Wall clock time and date at job start Mon Mar 30 2020 02:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.46934 * 2 1 4 4 N 1.30267 * 125.90809 * 270.37356 * 3 2 1 5 5 N 1.39853 * 109.46716 * 180.13206 * 4 3 2 6 6 C 1.46498 * 125.68537 * 179.80584 * 5 4 3 7 7 C 1.53001 * 109.47082 * 59.69428 * 6 5 4 8 8 C 1.52999 * 109.47138 * 299.68893 * 6 5 4 9 9 C 1.34926 * 108.62370 * 359.54269 * 5 4 3 10 10 O 1.35285 * 126.51781 * 180.24505 * 9 5 4 11 11 C 1.40248 * 106.96249 * 0.26239 * 9 5 4 12 12 C 1.41290 * 126.62071 * 180.02562 * 11 9 5 13 13 H 1.08003 * 119.99901 * 151.13063 * 12 11 9 14 14 C 1.39594 * 119.99979 * 331.12731 * 12 11 9 15 15 N 1.31158 * 120.00046 * 341.17860 * 14 12 11 16 16 Si 1.86797 * 120.00227 * 161.17883 * 14 12 11 17 17 H 1.48503 * 109.47171 * 59.99831 * 16 14 12 18 18 H 1.48500 * 109.47242 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46788 * 300.00202 * 16 14 12 20 20 H 1.08998 * 109.47309 * 59.99968 * 1 2 3 21 21 H 1.09000 * 109.47224 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47088 * 299.99841 * 1 2 3 23 23 H 1.08991 * 109.47243 * 240.00607 * 2 1 3 24 24 H 1.08998 * 109.47309 * 120.00032 * 2 1 3 25 25 H 1.09004 * 109.46722 * 179.68976 * 6 5 4 26 26 H 1.08994 * 109.47226 * 59.99732 * 7 6 5 27 27 H 1.09004 * 109.46973 * 299.99394 * 7 6 5 28 28 H 1.09006 * 109.47137 * 179.97438 * 7 6 5 29 29 H 1.09006 * 109.47070 * 179.97438 * 8 6 5 30 30 H 1.08999 * 109.47263 * 300.00266 * 8 6 5 31 31 H 1.09000 * 109.46804 * 60.00596 * 8 6 5 32 32 H 0.96698 * 114.00124 * 89.99744 * 10 9 5 33 33 H 0.97000 * 119.99996 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2805 2.1435 -1.0551 5 7 2.7328 3.4062 -0.6593 6 6 3.1174 4.4968 -1.5587 7 6 1.9257 4.8748 -2.4406 8 6 4.2818 4.0432 -2.4415 9 6 2.7504 3.4546 0.6890 10 8 3.1229 4.5078 1.4520 11 6 2.3096 2.2052 1.1490 12 6 2.1684 1.8051 2.4967 13 1 1.4286 1.0657 2.7658 14 6 2.9851 2.3655 3.4803 15 7 4.1025 2.9635 3.1426 16 14 2.4867 2.2637 5.2777 17 1 2.3683 0.8387 5.6786 18 1 3.5158 2.9303 6.1153 19 1 1.1792 2.9416 5.4679 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.4231 5.3621 -0.9705 26 1 1.0963 5.1980 -1.8116 27 1 1.6200 4.0095 -3.0288 28 1 2.2117 5.6866 -3.1095 29 1 4.5676 4.8545 -3.1111 30 1 5.1307 3.7739 -1.8132 31 1 3.9761 3.1779 -3.0297 32 1 2.3983 5.1083 1.6742 33 1 4.6701 3.3526 3.8261 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261017929.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:11 Heat of formation + Delta-G solvation = 18.383167 kcal Electronic energy + Delta-G solvation = -15970.598477 eV Core-core repulsion = 13419.023471 eV Total energy + Delta-G solvation = -2551.575007 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.55053 -35.55604 -35.15869 -32.86542 -32.31420 -28.56268 -28.01780 -26.85040 -24.29861 -23.29800 -20.69487 -19.79450 -18.18122 -16.94652 -16.09114 -15.11952 -14.67815 -14.05487 -13.85953 -13.29395 -13.17138 -12.78765 -12.43797 -12.22392 -11.88699 -11.84631 -11.41699 -11.22965 -11.02442 -10.80429 -10.70402 -10.58899 -10.44361 -10.32091 -10.25817 -9.48963 -8.85080 -8.55403 -7.60467 -6.82589 -6.26710 -3.81817 3.15204 3.27597 3.29325 3.31868 3.70907 4.22030 4.29986 5.15872 5.43980 5.47677 5.54732 5.68515 5.77841 5.86865 5.93626 6.06376 6.15463 6.19311 6.22434 6.45742 6.54642 6.59627 6.60810 6.73070 6.97380 7.33621 7.53184 7.65712 7.92449 8.15390 8.61915 9.05555 9.23475 9.42181 9.47273 10.74645 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.025030 B = 0.011228 C = 0.008509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.376812 B = 2493.093812 C = 3289.994123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.024 4.024 3 C 0.017 3.983 4 N -0.307 5.307 5 N -0.386 5.386 6 C 0.166 3.834 7 C -0.154 4.154 8 C -0.154 4.154 9 C 0.128 3.872 10 O -0.428 6.428 11 C -0.009 4.009 12 C -0.460 4.460 13 H 0.069 0.931 14 C 0.077 3.923 15 N -0.788 5.788 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.272 1.272 20 H 0.046 0.954 21 H 0.046 0.954 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.342 0.658 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.250 2.095 -5.575 6.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.063 4.063 3 C -0.148 4.148 4 N -0.135 5.135 5 N -0.185 5.185 6 C 0.062 3.938 7 C -0.213 4.213 8 C -0.212 4.212 9 C -0.036 4.036 10 O -0.224 6.224 11 C -0.020 4.020 12 C -0.493 4.493 13 H 0.088 0.912 14 C -0.138 4.138 15 N -0.416 5.416 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.197 1.197 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.192 0.808 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.386 2.156 -6.706 7.437 hybrid contribution -0.446 0.520 1.908 2.027 sum -2.832 2.676 -4.798 6.181 Atomic orbital electron populations 1.21670 0.96022 1.00182 1.01806 1.19597 0.94637 0.90566 1.01546 1.22061 1.05141 0.95925 0.91664 1.76297 1.22058 0.91490 1.23652 1.48134 1.55549 1.10832 1.03980 1.20758 0.94351 0.87847 0.90820 1.22100 0.98008 1.01507 0.99646 1.22077 0.98096 1.01523 0.99546 1.18867 1.14712 0.90436 0.79619 1.85001 1.34038 1.36064 1.67310 1.17588 1.01405 0.89807 0.93153 1.18333 1.17874 1.23140 0.89993 0.91241 1.25546 0.93928 0.94732 0.99637 1.69949 1.08229 1.28857 1.34540 0.86689 0.78810 0.78792 0.84031 1.19742 1.21113 1.19723 0.93457 0.93506 0.92410 0.92545 0.90570 0.89585 0.92796 0.91606 0.92183 0.92312 0.92404 0.91734 0.80754 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.89 37.16 0.37 -2.05 16 2 C -0.02 -0.49 6.31 -27.88 -0.18 -0.66 16 3 C 0.02 0.42 6.52 -81.87 -0.53 -0.11 16 4 N -0.31 -7.39 12.28 33.98 0.42 -6.98 16 5 N -0.39 -9.00 3.27 -53.98 -0.18 -9.17 16 6 C 0.17 3.05 3.67 -67.93 -0.25 2.80 16 7 C -0.15 -2.38 9.44 37.16 0.35 -2.03 16 8 C -0.15 -2.57 9.45 37.16 0.35 -2.22 16 9 C 0.13 3.32 7.52 -15.44 -0.12 3.20 16 10 O -0.43 -10.61 10.77 -17.55 -0.19 -10.80 16 11 C -0.01 -0.25 5.65 -106.60 -0.60 -0.85 16 12 C -0.46 -12.61 8.98 -37.92 -0.34 -12.95 16 13 H 0.07 1.83 7.91 -52.48 -0.42 1.42 16 14 C 0.08 2.06 5.09 -17.33 -0.09 1.98 16 15 N -0.79 -22.14 10.83 55.53 0.60 -21.54 16 16 Si 0.89 20.03 29.60 -169.99 -5.03 14.99 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.08 1.55 7.99 -51.93 -0.41 1.14 16 25 H 0.09 1.54 7.75 -51.93 -0.40 1.14 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.34 7.07 9.06 45.56 0.41 7.48 16 33 H 0.27 7.10 8.30 -40.82 -0.34 6.76 16 LS Contribution 283.02 15.07 4.27 4.27 Total: -1.00 -31.14 283.02 -5.33 -36.48 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.18 Total: 5.64 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -1.04 Total: -12.88 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.84 Total: -37.69 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.19 Total: -10.80 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.14 -5.33 -36.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261017929.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.859 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds