Wall clock time and date at job start Mon Mar 30 2020 03:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48732 * 110.67819 * 2 1 4 4 C 1.53617 * 108.26832 * 188.32516 * 3 2 1 5 5 H 1.08995 * 111.21102 * 181.81038 * 4 3 2 6 6 C 1.53799 * 108.17773 * 59.39299 * 4 3 2 7 7 N 1.46811 * 108.62074 * 296.33355 * 6 4 3 8 8 C 1.36935 * 120.08741 * 124.16195 * 7 6 4 9 9 H 1.08002 * 120.00033 * 331.50353 * 8 7 6 10 10 C 1.38815 * 120.00218 * 151.49639 * 8 7 6 11 11 N 1.31612 * 120.00335 * 334.99757 * 10 8 7 12 12 Si 1.86802 * 119.99756 * 154.99091 * 10 8 7 13 13 H 1.48490 * 109.47505 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47207 * 240.00369 * 12 10 8 15 15 H 1.48502 * 109.47020 * 120.00823 * 12 10 8 16 16 C 1.46819 * 119.83203 * 304.44208 * 7 6 4 17 17 C 1.53373 * 108.82724 * 55.53606 * 16 7 6 18 18 H 1.08997 * 112.04228 * 185.70314 * 17 16 7 19 19 C 1.46768 * 111.00057 * 125.85154 * 2 1 3 20 20 C 1.52291 * 106.99770 * 307.87372 * 17 16 7 21 21 O 1.20764 * 122.49777 * 240.18229 * 20 17 16 22 22 H 1.09006 * 109.46870 * 294.15298 * 1 2 3 23 23 H 1.09002 * 109.46850 * 54.14659 * 1 2 3 24 24 H 1.08993 * 109.47242 * 174.15374 * 1 2 3 25 25 H 1.09009 * 109.21089 * 69.15973 * 3 2 1 26 26 H 1.09001 * 110.81202 * 308.42906 * 3 2 1 27 27 H 1.09009 * 109.61202 * 176.59007 * 6 4 3 28 28 H 1.09006 * 109.61585 * 56.07543 * 6 4 3 29 29 H 0.97006 * 120.00031 * 354.26397 * 11 10 8 30 30 H 1.09002 * 109.62020 * 175.30856 * 16 7 6 31 31 H 1.09000 * 109.61550 * 295.84854 * 16 7 6 32 32 H 1.09000 * 109.49488 * 51.24124 * 19 2 1 33 33 H 1.09003 * 109.49479 * 291.15549 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9942 1.3915 0.0000 4 6 3.5146 1.3323 -0.2112 5 1 3.9551 2.3290 -0.1876 6 6 3.7855 0.6357 -1.5554 7 7 3.2985 -0.7468 -1.4734 8 6 2.3911 -1.2104 -2.3883 9 1 1.6987 -0.5264 -2.8564 10 6 2.3614 -2.5594 -2.7141 11 7 3.4418 -3.2963 -2.5659 12 14 0.7877 -3.3290 -3.3629 13 1 -0.2753 -2.2948 -3.4367 14 1 0.3566 -4.4184 -2.4504 15 1 1.0311 -3.8857 -4.7180 16 6 3.7820 -1.6294 -0.4043 17 6 3.5145 -0.9596 0.9493 18 1 3.9427 -1.5248 1.7771 19 6 1.9950 -0.8025 1.1106 20 6 4.1032 0.4430 0.8760 21 8 4.9723 0.8218 1.6241 22 1 -0.3633 0.4205 0.9378 23 1 -0.3633 0.6019 -0.8330 24 1 -0.3633 -1.0222 -0.1047 25 1 1.7782 1.8564 0.9620 26 1 1.5384 1.9775 -0.7982 27 1 4.8567 0.6349 -1.7577 28 1 3.2605 1.1619 -2.3526 29 1 4.2802 -2.8816 -2.3088 30 1 3.2547 -2.5823 -0.4499 31 1 4.8529 -1.7946 -0.5225 32 1 1.5248 -1.7859 1.1034 33 1 1.7791 -0.3025 2.0548 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261007237.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:14 Heat of formation + Delta-G solvation = 13.293024 kcal Electronic energy + Delta-G solvation = -16937.524564 eV Core-core repulsion = 14385.728833 eV Total energy + Delta-G solvation = -2551.795732 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.08139 -37.19101 -35.07189 -32.59122 -31.93972 -29.52315 -25.95973 -25.71060 -24.14075 -21.86806 -21.72246 -21.01703 -17.68615 -17.16569 -15.54068 -15.01041 -14.78891 -14.49491 -14.30269 -13.86656 -13.62112 -13.41820 -12.94391 -12.51944 -12.31879 -11.82851 -11.68949 -11.29759 -10.97892 -10.90299 -10.63647 -10.44636 -10.37880 -10.25521 -9.98708 -9.26094 -8.69393 -8.32777 -7.61718 -6.60624 -5.93597 -3.05729 2.44083 3.55653 3.57760 3.71140 4.29472 4.53150 4.68296 5.12751 5.17328 5.31077 5.41405 5.52014 5.57628 5.66688 5.79489 5.88067 6.01188 6.02433 6.09048 6.24195 6.26652 6.30841 6.35351 6.57282 6.61362 6.82343 7.11612 7.53998 7.61596 8.01113 8.15795 8.67153 9.19827 9.95393 10.37299 11.35074 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.032420 B = 0.012855 C = 0.011266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.445586 B = 2177.634245 C = 2484.837981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.496 5.496 3 C 0.082 3.918 4 C -0.163 4.163 5 H 0.089 0.911 6 C 0.170 3.830 7 N -0.562 5.562 8 C -0.297 4.297 9 H 0.052 0.948 10 C -0.032 4.032 11 N -0.928 5.928 12 Si 1.062 2.938 13 H -0.293 1.293 14 H -0.294 1.294 15 H -0.299 1.299 16 C 0.169 3.831 17 C -0.163 4.163 18 H 0.090 0.910 19 C 0.087 3.913 20 C 0.371 3.629 21 O -0.482 6.482 22 H 0.006 0.994 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.019 0.981 26 H 0.081 0.919 27 H 0.018 0.982 28 H 0.068 0.932 29 H 0.267 0.733 30 H 0.094 0.906 31 H 0.018 0.982 32 H 0.082 0.918 33 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 6.521 5.068 9.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.219 5.219 3 C -0.046 4.046 4 C -0.185 4.185 5 H 0.107 0.893 6 C 0.042 3.958 7 N -0.282 5.282 8 C -0.427 4.427 9 H 0.069 0.931 10 C -0.232 4.232 11 N -0.570 5.570 12 Si 0.894 3.106 13 H -0.220 1.220 14 H -0.221 1.221 15 H -0.226 1.226 16 C 0.041 3.959 17 C -0.185 4.185 18 H 0.108 0.892 19 C -0.041 4.041 20 C 0.249 3.751 21 O -0.357 6.357 22 H 0.025 0.975 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.037 0.963 26 H 0.099 0.901 27 H 0.036 0.964 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.036 0.964 32 H 0.100 0.900 33 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -4.716 5.060 4.513 8.259 hybrid contribution 0.303 1.864 1.306 2.296 sum -4.413 6.924 5.819 10.064 Atomic orbital electron populations 1.22230 0.87929 1.02260 0.98683 1.62001 1.06030 1.10551 1.43322 1.22258 0.93153 0.90023 0.99136 1.23096 0.96604 0.99214 0.99556 0.89256 1.20821 0.96250 0.87035 0.91729 1.43695 1.49456 1.07001 1.28022 1.19756 1.10199 0.95004 1.17764 0.93053 1.25613 1.03055 0.94661 0.99902 1.70729 0.99573 1.39313 1.47363 0.83569 0.75693 0.75338 0.76034 1.21967 1.22143 1.22641 1.20930 0.96626 0.95510 0.82828 1.23128 0.96361 0.95886 1.03111 0.89163 1.21868 0.93493 0.98563 0.90197 1.25330 0.78958 0.90348 0.80492 1.90301 1.27516 1.77387 1.40521 0.97515 0.91769 0.91392 0.96316 0.90065 0.96369 0.91309 0.92239 0.88762 0.96389 0.89968 0.96707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 9.58 60.06 0.58 1.16 16 2 N -0.50 -8.93 2.02 -240.63 -0.49 -9.42 16 3 C 0.08 1.35 5.08 -2.49 -0.01 1.33 16 4 C -0.16 -2.89 3.66 -90.24 -0.33 -3.22 16 5 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 6 C 0.17 3.41 5.86 -3.46 -0.02 3.39 16 7 N -0.56 -12.98 1.53 -172.00 -0.26 -13.24 16 8 C -0.30 -7.58 8.25 -15.06 -0.12 -7.71 16 9 H 0.05 1.34 7.94 -52.49 -0.42 0.93 16 10 C -0.03 -0.87 4.65 -17.43 -0.08 -0.95 16 11 N -0.93 -26.81 12.38 55.49 0.69 -26.13 16 12 Si 1.06 24.58 29.99 -169.99 -5.10 19.48 16 13 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16 16 C 0.17 3.79 4.03 -3.67 -0.01 3.77 16 17 C -0.16 -3.13 3.72 -90.47 -0.34 -3.47 16 18 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 19 C 0.09 1.54 4.93 -3.58 -0.02 1.52 16 20 C 0.37 7.29 5.87 -27.45 -0.16 7.13 16 21 O -0.48 -10.40 17.97 6.00 0.11 -10.30 16 22 H 0.01 0.09 8.14 -51.93 -0.42 -0.33 16 23 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 24 H 0.07 1.09 8.13 -51.93 -0.42 0.66 16 25 H 0.02 0.29 8.14 -51.92 -0.42 -0.13 16 26 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 27 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 29 H 0.27 7.80 6.80 -40.82 -0.28 7.52 16 30 H 0.09 2.35 6.20 -51.93 -0.32 2.03 16 31 H 0.02 0.43 7.94 -51.93 -0.41 0.01 16 32 H 0.08 1.45 8.08 -51.93 -0.42 1.03 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 258.86 15.07 3.90 3.90 Total: -1.00 -29.31 258.86 -6.53 -35.83 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -4.85 Total: -3.09 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -0.52 Total: 2.97 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.06 Total: -48.79 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.11 Total: -10.30 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.10 Total: 19.48 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.31 -6.53 -35.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261007237.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.124 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds