Wall clock time and date at job start Mon Mar 30 2020 03:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48732 * 110.67819 * 2 1 4 4 C 1.53617 * 108.26832 * 188.32516 * 3 2 1 5 5 H 1.08995 * 111.21102 * 181.81038 * 4 3 2 6 6 C 1.53799 * 108.17773 * 59.39299 * 4 3 2 7 7 N 1.46811 * 108.62074 * 296.33355 * 6 4 3 8 8 C 1.36935 * 120.08741 * 124.16195 * 7 6 4 9 9 H 1.08002 * 120.00033 * 331.50353 * 8 7 6 10 10 C 1.38815 * 120.00218 * 151.49639 * 8 7 6 11 11 N 1.31612 * 120.00335 * 334.99757 * 10 8 7 12 12 Si 1.86802 * 119.99756 * 154.99091 * 10 8 7 13 13 H 1.48490 * 109.47505 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47207 * 240.00369 * 12 10 8 15 15 H 1.48502 * 109.47020 * 120.00823 * 12 10 8 16 16 C 1.46819 * 119.83203 * 304.44208 * 7 6 4 17 17 C 1.53373 * 108.82724 * 55.53606 * 16 7 6 18 18 H 1.08997 * 112.04228 * 185.70314 * 17 16 7 19 19 C 1.46768 * 111.00057 * 125.85154 * 2 1 3 20 20 C 1.52291 * 106.99770 * 307.87372 * 17 16 7 21 21 O 1.20764 * 122.49777 * 240.18229 * 20 17 16 22 22 H 1.09006 * 109.46870 * 294.15298 * 1 2 3 23 23 H 1.09002 * 109.46850 * 54.14659 * 1 2 3 24 24 H 1.08993 * 109.47242 * 174.15374 * 1 2 3 25 25 H 1.09009 * 109.21089 * 69.15973 * 3 2 1 26 26 H 1.09001 * 110.81202 * 308.42906 * 3 2 1 27 27 H 1.09009 * 109.61202 * 176.59007 * 6 4 3 28 28 H 1.09006 * 109.61585 * 56.07543 * 6 4 3 29 29 H 0.97006 * 120.00031 * 354.26397 * 11 10 8 30 30 H 1.09002 * 109.62020 * 175.30856 * 16 7 6 31 31 H 1.09000 * 109.61550 * 295.84854 * 16 7 6 32 32 H 1.09000 * 109.49488 * 51.24124 * 19 2 1 33 33 H 1.09003 * 109.49479 * 291.15549 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9942 1.3915 0.0000 4 6 3.5146 1.3323 -0.2112 5 1 3.9551 2.3290 -0.1876 6 6 3.7855 0.6357 -1.5554 7 7 3.2985 -0.7468 -1.4734 8 6 2.3911 -1.2104 -2.3883 9 1 1.6987 -0.5264 -2.8564 10 6 2.3614 -2.5594 -2.7141 11 7 3.4418 -3.2963 -2.5659 12 14 0.7877 -3.3290 -3.3629 13 1 -0.2753 -2.2948 -3.4367 14 1 0.3566 -4.4184 -2.4504 15 1 1.0311 -3.8857 -4.7180 16 6 3.7820 -1.6294 -0.4043 17 6 3.5145 -0.9596 0.9493 18 1 3.9427 -1.5248 1.7771 19 6 1.9950 -0.8025 1.1106 20 6 4.1032 0.4430 0.8760 21 8 4.9723 0.8218 1.6241 22 1 -0.3633 0.4205 0.9378 23 1 -0.3633 0.6019 -0.8330 24 1 -0.3633 -1.0222 -0.1047 25 1 1.7782 1.8564 0.9620 26 1 1.5384 1.9775 -0.7982 27 1 4.8567 0.6349 -1.7577 28 1 3.2605 1.1619 -2.3526 29 1 4.2802 -2.8816 -2.3088 30 1 3.2547 -2.5823 -0.4499 31 1 4.8529 -1.7946 -0.5225 32 1 1.5248 -1.7859 1.1034 33 1 1.7791 -0.3025 2.0548 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261007237.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:14 Heat of formation + Delta-G solvation = -3.582618 kcal Electronic energy + Delta-G solvation = -16938.256347 eV Core-core repulsion = 14385.728833 eV Total energy + Delta-G solvation = -2552.527515 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.63573 -38.78222 -36.72624 -34.20663 -33.60419 -31.25987 -27.52230 -27.19284 -25.89164 -23.37708 -23.26162 -22.69175 -19.49124 -18.80755 -17.12076 -16.53935 -16.29739 -16.06967 -15.88791 -15.52638 -15.22470 -15.12383 -14.57069 -14.04618 -13.82487 -13.29835 -13.10938 -12.90134 -12.61218 -12.46410 -12.36015 -12.08401 -11.90322 -11.89685 -11.72573 -11.16713 -10.37366 -10.18792 -9.14905 -8.38438 -7.97790 -5.10253 0.86195 1.68477 1.74641 1.89781 2.78531 2.97114 3.06816 3.38294 3.65817 3.68691 3.86426 3.97141 4.13684 4.22920 4.44544 4.59938 4.61362 4.67205 4.72608 4.78913 4.81786 4.83685 4.94411 5.02359 5.09441 5.16574 5.24492 6.12407 6.25318 6.30147 6.47992 6.59958 7.22113 7.97931 8.41388 9.27118 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.032420 B = 0.012855 C = 0.011266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.445586 B = 2177.634245 C = 2484.837981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.526 5.526 3 C 0.086 3.914 4 C -0.152 4.152 5 H 0.114 0.886 6 C 0.167 3.833 7 N -0.573 5.573 8 C -0.274 4.274 9 H 0.051 0.949 10 C -0.087 4.087 11 N -0.963 5.963 12 Si 1.106 2.894 13 H -0.269 1.269 14 H -0.298 1.298 15 H -0.307 1.307 16 C 0.181 3.819 17 C -0.160 4.160 18 H 0.100 0.900 19 C 0.093 3.907 20 C 0.371 3.629 21 O -0.501 6.501 22 H 0.029 0.971 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.037 0.963 26 H 0.098 0.902 27 H 0.009 0.991 28 H 0.077 0.923 29 H 0.250 0.750 30 H 0.066 0.934 31 H -0.005 1.005 32 H 0.077 0.923 33 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.135 8.254 5.635 11.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.250 5.250 3 C -0.042 4.042 4 C -0.173 4.173 5 H 0.132 0.868 6 C 0.040 3.960 7 N -0.294 5.294 8 C -0.405 4.405 9 H 0.068 0.932 10 C -0.280 4.280 11 N -0.608 5.608 12 Si 0.935 3.065 13 H -0.194 1.194 14 H -0.225 1.225 15 H -0.235 1.235 16 C 0.053 3.947 17 C -0.182 4.182 18 H 0.118 0.882 19 C -0.036 4.036 20 C 0.250 3.750 21 O -0.378 6.378 22 H 0.047 0.953 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.116 0.884 27 H 0.027 0.973 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.013 0.987 32 H 0.095 0.905 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.289 6.837 5.092 10.594 hybrid contribution 0.845 1.399 1.140 1.993 sum -5.443 8.236 6.232 11.675 Atomic orbital electron populations 1.22200 0.86411 1.02016 1.00107 1.61920 1.07636 1.11628 1.43828 1.22295 0.91631 0.89498 1.00752 1.23051 0.98089 0.99526 0.96650 0.86768 1.20911 0.95694 0.85720 0.93633 1.43800 1.49412 1.08118 1.28030 1.19854 1.09242 0.94636 1.16718 0.93154 1.26663 1.04475 0.95902 1.01002 1.70855 0.99674 1.39567 1.50754 0.82951 0.73608 0.75127 0.74839 1.19385 1.22532 1.23486 1.20599 0.94692 0.94666 0.84728 1.23061 0.98196 0.95714 1.01199 0.88230 1.21779 0.91766 0.98793 0.91232 1.25593 0.78268 0.90578 0.80531 1.90300 1.28130 1.77779 1.41558 0.95292 0.91132 0.92396 0.94491 0.88409 0.97275 0.90430 0.94026 0.91548 0.98705 0.90488 0.94667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.13 9.58 127.69 1.22 2.35 16 2 N -0.53 -17.46 2.02 -915.21 -1.85 -19.31 16 3 C 0.09 2.47 5.08 86.16 0.44 2.91 16 4 C -0.15 -4.94 3.66 -10.55 -0.04 -4.97 16 5 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 6 C 0.17 6.46 5.86 86.59 0.51 6.96 16 7 N -0.57 -26.17 1.53 -698.10 -1.07 -27.23 16 8 C -0.27 -13.76 8.25 84.03 0.69 -13.07 16 9 H 0.05 2.54 7.94 -2.91 -0.02 2.52 16 10 C -0.09 -4.66 4.65 84.86 0.39 -4.27 16 11 N -0.96 -57.08 12.38 21.65 0.27 -56.81 16 12 Si 1.11 49.53 29.99 68.60 2.06 51.58 16 13 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 14 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 15 H -0.31 -14.03 7.11 99.48 0.71 -13.33 16 16 C 0.18 8.22 4.03 86.44 0.35 8.57 16 17 C -0.16 -5.99 3.72 -10.70 -0.04 -6.03 16 18 H 0.10 3.48 8.14 -2.39 -0.02 3.47 16 19 C 0.09 3.08 4.93 86.53 0.43 3.50 16 20 C 0.37 13.87 5.87 30.13 0.18 14.05 16 21 O -0.50 -20.73 17.97 -1.46 -0.03 -20.76 16 22 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 23 H 0.07 1.86 8.08 -2.39 -0.02 1.84 16 24 H 0.06 1.71 8.13 -2.39 -0.02 1.69 16 25 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.10 2.52 8.08 -2.39 -0.02 2.50 16 27 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 28 H 0.08 2.85 7.91 -2.38 -0.02 2.83 16 29 H 0.25 15.19 6.80 -92.70 -0.63 14.56 16 30 H 0.07 3.41 6.20 -2.39 -0.01 3.40 16 31 H 0.00 -0.24 7.94 -2.39 -0.02 -0.26 16 32 H 0.08 2.61 8.08 -2.39 -0.02 2.59 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -62.12 258.86 4.74 -57.39 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 1.22 Total: 5.13 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 4.13 Total: 10.01 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -2.65 Total: -103.36 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.03 Total: -20.76 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 2.06 Total: 51.58 kcal Total: -62.12 4.74 -57.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261007237.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.806 kcal (2) G-P(sol) polarization free energy of solvation -62.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds