Wall clock time and date at job start Mon Mar 30 2020 02:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50704 * 109.46973 * 119.99419 * 2 1 3 5 5 N 1.30825 * 125.86104 * 300.04484 * 4 2 1 6 6 N 1.40071 * 108.34456 * 179.97438 * 5 4 2 7 7 C 1.46494 * 126.03699 * 180.02562 * 6 5 4 8 8 C 1.35137 * 107.92481 * 0.02562 * 6 5 4 9 9 O 1.35753 * 126.19117 * 180.26338 * 8 6 5 10 10 C 1.35955 * 107.61047 * 359.97438 * 8 6 5 11 11 C 1.50698 * 126.07890 * 179.97438 * 10 8 6 12 12 C 1.50696 * 109.47418 * 90.02377 * 11 10 8 13 13 H 1.08004 * 119.99904 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00588 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99647 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00396 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46929 * 60.00020 * 16 14 12 18 18 H 1.48498 * 109.47212 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47037 * 300.00182 * 16 14 12 20 20 H 1.08995 * 109.47462 * 300.00540 * 1 2 3 21 21 H 1.09000 * 109.46841 * 59.99980 * 1 2 3 22 22 H 1.08998 * 109.47228 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47259 * 239.99841 * 2 1 3 24 24 H 1.09002 * 109.47436 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47293 * 299.99743 * 3 2 1 26 26 H 1.08995 * 109.47408 * 59.99427 * 3 2 1 27 27 H 1.09000 * 109.47498 * 269.97914 * 7 6 5 28 28 H 1.08997 * 109.47198 * 29.98667 * 7 6 5 29 29 H 1.09006 * 109.46878 * 149.97928 * 7 6 5 30 30 H 0.96701 * 113.99902 * 269.68154 * 9 8 6 31 31 H 1.09002 * 109.47084 * 210.02623 * 11 10 8 32 32 H 1.09005 * 109.47265 * 330.02325 * 11 10 8 33 33 H 0.96998 * 120.00182 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7873 -0.3651 2.4684 6 7 2.4310 -1.2759 3.3158 7 6 2.4124 -1.2519 4.7804 8 6 3.0723 -2.1807 2.5436 9 8 3.8096 -3.2318 2.9846 10 6 2.8400 -1.8515 1.2451 11 6 3.3613 -2.5854 0.0365 12 6 2.3757 -3.6513 -0.3677 13 1 1.4628 -3.7838 0.1941 14 6 2.6386 -4.4568 -1.4553 15 7 3.7500 -4.2952 -2.1398 16 14 1.4166 -5.7776 -1.9567 17 1 0.1127 -5.1468 -2.2844 18 1 1.9303 -6.5009 -3.1476 19 1 1.2354 -6.7353 -0.8365 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 3.2468 -0.6526 5.1447 28 1 1.4744 -0.8163 5.1248 29 1 2.5021 -2.2692 5.1616 30 1 4.7465 -3.0291 3.1118 31 1 3.4941 -1.8826 -0.7860 32 1 4.3184 -3.0481 0.2773 33 1 3.9352 -4.8621 -2.9047 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261021040.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:53 Heat of formation + Delta-G solvation = -6.378300 kcal Electronic energy + Delta-G solvation = -15696.388233 eV Core-core repulsion = 13143.739488 eV Total energy + Delta-G solvation = -2552.648744 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.29929 -38.27775 -36.50482 -35.28364 -33.44038 -31.65621 -28.76439 -27.92779 -27.17224 -24.70444 -23.33174 -21.64239 -20.12322 -18.61703 -18.42851 -17.32428 -16.50806 -16.42231 -15.48660 -15.29190 -14.71566 -14.54315 -14.40184 -14.09127 -13.47870 -13.34891 -13.20396 -13.02381 -12.80528 -12.62167 -12.49056 -12.33896 -11.98841 -11.75211 -11.56943 -11.48832 -11.04573 -10.51082 -9.90543 -9.06453 -8.10825 -6.22489 0.80362 1.39800 1.42485 1.50132 1.52490 1.84461 2.46246 3.16635 3.18403 3.66331 4.01900 4.19389 4.37037 4.42639 4.59390 4.61680 4.64589 4.76612 4.88103 5.01837 5.04342 5.09187 5.22359 5.41032 5.44667 5.46119 5.70858 5.77839 5.83318 5.93653 6.31236 6.76289 6.84273 6.87184 7.44056 8.96456 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.022649 B = 0.010071 C = 0.008082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.961773 B = 2779.516576 C = 3463.674779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.020 4.020 3 C -0.128 4.128 4 C 0.086 3.914 5 N -0.294 5.294 6 N -0.391 5.391 7 C 0.097 3.903 8 C 0.238 3.762 9 O -0.466 6.466 10 C -0.233 4.233 11 C 0.108 3.892 12 C -0.515 4.515 13 H 0.039 0.961 14 C 0.008 3.992 15 N -0.928 5.928 16 Si 0.954 3.046 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.275 1.275 20 H 0.061 0.939 21 H 0.081 0.919 22 H 0.034 0.966 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.408 0.592 31 H 0.007 0.993 32 H -0.002 1.002 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.215 8.440 9.663 13.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.041 4.041 3 C -0.186 4.186 4 C -0.078 4.078 5 N -0.121 5.121 6 N -0.185 5.185 7 C -0.043 4.043 8 C 0.069 3.931 9 O -0.271 6.271 10 C -0.245 4.245 11 C 0.070 3.930 12 C -0.553 4.553 13 H 0.057 0.943 14 C -0.189 4.189 15 N -0.569 5.569 16 Si 0.779 3.221 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.200 1.200 20 H 0.080 0.920 21 H 0.100 0.900 22 H 0.053 0.947 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.267 0.733 31 H 0.025 0.975 32 H 0.016 0.984 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.147 8.786 10.454 14.013 hybrid contribution 0.673 -1.490 -0.694 1.776 sum -2.473 7.296 9.760 12.434 Atomic orbital electron populations 1.21692 0.93076 1.01136 1.02817 1.19670 0.96771 0.96105 0.91541 1.21711 1.00519 0.93408 1.02928 1.22131 0.96770 0.94942 0.93990 1.77103 1.21324 1.13429 1.00229 1.49060 1.40762 1.20937 1.07708 1.22067 1.05163 1.04747 0.72311 1.18425 0.98237 0.87685 0.88717 1.84843 1.25180 1.29656 1.87398 1.20465 1.08647 1.00654 0.94687 1.17204 0.94211 0.92681 0.88868 1.21279 1.04970 1.16880 1.12179 0.94292 1.25772 0.97234 0.99591 0.96340 1.70048 1.25936 1.40832 1.20046 0.85666 0.79489 0.79208 0.77694 1.19332 1.20257 1.20049 0.91981 0.89982 0.94680 0.90984 0.93547 0.90038 0.92003 0.89022 0.88416 0.88670 0.73321 0.97518 0.98424 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.18 71.98 0.66 -3.49 16 2 C -0.02 -0.74 3.30 -11.54 -0.04 -0.78 16 3 C -0.13 -3.70 9.17 71.98 0.66 -3.04 16 4 C 0.09 3.61 5.72 43.09 0.25 3.86 16 5 N -0.29 -11.35 12.57 -47.42 -0.60 -11.95 16 6 N -0.39 -13.78 4.02 -481.27 -1.93 -15.71 16 7 C 0.10 2.18 11.42 127.77 1.46 3.63 16 8 C 0.24 9.74 7.92 83.65 0.66 10.40 16 9 O -0.47 -16.99 13.53 -90.79 -1.23 -18.22 16 10 C -0.23 -10.98 5.31 -20.01 -0.11 -11.09 16 11 C 0.11 5.97 5.09 29.10 0.15 6.12 16 12 C -0.51 -30.55 9.09 25.60 0.23 -30.32 16 13 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 14 C 0.01 0.49 5.46 84.65 0.46 0.95 16 15 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 16 Si 0.95 45.65 29.54 68.60 2.03 47.68 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 21 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 22 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.07 3.01 6.90 -2.39 -0.02 2.99 16 24 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 28 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.09 1.91 8.13 -2.38 -0.02 1.89 16 30 H 0.41 10.30 9.06 -74.06 -0.67 9.63 16 31 H 0.01 0.38 7.23 -2.39 -0.02 0.36 16 32 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 33 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -72.40 286.57 3.37 -69.03 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.43 Total: 9.05 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 4.39 Total: -23.75 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -2.24 Total: -83.78 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -1.23 Total: -18.22 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -72.40 3.37 -69.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021040.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.653 kcal (2) G-P(sol) polarization free energy of solvation -72.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds