92409 * 13 11 10 15 15 Si 1.86801 * 119.99689 * 162.64890 * 13 11 10 16 16 H 1.48503 * 109.46989 * 180.27291 * 15 13 11 17 17 H 1.48500 * 109.47500 * 300.27558 * 15 13 11 18 18 H 1.48503 * 109.47490 * 60.27459 * 15 13 11 19 19 C 1.34863 * 125.56469 * 179.97438 * 2 1 3 20 20 O 1.21627 * 126.69055 * 0.05855 * 19 2 1 21 21 H 1.09000 * 109.46982 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47745 * 299.99648 * 1 2 3 23 23 H 1.09004 * 109.47393 * 60.00222 * 1 2 3 24 24 H 1.09004 * 109.47766 * 70.40521 * 7 6 5 25 25 H 1.08999 * 109.47162 * 190.41215 * 7 6 5 26 26 H 1.09001 * 109.47237 * 310.40632 * 7 6 5 27 27 H 1.08998 * 109.46844 * 59.99946 * 8 6 5 28 28 H 1.08990 * 109.46973 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47175 * 300.00528 * 8 6 5 30 30 H 1.08999 * 109.47572 * 60.00232 * 9 6 5 31 31 H 1.09000 * 109.47636 * 180.02562 * 9 6 5 32 32 H 1.09002 * 109.47518 * 299.99888 * 9 6 5 33 33 H 0.97001 * 119.99934 * 353.97945 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2777 1.1369 0.0000 4 1 1.9552 2.0517 0.0004 5 6 3.5829 0.7726 0.0066 6 6 4.7620 1.7110 0.0155 7 6 6.0545 0.9046 0.1569 8 6 4.7947 2.5013 -1.2942 9 6 4.6340 2.6798 1.1927 10 6 3.6467 -0.6176 0.0009 11 6 4.8122 -1.4102 0.0014 12 1 5.6595 -1.1252 -0.6047 13 6 4.8716 -2.5651 0.7863 14 7 4.0115 -2.7411 1.7594 15 14 6.1720 -3.8616 0.4434 16 1 6.0184 -4.9831 1.4046 17 1 6.0098 -4.3712 -0.9420 18 1 7.5217 -3.2612 0.5950 19 6 2.2494 -1.0971 0.0005 20 8 1.8787 -2.2555 0.0000 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 6.2407 0.3521 -0.7641 25 1 6.8864 1.5823 0.3487 26 1 5.9572 0.2049 0.9870 27 1 3.8739 3.0758 -1.3950 28 1 5.6478 3.1797 -1.2880 29 1 4.8859 1.8111 -2.1329 30 1 4.6107 2.1169 2.1257 31 1 5.4866 3.3589 1.1989 32 1 3.7132 3.2544 1.0919 33 1 3.3904 -2.0331 1.9917 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261005340.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:52 Heat of formation + Delta-G solvation = 26.491664 kcal Electronic energy + Delta-G solvation = -16309.878652 eV Core-core repulsion = 13758.655257 eV Total energy + Delta-G solvation = -2551.223396 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.87600 -36.62610 -35.23294 -33.25022 -31.23439 -28.94425 -26.74424 -26.53796 -25.77697 -24.24169 -20.90381 -19.45180 -18.41991 -17.44615 -15.88549 -14.88918 -14.46817 -14.30391 -13.75214 -13.49042 -13.47695 -13.06375 -12.47179 -12.29235 -12.05209 -11.97077 -11.71997 -11.16531 -10.97321 -10.81838 -10.78912 -10.41840 -10.14321 -10.11084 -9.96555 -9.28827 -8.57011 -8.27452 -7.77663 -6.72274 -6.28541 -3.74545 2.91860 3.06596 3.42587 3.51477 3.64062 4.45052 4.59777 4.96036 5.47364 5.49568 5.52760 5.62960 5.66537 5.71582 5.91357 6.03044 6.07027 6.20192 6.29270 6.46321 6.56986 6.64607 6.71506 7.03131 7.05280 7.29983 7.40125 7.59920 8.32373 8.39142 8.70405 8.91160 9.06651 9.47085 9.70089 10.76071 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.021819 B = 0.014148 C = 0.009478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.972919 B = 1978.614757 C = 2953.601558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.431 5.431 3 N -0.524 5.524 4 H 0.411 0.589 5 C -0.027 4.027 6 C 0.032 3.968 7 C -0.128 4.128 8 C -0.138 4.138 9 C -0.135 4.135 10 C -0.063 4.063 11 C -0.514 4.514 12 H 0.079 0.921 13 C 0.034 3.966 14 N -0.820 5.820 15 Si 1.064 2.936 16 H -0.281 1.281 17 H -0.283 1.283 18 H -0.282 1.282 19 C 0.509 3.491 20 O -0.550 6.550 21 H 0.092 0.908 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.028 0.972 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 10.157 -2.246 10.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.254 5.254 3 N -0.254 5.254 4 H 0.252 0.748 5 C -0.133 4.133 6 C 0.030 3.970 7 C -0.185 4.185 8 C -0.196 4.196 9 C -0.192 4.192 10 C -0.075 4.075 11 C -0.547 4.547 12 H 0.096 0.904 13 C -0.184 4.184 14 N -0.445 5.445 15 Si 0.891 3.109 16 H -0.206 1.206 17 H -0.209 1.209 18 H -0.209 1.209 19 C 0.305 3.695 20 O -0.428 6.428 21 H 0.110 0.890 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.047 0.953 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.213 7.927 -1.751 8.121 hybrid contribution -1.197 2.185 -0.606 2.564 sum -1.410 10.112 -2.357 10.478 Atomic orbital electron populations 1.21539 0.77871 1.03940 1.00445 1.47885 1.02467 1.00686 1.74388 1.42281 1.00563 0.98733 1.83814 0.74833 1.20413 0.81547 0.94080 1.17244 1.18653 0.92405 0.92380 0.93557 1.22148 0.93002 0.98943 1.04406 1.21950 1.00007 0.99353 0.98256 1.21866 0.99964 0.98346 0.99051 1.18990 0.91320 0.90005 1.07192 1.19490 0.99279 1.08964 1.26949 0.90371 1.26506 1.00052 0.98825 0.92975 1.70417 1.14952 1.36183 1.22994 0.83648 0.74614 0.75933 0.76717 1.20607 1.20880 1.20862 1.19814 0.88390 0.82953 0.78318 1.90706 1.80212 1.16579 1.55300 0.88975 0.92791 0.92940 0.91933 0.95259 0.89591 0.94021 0.93370 0.92674 0.92426 0.93292 0.94073 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.73 11.49 59.85 0.69 2.42 16 2 N -0.43 -9.45 3.99 -68.05 -0.27 -9.73 16 3 N -0.52 -10.31 7.08 34.27 0.24 -10.07 16 4 H 0.41 6.50 8.94 -182.85 -1.63 4.87 16 5 C -0.03 -0.60 5.74 -80.63 -0.46 -1.06 16 6 C 0.03 0.58 0.99 -155.66 -0.15 0.43 16 7 C -0.13 -2.43 6.89 37.15 0.26 -2.18 16 8 C -0.14 -2.14 8.44 37.16 0.31 -1.83 16 9 C -0.13 -2.10 8.42 37.15 0.31 -1.79 16 10 C -0.06 -1.68 5.11 -104.65 -0.54 -2.22 16 11 C -0.51 -14.05 6.42 -37.98 -0.24 -14.29 16 12 H 0.08 2.02 5.19 -52.49 -0.27 1.75 16 13 C 0.03 0.95 5.19 -17.31 -0.09 0.86 16 14 N -0.82 -24.90 12.65 55.54 0.70 -24.20 16 15 Si 1.06 24.50 29.96 -169.99 -5.09 19.41 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 C 0.51 13.95 7.01 -12.34 -0.09 13.86 16 20 O -0.55 -16.92 16.36 5.25 0.09 -16.84 16 21 H 0.09 1.60 7.73 -51.93 -0.40 1.20 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 1.25 6.12 -51.93 -0.32 0.93 16 25 H 0.03 0.47 8.11 -51.93 -0.42 0.05 16 26 H 0.09 1.90 6.36 -51.93 -0.33 1.57 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 33 H 0.28 8.85 6.70 -40.82 -0.27 8.58 16 LS Contribution 271.33 15.07 4.09 4.09 Total: -1.00 -33.31 271.33 -6.08 -39.39 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.83 Total: 3.74 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 0.00 Total: -5.80 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.67 Total: -43.99 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.09 Total: -16.84 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.09 Total: 19.41 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.31 -6.08 -39.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005340.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.882 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds