Wall clock time and date at job start Mon Mar 30 2020 02:39:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50704 * 109.46934 * 2 1
4 4 N 1.30267 * 125.90809 * 270.37356 * 3 2 1
5 5 N 1.39853 * 109.46716 * 180.13206 * 4 3 2
6 6 C 1.46498 * 125.68537 * 179.80584 * 5 4 3
7 7 C 1.53001 * 109.47082 * 59.69428 * 6 5 4
8 8 C 1.52999 * 109.47138 * 299.68893 * 6 5 4
9 9 C 1.34926 * 108.62370 * 359.54269 * 5 4 3
10 10 O 1.35285 * 126.51781 * 180.24505 * 9 5 4
11 11 C 1.40248 * 106.96249 * 0.26239 * 9 5 4
12 12 C 1.41290 * 126.62071 * 180.02562 * 11 9 5
13 13 H 1.08003 * 119.99901 * 151.13063 * 12 11 9
14 14 C 1.39594 * 119.99979 * 331.12731 * 12 11 9
15 15 N 1.31158 * 120.00046 * 341.17860 * 14 12 11
16 16 Si 1.86797 * 120.00227 * 161.17883 * 14 12 11
17 17 H 1.48503 * 109.47171 * 59.99831 * 16 14 12
18 18 H 1.48500 * 109.47242 * 180.02562 * 16 14 12
19 19 H 1.48501 * 109.46788 * 300.00202 * 16 14 12
20 20 H 1.08998 * 109.47309 * 59.99968 * 1 2 3
21 21 H 1.09000 * 109.47224 * 180.02562 * 1 2 3
22 22 H 1.09002 * 109.47088 * 299.99841 * 1 2 3
23 23 H 1.08991 * 109.47243 * 240.00607 * 2 1 3
24 24 H 1.08998 * 109.47309 * 120.00032 * 2 1 3
25 25 H 1.09004 * 109.46722 * 179.68976 * 6 5 4
26 26 H 1.08994 * 109.47226 * 59.99732 * 7 6 5
27 27 H 1.09004 * 109.46973 * 299.99394 * 7 6 5
28 28 H 1.09006 * 109.47137 * 179.97438 * 7 6 5
29 29 H 1.09006 * 109.47070 * 179.97438 * 8 6 5
30 30 H 1.08999 * 109.47263 * 300.00266 * 8 6 5
31 31 H 1.09000 * 109.46804 * 60.00596 * 8 6 5
32 32 H 0.96698 * 114.00124 * 89.99744 * 10 9 5
33 33 H 0.97000 * 119.99996 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 7 2.2805 2.1435 -1.0551
5 7 2.7328 3.4062 -0.6593
6 6 3.1174 4.4968 -1.5587
7 6 1.9257 4.8748 -2.4406
8 6 4.2818 4.0432 -2.4415
9 6 2.7504 3.4546 0.6890
10 8 3.1229 4.5078 1.4520
11 6 2.3096 2.2052 1.1490
12 6 2.1684 1.8051 2.4967
13 1 1.4286 1.0657 2.7658
14 6 2.9851 2.3655 3.4803
15 7 4.1025 2.9635 3.1426
16 14 2.4867 2.2637 5.2777
17 1 2.3683 0.8387 5.6786
18 1 3.5158 2.9303 6.1153
19 1 1.1792 2.9416 5.4679
20 1 -0.3634 0.5138 -0.8900
21 1 -0.3634 -1.0277 0.0005
22 1 -0.3633 0.5138 0.8900
23 1 1.8933 -0.5137 -0.8900
24 1 1.8934 -0.5138 0.8900
25 1 3.4231 5.3621 -0.9705
26 1 1.0963 5.1980 -1.8116
27 1 1.6200 4.0095 -3.0288
28 1 2.2117 5.6866 -3.1095
29 1 4.5676 4.8545 -3.1111
30 1 5.1307 3.7739 -1.8132
31 1 3.9761 3.1779 -3.0297
32 1 2.3983 5.1083 1.6742
33 1 4.6701 3.3526 3.8261
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261017929.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:39:11
Heat of formation + Delta-G solvation = 18.383167 kcal
Electronic energy + Delta-G solvation = -15970.598477 eV
Core-core repulsion = 13419.023471 eV
Total energy + Delta-G solvation = -2551.575007 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.55053 -35.55604 -35.15869 -32.86542 -32.31420 -28.56268 -28.01780 -26.85040
-24.29861 -23.29800 -20.69487 -19.79450 -18.18122 -16.94652 -16.09114 -15.11952
-14.67815 -14.05487 -13.85953 -13.29395 -13.17138 -12.78765 -12.43797 -12.22392
-11.88699 -11.84631 -11.41699 -11.22965 -11.02442 -10.80429 -10.70402 -10.58899
-10.44361 -10.32091 -10.25817 -9.48963 -8.85080 -8.55403 -7.60467 -6.82589
-6.26710 -3.81817 3.15204 3.27597 3.29325 3.31868 3.70907 4.22030
4.29986 5.15872 5.43980 5.47677 5.54732 5.68515 5.77841 5.86865
5.93626 6.06376 6.15463 6.19311 6.22434 6.45742 6.54642 6.59627
6.60810 6.73070 6.97380 7.33621 7.53184 7.65712 7.92449 8.15390
8.61915 9.05555 9.23475 9.42181 9.47273 10.74645
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.025030 B = 0.011228 C = 0.008509
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1118.376812 B = 2493.093812 C = 3289.994123
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.024 4.024
3 C 0.017 3.983
4 N -0.307 5.307
5 N -0.386 5.386
6 C 0.166 3.834
7 C -0.154 4.154
8 C -0.154 4.154
9 C 0.128 3.872
10 O -0.428 6.428
11 C -0.009 4.009
12 C -0.460 4.460
13 H 0.069 0.931
14 C 0.077 3.923
15 N -0.788 5.788
16 Si 0.891 3.109
17 H -0.272 1.272
18 H -0.286 1.286
19 H -0.272 1.272
20 H 0.046 0.954
21 H 0.046 0.954
22 H 0.057 0.943
23 H 0.056 0.944
24 H 0.076 0.924
25 H 0.086 0.914
26 H 0.053 0.947
27 H 0.065 0.935
28 H 0.059 0.941
29 H 0.058 0.942
30 H 0.057 0.943
31 H 0.064 0.936
32 H 0.342 0.658
33 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.250 2.095 -5.575 6.784
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.063 4.063
3 C -0.148 4.148
4 N -0.135 5.135
5 N -0.185 5.185
6 C 0.062 3.938
7 C -0.213 4.213
8 C -0.212 4.212
9 C -0.036 4.036
10 O -0.224 6.224
11 C -0.020 4.020
12 C -0.493 4.493
13 H 0.088 0.912
14 C -0.138 4.138
15 N -0.416 5.416
16 Si 0.717 3.283
17 H -0.197 1.197
18 H -0.211 1.211
19 H -0.197 1.197
20 H 0.065 0.935
21 H 0.065 0.935
22 H 0.076 0.924
23 H 0.075 0.925
24 H 0.094 0.906
25 H 0.104 0.896
26 H 0.072 0.928
27 H 0.084 0.916
28 H 0.078 0.922
29 H 0.077 0.923
30 H 0.076 0.924
31 H 0.083 0.917
32 H 0.192 0.808
33 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -2.386 2.156 -6.706 7.437
hybrid contribution -0.446 0.520 1.908 2.027
sum -2.832 2.676 -4.798 6.181
Atomic orbital electron populations
1.21670 0.96022 1.00182 1.01806 1.19597 0.94637 0.90566 1.01546
1.22061 1.05141 0.95925 0.91664 1.76297 1.22058 0.91490 1.23652
1.48134 1.55549 1.10832 1.03980 1.20758 0.94351 0.87847 0.90820
1.22100 0.98008 1.01507 0.99646 1.22077 0.98096 1.01523 0.99546
1.18867 1.14712 0.90436 0.79619 1.85001 1.34038 1.36064 1.67310
1.17588 1.01405 0.89807 0.93153 1.18333 1.17874 1.23140 0.89993
0.91241 1.25546 0.93928 0.94732 0.99637 1.69949 1.08229 1.28857
1.34540 0.86689 0.78810 0.78792 0.84031 1.19742 1.21113 1.19723
0.93457 0.93506 0.92410 0.92545 0.90570 0.89585 0.92796 0.91606
0.92183 0.92312 0.92404 0.91734 0.80754 0.92148
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.41 9.89 37.16 0.37 -2.05 16
2 C -0.02 -0.49 6.31 -27.88 -0.18 -0.66 16
3 C 0.02 0.42 6.52 -81.87 -0.53 -0.11 16
4 N -0.31 -7.39 12.28 33.98 0.42 -6.98 16
5 N -0.39 -9.00 3.27 -53.98 -0.18 -9.17 16
6 C 0.17 3.05 3.67 -67.93 -0.25 2.80 16
7 C -0.15 -2.38 9.44 37.16 0.35 -2.03 16
8 C -0.15 -2.57 9.45 37.16 0.35 -2.22 16
9 C 0.13 3.32 7.52 -15.44 -0.12 3.20 16
10 O -0.43 -10.61 10.77 -17.55 -0.19 -10.80 16
11 C -0.01 -0.25 5.65 -106.60 -0.60 -0.85 16
12 C -0.46 -12.61 8.98 -37.92 -0.34 -12.95 16
13 H 0.07 1.83 7.91 -52.48 -0.42 1.42 16
14 C 0.08 2.06 5.09 -17.33 -0.09 1.98 16
15 N -0.79 -22.14 10.83 55.53 0.60 -21.54 16
16 Si 0.89 20.03 29.60 -169.99 -5.03 14.99 16
17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
18 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16
19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
20 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
22 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
24 H 0.08 1.55 7.99 -51.93 -0.41 1.14 16
25 H 0.09 1.54 7.75 -51.93 -0.40 1.14 16
26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
32 H 0.34 7.07 9.06 45.56 0.41 7.48 16
33 H 0.27 7.10 8.30 -40.82 -0.34 6.76 16
LS Contribution 283.02 15.07 4.27 4.27
Total: -1.00 -31.14 283.02 -5.33 -36.48
By element:
Atomic # 1 Polarization: 9.82 SS G_CDS: -4.18 Total: 5.64 kcal
Atomic # 6 Polarization: -11.84 SS G_CDS: -1.04 Total: -12.88 kcal
Atomic # 7 Polarization: -38.53 SS G_CDS: 0.84 Total: -37.69 kcal
Atomic # 8 Polarization: -10.61 SS G_CDS: -0.19 Total: -10.80 kcal
Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 14.99 kcal
Total LS contribution 4.27 Total: 4.27 kcal
Total: -31.14 -5.33 -36.48 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261017929.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.859 kcal
(2) G-P(sol) polarization free energy of solvation -31.144 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.715 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.332 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.476 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.383 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds