Wall clock time and date at job start Mon Mar 30 2020 03:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47385 * 59.99525 * 8 6 4 10 10 H 1.48500 * 109.47279 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47348 * 299.99599 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.47047 * 125.41397 * 119.99830 * 12 2 1 14 14 C 1.54097 * 103.86372 * 179.97438 * 13 12 2 15 15 N 1.47048 * 103.86338 * 359.97438 * 14 13 12 16 16 C 1.46510 * 125.40950 * 180.02562 * 15 14 13 17 17 C 1.52999 * 117.49485 * 188.62542 * 16 15 14 18 18 C 1.52992 * 117.49714 * 120.00110 * 16 15 14 19 19 C 1.33946 * 109.18234 * 359.73892 * 15 14 13 20 20 O 1.21583 * 123.04756 * 180.26657 * 19 15 14 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 24 24 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 25 25 H 1.09001 * 110.54662 * 298.59660 * 13 12 2 26 26 H 1.09006 * 110.54837 * 61.25894 * 13 12 2 27 27 H 1.09005 * 110.55300 * 118.59584 * 14 13 12 28 28 H 1.09002 * 110.54871 * 241.26130 * 14 13 12 29 29 H 1.08997 * 115.54611 * 334.32825 * 16 15 14 30 30 H 1.08997 * 117.50165 * 359.97438 * 17 16 15 31 31 H 1.08997 * 117.49954 * 145.02118 * 17 16 15 32 32 H 1.08997 * 117.50084 * 214.97152 * 18 16 15 33 33 H 1.08994 * 117.50258 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.8064 -1.1211 4.0081 10 1 1.8269 -0.4202 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0184 -0.6905 -1.1962 13 6 2.8674 -0.0933 -2.2379 14 6 3.0789 -1.2407 -3.2445 15 7 2.3272 -2.3628 -2.6629 16 6 2.2131 -3.7016 -3.2468 17 6 1.2246 -4.6730 -2.5988 18 6 2.7298 -4.8798 -2.4188 19 6 1.7684 -1.9682 -1.5112 20 8 1.0920 -2.7021 -0.8168 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.7094 1.1615 3.4845 25 1 2.3573 0.7443 -2.7135 26 1 3.8197 0.2292 -1.8169 27 1 2.6737 -0.9732 -4.2204 28 1 4.1374 -1.4882 -3.3257 29 1 2.3355 -3.7545 -4.3286 30 1 0.6594 -4.3162 -1.7378 31 1 0.6963 -5.3654 -3.2543 32 1 3.1918 -5.7082 -2.9559 33 1 3.1542 -4.6590 -1.4395 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261058997.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:39 Heat of formation + Delta-G solvation = 27.030756 kcal Electronic energy + Delta-G solvation = -16092.961373 eV Core-core repulsion = 13541.761354 eV Total energy + Delta-G solvation = -2551.200019 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.38892 -36.73282 -35.41249 -34.15029 -31.82447 -29.18887 -27.73577 -25.08778 -23.22767 -22.50915 -21.91814 -20.73262 -18.46459 -16.61562 -16.34374 -15.71819 -15.14868 -14.77799 -14.17897 -13.61940 -13.34195 -12.97306 -12.62747 -12.51317 -12.14641 -11.87936 -11.34838 -11.18553 -10.94435 -10.75616 -10.61908 -10.47141 -10.24033 -10.11654 -10.01313 -9.25157 -8.68986 -8.30241 -8.08773 -7.41973 -5.98638 -4.02150 3.08048 3.37331 3.40425 3.46871 3.89229 4.30310 4.39728 4.59603 4.89383 5.10006 5.14305 5.21253 5.33238 5.43205 5.60764 5.68544 5.90457 5.95523 6.12211 6.28363 6.48817 6.73335 6.90628 7.07156 7.18288 7.35822 7.55191 7.83832 7.91369 8.17234 8.27562 8.68434 8.98790 9.50354 9.67771 11.07042 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.009372 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.272532 B = 2987.063924 C = 3391.236386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.301 3.699 3 H 0.046 0.954 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.614 5.614 13 C 0.091 3.909 14 C 0.101 3.899 15 N -0.624 5.624 16 C 0.109 3.891 17 C -0.190 4.190 18 C -0.197 4.197 19 C 0.697 3.303 20 O -0.569 6.569 21 H 0.047 0.953 22 H 0.092 0.908 23 H 0.005 0.995 24 H 0.262 0.738 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.138 0.862 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.168 -3.738 -12.443 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.202 3.798 3 H 0.063 0.937 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.351 5.351 13 C -0.034 4.034 14 C -0.023 4.023 15 N -0.362 5.362 16 C 0.005 3.995 17 C -0.228 4.228 18 C -0.237 4.237 19 C 0.400 3.600 20 O -0.446 6.446 21 H 0.066 0.934 22 H 0.111 0.889 23 H 0.024 0.976 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.139 0.861 30 H 0.155 0.845 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.654 -3.990 -11.830 13.008 hybrid contribution 0.513 -0.368 0.686 0.932 sum 4.168 -4.357 -11.144 12.671 Atomic orbital electron populations 1.22127 0.97908 1.00991 1.00009 1.18644 0.91137 0.91415 0.78613 0.93673 1.21290 1.30886 1.12221 0.89995 0.92390 1.24844 0.95169 0.95104 0.98876 1.69863 1.37082 1.23067 1.23705 0.86522 0.78919 0.79966 0.81800 1.20432 1.21291 1.20168 1.48010 1.52546 1.10296 1.24252 1.22222 0.96433 0.95709 0.89035 1.22215 0.96808 0.86161 0.97101 1.46630 1.55061 1.10293 1.24241 1.21065 1.06108 0.77638 0.94731 1.23770 0.93262 1.00486 1.05248 1.23354 0.97774 0.99983 1.02551 1.15919 0.80446 0.83147 0.80520 1.90730 1.43967 1.55864 1.54074 0.93437 0.88949 0.97570 0.92814 0.91097 0.90759 0.91108 0.91037 0.86052 0.84466 0.89285 0.88975 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 8.99 37.16 0.33 -3.61 16 2 C 0.30 7.80 2.89 -69.08 -0.20 7.60 16 3 H 0.05 1.19 8.10 -51.93 -0.42 0.77 16 4 C -0.51 -14.56 8.04 -34.44 -0.28 -14.83 16 5 H 0.06 1.76 7.70 -52.48 -0.40 1.35 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.90 -25.86 11.32 55.43 0.63 -25.23 16 8 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 12 N -0.61 -13.74 2.83 -172.52 -0.49 -14.23 16 13 C 0.09 1.47 7.65 -3.17 -0.02 1.44 16 14 C 0.10 1.38 7.68 -3.17 -0.02 1.35 16 15 N -0.62 -11.04 3.29 -171.20 -0.56 -11.61 16 16 C 0.11 1.63 6.94 -67.93 -0.47 1.16 16 17 C -0.19 -3.02 9.77 -26.73 -0.26 -3.28 16 18 C -0.20 -2.93 10.34 -26.73 -0.28 -3.21 16 19 C 0.70 15.87 7.55 -88.39 -0.67 15.20 16 20 O -0.57 -14.99 12.45 5.29 0.07 -14.92 16 21 H 0.05 1.31 6.81 -51.93 -0.35 0.96 16 22 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 23 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.14 2.79 5.33 -51.93 -0.28 2.51 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 271.51 15.07 4.09 4.09 Total: -1.00 -32.63 271.51 -7.96 -40.59 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.71 Total: 0.42 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.96 Total: 3.47 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.43 Total: -51.07 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.07 Total: -14.92 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.63 -7.96 -40.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058997.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.625 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds