Wall clock time and date at job start Mon Mar 30 2020 02:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39755 * 125.56127 * 2 1 4 4 H 0.97004 * 125.01594 * 0.02562 * 3 2 1 5 5 C 1.35505 * 109.96476 * 179.70183 * 3 2 1 6 6 C 1.50701 * 125.88920 * 180.31681 * 5 3 2 7 7 C 1.52994 * 109.47021 * 174.59685 * 6 5 3 8 8 C 1.53006 * 109.47016 * 294.59128 * 6 5 3 9 9 C 1.52990 * 109.47421 * 54.59234 * 6 5 3 10 10 C 1.39164 * 108.22135 * 0.44278 * 5 3 2 11 11 C 1.40956 * 126.84374 * 179.82898 * 10 5 3 12 12 H 1.08000 * 120.00524 * 319.28094 * 11 10 5 13 13 C 1.39764 * 119.99798 * 139.27964 * 11 10 5 14 14 N 1.31063 * 120.00336 * 342.92409 * 13 11 10 15 15 Si 1.86801 * 119.99689 * 162.64890 * 13 11 10 16 16 H 1.48503 * 109.46989 * 180.27291 * 15 13 11 17 17 H 1.48500 * 109.47500 * 300.27558 * 15 13 11 18 18 H 1.48503 * 109.47490 * 60.27459 * 15 13 11 19 19 C 1.34863 * 125.56469 * 179.97438 * 2 1 3 20 20 O 1.21627 * 126.69055 * 0.05855 * 19 2 1 21 21 H 1.09000 * 109.46982 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47745 * 299.99648 * 1 2 3 23 23 H 1.09004 * 109.47393 * 60.00222 * 1 2 3 24 24 H 1.09004 * 109.47766 * 70.40521 * 7 6 5 25 25 H 1.08999 * 109.47162 * 190.41215 * 7 6 5 26 26 H 1.09001 * 109.47237 * 310.40632 * 7 6 5 27 27 H 1.08998 * 109.46844 * 59.99946 * 8 6 5 28 28 H 1.08990 * 109.46973 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47175 * 300.00528 * 8 6 5 30 30 H 1.08999 * 109.47572 * 60.00232 * 9 6 5 31 31 H 1.09000 * 109.47636 * 180.02562 * 9 6 5 32 32 H 1.09002 * 109.47518 * 299.99888 * 9 6 5 33 33 H 0.97001 * 119.99934 * 353.97945 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2777 1.1369 0.0000 4 1 1.9552 2.0517 0.0004 5 6 3.5829 0.7726 0.0066 6 6 4.7620 1.7110 0.0155 7 6 6.0545 0.9046 0.1569 8 6 4.7947 2.5013 -1.2942 9 6 4.6340 2.6798 1.1927 10 6 3.6467 -0.6176 0.0009 11 6 4.8122 -1.4102 0.0014 12 1 5.6595 -1.1252 -0.6047 13 6 4.8716 -2.5651 0.7863 14 7 4.0115 -2.7411 1.7594 15 14 6.1720 -3.8616 0.4434 16 1 6.0184 -4.9831 1.4046 17 1 6.0098 -4.3712 -0.9420 18 1 7.5217 -3.2612 0.5950 19 6 2.2494 -1.0971 0.0005 20 8 1.8787 -2.2555 0.0000 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 6.2407 0.3521 -0.7641 25 1 6.8864 1.5823 0.3487 26 1 5.9572 0.2049 0.9870 27 1 3.8739 3.0758 -1.3950 28 1 5.6478 3.1797 -1.2880 29 1 4.8859 1.8111 -2.1329 30 1 4.6107 2.1169 2.1257 31 1 5.4866 3.3589 1.1989 32 1 3.7132 3.2544 1.0919 33 1 3.3904 -2.0331 1.9917 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261005340.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:51 Heat of formation + Delta-G solvation = 2.319265 kcal Electronic energy + Delta-G solvation = -16310.926846 eV Core-core repulsion = 13758.655257 eV Total energy + Delta-G solvation = -2552.271590 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.76365 -38.37643 -37.07381 -35.14366 -32.92230 -30.84885 -28.21273 -27.99159 -27.36284 -26.10447 -22.64349 -21.37761 -20.23344 -19.20259 -17.70826 -16.66812 -16.35443 -15.97347 -15.54373 -15.12541 -14.96749 -14.69455 -14.13195 -13.97248 -13.62983 -13.49508 -13.22511 -12.73082 -12.55525 -12.53009 -12.32584 -11.98086 -11.90241 -11.61622 -11.52563 -11.19623 -10.55818 -10.25267 -9.58320 -8.75910 -8.26261 -5.78169 1.16939 1.20826 1.55124 1.68124 1.82531 2.53575 2.65907 3.25719 3.54489 4.01084 4.13974 4.25230 4.28156 4.39058 4.58114 4.61227 4.87093 4.91502 4.94880 5.02205 5.17772 5.20923 5.29350 5.30739 5.55570 5.57857 5.63414 5.94243 6.26457 6.31542 6.79611 7.01706 7.21722 7.55870 7.75247 8.69380 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.021819 B = 0.014148 C = 0.009478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.972919 B = 1978.614757 C = 2953.601558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.430 5.430 3 N -0.494 5.494 4 H 0.439 0.561 5 C 0.040 3.960 6 C 0.022 3.978 7 C -0.124 4.124 8 C -0.131 4.131 9 C -0.131 4.131 10 C -0.140 4.140 11 C -0.528 4.528 12 H 0.081 0.919 13 C -0.020 4.020 14 N -0.871 5.871 15 Si 1.107 2.893 16 H -0.290 1.290 17 H -0.280 1.280 18 H -0.249 1.249 19 C 0.477 3.523 20 O -0.607 6.607 21 H 0.077 0.923 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.107 14.265 -3.211 14.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.251 5.251 3 N -0.223 5.223 4 H 0.284 0.716 5 C -0.071 4.071 6 C 0.020 3.980 7 C -0.181 4.181 8 C -0.188 4.188 9 C -0.188 4.188 10 C -0.152 4.152 11 C -0.562 4.562 12 H 0.099 0.901 13 C -0.227 4.227 14 N -0.500 5.500 15 Si 0.929 3.071 16 H -0.216 1.216 17 H -0.206 1.206 18 H -0.173 1.173 19 C 0.274 3.726 20 O -0.490 6.490 21 H 0.095 0.905 22 H 0.104 0.896 23 H 0.110 0.890 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.121 12.147 -2.733 12.451 hybrid contribution -1.433 1.345 -0.372 2.000 sum -1.312 13.491 -3.105 13.906 Atomic orbital electron populations 1.21918 0.74305 1.04228 1.03844 1.47976 1.04369 1.00130 1.72625 1.42497 1.00033 0.99682 1.80134 0.71562 1.21281 0.83518 0.93784 1.08472 1.19001 0.89685 0.92378 0.96984 1.22013 0.94969 0.98986 1.02145 1.21866 1.02725 0.99177 0.95076 1.21830 1.02836 0.97915 0.96214 1.19293 0.91495 0.92099 1.12333 1.19594 0.99910 1.09749 1.26993 0.90109 1.27780 1.01198 1.01324 0.92444 1.70561 1.17586 1.35852 1.26014 0.83129 0.74104 0.73714 0.76181 1.21577 1.20594 1.17327 1.19942 0.89590 0.83338 0.79711 1.90631 1.81109 1.18736 1.58535 0.90471 0.89552 0.89048 0.93440 0.91591 0.93388 0.91916 0.90048 0.94274 0.94592 0.89944 0.91722 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.00 11.49 127.77 1.47 4.47 16 2 N -0.43 -18.37 3.99 -487.41 -1.94 -20.31 16 3 N -0.49 -17.81 7.08 -45.48 -0.32 -18.13 16 4 H 0.44 11.38 8.94 -213.54 -1.91 9.48 16 5 C 0.04 1.69 5.74 42.22 0.24 1.93 16 6 C 0.02 0.70 0.99 -52.93 -0.05 0.65 16 7 C -0.12 -4.49 6.89 71.98 0.50 -3.99 16 8 C -0.13 -3.36 8.44 71.98 0.61 -2.75 16 9 C -0.13 -3.41 8.42 71.98 0.61 -2.81 16 10 C -0.14 -7.67 5.11 -19.88 -0.10 -7.77 16 11 C -0.53 -30.17 6.42 23.31 0.15 -30.02 16 12 H 0.08 4.34 5.19 -2.91 -0.02 4.32 16 13 C -0.02 -1.18 5.19 85.18 0.44 -0.74 16 14 N -0.87 -56.79 12.65 21.81 0.28 -56.51 16 15 Si 1.11 51.86 29.96 68.60 2.06 53.91 16 16 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 19 C 0.48 27.04 7.01 86.74 0.61 27.65 16 20 O -0.61 -39.75 16.36 -4.12 -0.07 -39.82 16 21 H 0.08 2.68 7.73 -2.39 -0.02 2.66 16 22 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 24 H 0.05 1.84 6.12 -2.38 -0.01 1.83 16 25 H 0.07 1.89 8.11 -2.39 -0.02 1.87 16 26 H 0.05 2.13 6.36 -2.39 -0.02 2.11 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.39 8.12 -2.39 -0.02 1.37 16 33 H 0.26 17.46 6.70 -92.71 -0.62 16.84 16 Total: -1.00 -81.02 271.33 3.82 -77.21 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -0.65 Total: 17.04 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 4.46 Total: -13.38 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -1.99 Total: -94.96 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.07 Total: -39.82 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.06 Total: 53.91 kcal Total: -81.02 3.82 -77.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005340.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.526 kcal (2) G-P(sol) polarization free energy of solvation -81.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds