Wall clock time and date at job start Mon Mar 30 2020 03:21:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.48732 * 110.67819 * 2 1
4 4 C 1.53617 * 108.26832 * 188.32516 * 3 2 1
5 5 H 1.08995 * 111.21102 * 181.81038 * 4 3 2
6 6 C 1.53799 * 108.17773 * 59.39299 * 4 3 2
7 7 N 1.46811 * 108.62074 * 296.33355 * 6 4 3
8 8 C 1.36935 * 120.08741 * 124.16195 * 7 6 4
9 9 H 1.08002 * 120.00033 * 331.50353 * 8 7 6
10 10 C 1.38815 * 120.00218 * 151.49639 * 8 7 6
11 11 N 1.31612 * 120.00335 * 334.99757 * 10 8 7
12 12 Si 1.86802 * 119.99756 * 154.99091 * 10 8 7
13 13 H 1.48490 * 109.47505 * 0.02562 * 12 10 8
14 14 H 1.48506 * 109.47207 * 240.00369 * 12 10 8
15 15 H 1.48502 * 109.47020 * 120.00823 * 12 10 8
16 16 C 1.46819 * 119.83203 * 304.44208 * 7 6 4
17 17 C 1.53373 * 108.82724 * 55.53606 * 16 7 6
18 18 H 1.08997 * 112.04228 * 185.70314 * 17 16 7
19 19 C 1.46768 * 111.00057 * 125.85154 * 2 1 3
20 20 C 1.52291 * 106.99770 * 307.87372 * 17 16 7
21 21 O 1.20764 * 122.49777 * 240.18229 * 20 17 16
22 22 H 1.09006 * 109.46870 * 294.15298 * 1 2 3
23 23 H 1.09002 * 109.46850 * 54.14659 * 1 2 3
24 24 H 1.08993 * 109.47242 * 174.15374 * 1 2 3
25 25 H 1.09009 * 109.21089 * 69.15973 * 3 2 1
26 26 H 1.09001 * 110.81202 * 308.42906 * 3 2 1
27 27 H 1.09009 * 109.61202 * 176.59007 * 6 4 3
28 28 H 1.09006 * 109.61585 * 56.07543 * 6 4 3
29 29 H 0.97006 * 120.00031 * 354.26397 * 11 10 8
30 30 H 1.09002 * 109.62020 * 175.30856 * 16 7 6
31 31 H 1.09000 * 109.61550 * 295.84854 * 16 7 6
32 32 H 1.09000 * 109.49488 * 51.24124 * 19 2 1
33 33 H 1.09003 * 109.49479 * 291.15549 * 19 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9942 1.3915 0.0000
4 6 3.5146 1.3323 -0.2112
5 1 3.9551 2.3290 -0.1876
6 6 3.7855 0.6357 -1.5554
7 7 3.2985 -0.7468 -1.4734
8 6 2.3911 -1.2104 -2.3883
9 1 1.6987 -0.5264 -2.8564
10 6 2.3614 -2.5594 -2.7141
11 7 3.4418 -3.2963 -2.5659
12 14 0.7877 -3.3290 -3.3629
13 1 -0.2753 -2.2948 -3.4367
14 1 0.3566 -4.4184 -2.4504
15 1 1.0311 -3.8857 -4.7180
16 6 3.7820 -1.6294 -0.4043
17 6 3.5145 -0.9596 0.9493
18 1 3.9427 -1.5248 1.7771
19 6 1.9950 -0.8025 1.1106
20 6 4.1032 0.4430 0.8760
21 8 4.9723 0.8218 1.6241
22 1 -0.3633 0.4205 0.9378
23 1 -0.3633 0.6019 -0.8330
24 1 -0.3633 -1.0222 -0.1047
25 1 1.7782 1.8564 0.9620
26 1 1.5384 1.9775 -0.7982
27 1 4.8567 0.6349 -1.7577
28 1 3.2605 1.1619 -2.3526
29 1 4.2802 -2.8816 -2.3088
30 1 3.2547 -2.5823 -0.4499
31 1 4.8529 -1.7946 -0.5225
32 1 1.5248 -1.7859 1.1034
33 1 1.7791 -0.3025 2.0548
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261007237.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:14
Heat of formation + Delta-G solvation = 13.293024 kcal
Electronic energy + Delta-G solvation = -16937.524564 eV
Core-core repulsion = 14385.728833 eV
Total energy + Delta-G solvation = -2551.795732 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.08139 -37.19101 -35.07189 -32.59122 -31.93972 -29.52315 -25.95973 -25.71060
-24.14075 -21.86806 -21.72246 -21.01703 -17.68615 -17.16569 -15.54068 -15.01041
-14.78891 -14.49491 -14.30269 -13.86656 -13.62112 -13.41820 -12.94391 -12.51944
-12.31879 -11.82851 -11.68949 -11.29759 -10.97892 -10.90299 -10.63647 -10.44636
-10.37880 -10.25521 -9.98708 -9.26094 -8.69393 -8.32777 -7.61718 -6.60624
-5.93597 -3.05729 2.44083 3.55653 3.57760 3.71140 4.29472 4.53150
4.68296 5.12751 5.17328 5.31077 5.41405 5.52014 5.57628 5.66688
5.79489 5.88067 6.01188 6.02433 6.09048 6.24195 6.26652 6.30841
6.35351 6.57282 6.61362 6.82343 7.11612 7.53998 7.61596 8.01113
8.15795 8.67153 9.19827 9.95393 10.37299 11.35074
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.032420 B = 0.012855 C = 0.011266
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 863.445586 B = 2177.634245 C = 2484.837981
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 N -0.496 5.496
3 C 0.082 3.918
4 C -0.163 4.163
5 H 0.089 0.911
6 C 0.170 3.830
7 N -0.562 5.562
8 C -0.297 4.297
9 H 0.052 0.948
10 C -0.032 4.032
11 N -0.928 5.928
12 Si 1.062 2.938
13 H -0.293 1.293
14 H -0.294 1.294
15 H -0.299 1.299
16 C 0.169 3.831
17 C -0.163 4.163
18 H 0.090 0.910
19 C 0.087 3.913
20 C 0.371 3.629
21 O -0.482 6.482
22 H 0.006 0.994
23 H 0.063 0.937
24 H 0.067 0.933
25 H 0.019 0.981
26 H 0.081 0.919
27 H 0.018 0.982
28 H 0.068 0.932
29 H 0.267 0.733
30 H 0.094 0.906
31 H 0.018 0.982
32 H 0.082 0.918
33 H 0.015 0.985
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.580 6.521 5.068 9.444
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 N -0.219 5.219
3 C -0.046 4.046
4 C -0.185 4.185
5 H 0.107 0.893
6 C 0.042 3.958
7 N -0.282 5.282
8 C -0.427 4.427
9 H 0.069 0.931
10 C -0.232 4.232
11 N -0.570 5.570
12 Si 0.894 3.106
13 H -0.220 1.220
14 H -0.221 1.221
15 H -0.226 1.226
16 C 0.041 3.959
17 C -0.185 4.185
18 H 0.108 0.892
19 C -0.041 4.041
20 C 0.249 3.751
21 O -0.357 6.357
22 H 0.025 0.975
23 H 0.082 0.918
24 H 0.086 0.914
25 H 0.037 0.963
26 H 0.099 0.901
27 H 0.036 0.964
28 H 0.087 0.913
29 H 0.078 0.922
30 H 0.112 0.888
31 H 0.036 0.964
32 H 0.100 0.900
33 H 0.033 0.967
Dipole moment (debyes) X Y Z Total
from point charges -4.716 5.060 4.513 8.259
hybrid contribution 0.303 1.864 1.306 2.296
sum -4.413 6.924 5.819 10.064
Atomic orbital electron populations
1.22230 0.87929 1.02260 0.98683 1.62001 1.06030 1.10551 1.43322
1.22258 0.93153 0.90023 0.99136 1.23096 0.96604 0.99214 0.99556
0.89256 1.20821 0.96250 0.87035 0.91729 1.43695 1.49456 1.07001
1.28022 1.19756 1.10199 0.95004 1.17764 0.93053 1.25613 1.03055
0.94661 0.99902 1.70729 0.99573 1.39313 1.47363 0.83569 0.75693
0.75338 0.76034 1.21967 1.22143 1.22641 1.20930 0.96626 0.95510
0.82828 1.23128 0.96361 0.95886 1.03111 0.89163 1.21868 0.93493
0.98563 0.90197 1.25330 0.78958 0.90348 0.80492 1.90301 1.27516
1.77387 1.40521 0.97515 0.91769 0.91392 0.96316 0.90065 0.96369
0.91309 0.92239 0.88762 0.96389 0.89968 0.96707
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.58 9.58 60.06 0.58 1.16 16
2 N -0.50 -8.93 2.02 -240.63 -0.49 -9.42 16
3 C 0.08 1.35 5.08 -2.49 -0.01 1.33 16
4 C -0.16 -2.89 3.66 -90.24 -0.33 -3.22 16
5 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16
6 C 0.17 3.41 5.86 -3.46 -0.02 3.39 16
7 N -0.56 -12.98 1.53 -172.00 -0.26 -13.24 16
8 C -0.30 -7.58 8.25 -15.06 -0.12 -7.71 16
9 H 0.05 1.34 7.94 -52.49 -0.42 0.93 16
10 C -0.03 -0.87 4.65 -17.43 -0.08 -0.95 16
11 N -0.93 -26.81 12.38 55.49 0.69 -26.13 16
12 Si 1.06 24.58 29.99 -169.99 -5.10 19.48 16
13 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16
14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
15 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16
16 C 0.17 3.79 4.03 -3.67 -0.01 3.77 16
17 C -0.16 -3.13 3.72 -90.47 -0.34 -3.47 16
18 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16
19 C 0.09 1.54 4.93 -3.58 -0.02 1.52 16
20 C 0.37 7.29 5.87 -27.45 -0.16 7.13 16
21 O -0.48 -10.40 17.97 6.00 0.11 -10.30 16
22 H 0.01 0.09 8.14 -51.93 -0.42 -0.33 16
23 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16
24 H 0.07 1.09 8.13 -51.93 -0.42 0.66 16
25 H 0.02 0.29 8.14 -51.92 -0.42 -0.13 16
26 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16
27 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16
28 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16
29 H 0.27 7.80 6.80 -40.82 -0.28 7.52 16
30 H 0.09 2.35 6.20 -51.93 -0.32 2.03 16
31 H 0.02 0.43 7.94 -51.93 -0.41 0.01 16
32 H 0.08 1.45 8.08 -51.93 -0.42 1.03 16
33 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16
LS Contribution 258.86 15.07 3.90 3.90
Total: -1.00 -29.31 258.86 -6.53 -35.83
By element:
Atomic # 1 Polarization: 1.76 SS G_CDS: -4.85 Total: -3.09 kcal
Atomic # 6 Polarization: 3.49 SS G_CDS: -0.52 Total: 2.97 kcal
Atomic # 7 Polarization: -48.72 SS G_CDS: -0.06 Total: -48.79 kcal
Atomic # 8 Polarization: -10.40 SS G_CDS: 0.11 Total: -10.30 kcal
Atomic # 14 Polarization: 24.58 SS G_CDS: -5.10 Total: 19.48 kcal
Total LS contribution 3.90 Total: 3.90 kcal
Total: -29.31 -6.53 -35.83 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261007237.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.124 kcal
(2) G-P(sol) polarization free energy of solvation -29.305 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.819 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.293 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds