Wall clock time and date at job start Mon Mar 30 2020 02:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50704 * 109.46973 * 119.99419 * 2 1 3 5 5 N 1.30825 * 125.86104 * 300.04484 * 4 2 1 6 6 N 1.40071 * 108.34456 * 179.97438 * 5 4 2 7 7 C 1.46494 * 126.03699 * 180.02562 * 6 5 4 8 8 C 1.35137 * 107.92481 * 0.02562 * 6 5 4 9 9 O 1.35753 * 126.19117 * 180.26338 * 8 6 5 10 10 C 1.35955 * 107.61047 * 359.97438 * 8 6 5 11 11 C 1.50698 * 126.07890 * 179.97438 * 10 8 6 12 12 C 1.50696 * 109.47418 * 90.02377 * 11 10 8 13 13 H 1.08004 * 119.99904 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00588 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99647 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00396 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46929 * 60.00020 * 16 14 12 18 18 H 1.48498 * 109.47212 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47037 * 300.00182 * 16 14 12 20 20 H 1.08995 * 109.47462 * 300.00540 * 1 2 3 21 21 H 1.09000 * 109.46841 * 59.99980 * 1 2 3 22 22 H 1.08998 * 109.47228 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47259 * 239.99841 * 2 1 3 24 24 H 1.09002 * 109.47436 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47293 * 299.99743 * 3 2 1 26 26 H 1.08995 * 109.47408 * 59.99427 * 3 2 1 27 27 H 1.09000 * 109.47498 * 269.97914 * 7 6 5 28 28 H 1.08997 * 109.47198 * 29.98667 * 7 6 5 29 29 H 1.09006 * 109.46878 * 149.97928 * 7 6 5 30 30 H 0.96701 * 113.99902 * 269.68154 * 9 8 6 31 31 H 1.09002 * 109.47084 * 210.02623 * 11 10 8 32 32 H 1.09005 * 109.47265 * 330.02325 * 11 10 8 33 33 H 0.96998 * 120.00182 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7873 -0.3651 2.4684 6 7 2.4310 -1.2759 3.3158 7 6 2.4124 -1.2519 4.7804 8 6 3.0723 -2.1807 2.5436 9 8 3.8096 -3.2318 2.9846 10 6 2.8400 -1.8515 1.2451 11 6 3.3613 -2.5854 0.0365 12 6 2.3757 -3.6513 -0.3677 13 1 1.4628 -3.7838 0.1941 14 6 2.6386 -4.4568 -1.4553 15 7 3.7500 -4.2952 -2.1398 16 14 1.4166 -5.7776 -1.9567 17 1 0.1127 -5.1468 -2.2844 18 1 1.9303 -6.5009 -3.1476 19 1 1.2354 -6.7353 -0.8365 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 3.2468 -0.6526 5.1447 28 1 1.4744 -0.8163 5.1248 29 1 2.5021 -2.2692 5.1616 30 1 4.7465 -3.0291 3.1118 31 1 3.4941 -1.8826 -0.7860 32 1 4.3184 -3.0481 0.2773 33 1 3.9352 -4.8621 -2.9047 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261021040.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:53 Heat of formation + Delta-G solvation = 17.804454 kcal Electronic energy + Delta-G solvation = -15695.339590 eV Core-core repulsion = 13143.739488 eV Total energy + Delta-G solvation = -2551.600102 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.75082 -36.78014 -35.06662 -33.25218 -31.89417 -29.87161 -27.12286 -26.66850 -25.55477 -22.75249 -21.91548 -20.02336 -18.59795 -17.12787 -16.30099 -15.73383 -14.95845 -14.48161 -14.12532 -13.92811 -13.28791 -13.01916 -12.92742 -12.27597 -12.17092 -11.87749 -11.60690 -11.33836 -11.21616 -11.00139 -10.70195 -10.66337 -10.58119 -10.18551 -9.72341 -9.42619 -9.29250 -8.44396 -8.29233 -7.36196 -5.91302 -3.92911 2.33893 2.90995 3.39280 3.42019 3.43400 3.52599 4.54189 4.59300 4.98469 5.31148 5.35638 5.42429 5.46875 5.57917 5.70336 5.93976 6.06195 6.09258 6.26630 6.36691 6.42232 6.49377 6.75767 6.80485 6.88726 7.15605 7.41145 7.68584 7.81736 8.04763 8.19134 8.38626 8.50913 9.10644 9.69449 11.18067 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.022649 B = 0.010071 C = 0.008082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.961773 B = 2779.516576 C = 3463.674779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.015 4.015 3 C -0.138 4.138 4 C 0.092 3.908 5 N -0.293 5.293 6 N -0.399 5.399 7 C 0.108 3.892 8 C 0.226 3.774 9 O -0.458 6.458 10 C -0.182 4.182 11 C 0.092 3.908 12 C -0.498 4.498 13 H 0.052 0.948 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.100 0.900 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.383 0.617 31 H 0.028 0.972 32 H 0.022 0.978 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 7.979 8.536 11.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.035 4.035 3 C -0.196 4.196 4 C -0.073 4.073 5 N -0.119 5.119 6 N -0.193 5.193 7 C -0.034 4.034 8 C 0.061 3.939 9 O -0.259 6.259 10 C -0.193 4.193 11 C 0.054 3.946 12 C -0.537 4.537 13 H 0.070 0.930 14 C -0.143 4.143 15 N -0.538 5.538 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.204 1.204 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.118 0.882 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.238 0.762 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.208 8.305 9.293 12.658 hybrid contribution 0.313 -1.336 -0.459 1.447 sum -1.896 6.968 8.834 11.410 Atomic orbital electron populations 1.21746 0.94496 1.02200 1.01052 1.19589 0.95589 0.94700 0.93617 1.21788 1.01001 0.95461 1.01360 1.21876 0.97170 0.95471 0.92830 1.77155 1.21107 1.12953 1.00642 1.48694 1.42413 1.22367 1.05868 1.21597 1.03020 1.02977 0.75815 1.18489 0.98741 0.87860 0.88833 1.84928 1.23349 1.29964 1.87635 1.20655 1.05415 0.98595 0.94673 1.17596 0.95712 0.93523 0.87790 1.21054 1.04939 1.15819 1.11864 0.93009 1.24963 0.95425 0.97453 0.96487 1.69939 1.24377 1.39860 1.19650 0.86681 0.81604 0.82060 0.77830 1.20250 1.21348 1.20398 0.92908 0.92650 0.92266 0.88158 0.92843 0.92551 0.92737 0.91887 0.90011 0.90068 0.76205 0.95409 0.95957 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.18 37.16 0.34 -1.91 16 2 C -0.01 -0.27 3.30 -91.77 -0.30 -0.57 16 3 C -0.14 -2.08 9.17 37.16 0.34 -1.74 16 4 C 0.09 1.91 5.72 -82.43 -0.47 1.44 16 5 N -0.29 -5.82 12.57 33.66 0.42 -5.39 16 6 N -0.40 -7.38 4.02 -68.28 -0.27 -7.66 16 7 C 0.11 1.38 11.42 59.84 0.68 2.07 16 8 C 0.23 4.70 7.92 -16.92 -0.13 4.56 16 9 O -0.46 -8.54 13.53 -18.97 -0.26 -8.80 16 10 C -0.18 -4.20 5.31 -104.85 -0.56 -4.76 16 11 C 0.09 2.42 5.09 -29.04 -0.15 2.27 16 12 C -0.50 -14.35 9.09 -34.44 -0.31 -14.67 16 13 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 16 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 23 H 0.10 2.00 6.90 -51.93 -0.36 1.64 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 30 H 0.38 5.07 9.06 45.56 0.41 5.48 16 31 H 0.03 0.75 7.23 -51.93 -0.38 0.38 16 32 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 286.57 15.07 4.32 4.32 Total: -1.00 -33.29 286.57 -4.82 -38.11 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.09 Total: 0.12 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -0.66 Total: -11.76 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.88 Total: -39.09 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.26 Total: -8.80 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.29 -4.82 -38.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021040.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.916 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds