Wall clock time and date at job start Mon Mar 30 2020 03:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47385 * 59.99525 * 8 6 4 10 10 H 1.48500 * 109.47279 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47348 * 299.99599 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.47047 * 125.41397 * 119.99830 * 12 2 1 14 14 C 1.54097 * 103.86372 * 179.97438 * 13 12 2 15 15 N 1.47048 * 103.86338 * 359.97438 * 14 13 12 16 16 C 1.46510 * 125.40950 * 180.02562 * 15 14 13 17 17 C 1.52999 * 117.49485 * 188.62542 * 16 15 14 18 18 C 1.52992 * 117.49714 * 120.00110 * 16 15 14 19 19 C 1.33946 * 109.18234 * 359.73892 * 15 14 13 20 20 O 1.21583 * 123.04756 * 180.26657 * 19 15 14 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 24 24 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 25 25 H 1.09001 * 110.54662 * 298.59660 * 13 12 2 26 26 H 1.09006 * 110.54837 * 61.25894 * 13 12 2 27 27 H 1.09005 * 110.55300 * 118.59584 * 14 13 12 28 28 H 1.09002 * 110.54871 * 241.26130 * 14 13 12 29 29 H 1.08997 * 115.54611 * 334.32825 * 16 15 14 30 30 H 1.08997 * 117.50165 * 359.97438 * 17 16 15 31 31 H 1.08997 * 117.49954 * 145.02118 * 17 16 15 32 32 H 1.08997 * 117.50084 * 214.97152 * 18 16 15 33 33 H 1.08994 * 117.50258 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.8064 -1.1211 4.0081 10 1 1.8269 -0.4202 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0184 -0.6905 -1.1962 13 6 2.8674 -0.0933 -2.2379 14 6 3.0789 -1.2407 -3.2445 15 7 2.3272 -2.3628 -2.6629 16 6 2.2131 -3.7016 -3.2468 17 6 1.2246 -4.6730 -2.5988 18 6 2.7298 -4.8798 -2.4188 19 6 1.7684 -1.9682 -1.5112 20 8 1.0920 -2.7021 -0.8168 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.7094 1.1615 3.4845 25 1 2.3573 0.7443 -2.7135 26 1 3.8197 0.2292 -1.8169 27 1 2.6737 -0.9732 -4.2204 28 1 4.1374 -1.4882 -3.3257 29 1 2.3355 -3.7545 -4.3286 30 1 0.6594 -4.3162 -1.7378 31 1 0.6963 -5.3654 -3.2543 32 1 3.1918 -5.7082 -2.9559 33 1 3.1542 -4.6590 -1.4395 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261058997.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:38 Heat of formation + Delta-G solvation = 5.685006 kcal Electronic energy + Delta-G solvation = -16093.886994 eV Core-core repulsion = 13541.761354 eV Total energy + Delta-G solvation = -2552.125640 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.90583 -38.10592 -37.07741 -36.02884 -33.68923 -30.93799 -29.22424 -27.29794 -24.78339 -23.82491 -23.14669 -22.40526 -20.11745 -18.52429 -17.86797 -17.18425 -16.73200 -16.50445 -15.82918 -15.30050 -14.87579 -14.58369 -14.42433 -13.85475 -13.71432 -13.39203 -13.12974 -12.92487 -12.73656 -12.51860 -12.40641 -12.29192 -12.11520 -11.78228 -11.31151 -11.25807 -10.66021 -10.32708 -9.65872 -8.98200 -8.16461 -6.27679 1.34071 1.38177 1.45241 1.67886 2.31437 2.40677 3.00487 3.08537 3.12470 3.68834 3.90788 4.03849 4.11003 4.28330 4.44273 4.62561 4.72043 4.76648 4.81481 4.90361 4.99836 5.04405 5.09125 5.23631 5.43283 5.54151 5.75299 5.82061 6.02285 6.20548 6.21579 6.76148 7.03595 7.36949 7.90032 8.86815 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.009372 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.272532 B = 2987.063924 C = 3391.236386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.305 3.695 3 H 0.040 0.960 4 C -0.523 4.523 5 H 0.031 0.969 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.271 1.271 11 H -0.288 1.288 12 N -0.631 5.631 13 C 0.081 3.919 14 C 0.106 3.894 15 N -0.623 5.623 16 C 0.112 3.888 17 C -0.207 4.207 18 C -0.191 4.191 19 C 0.682 3.318 20 O -0.621 6.621 21 H 0.019 0.981 22 H 0.072 0.928 23 H 0.028 0.972 24 H 0.266 0.734 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.175 0.825 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.522 -3.861 -14.719 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.204 3.796 3 H 0.058 0.942 4 C -0.562 4.562 5 H 0.050 0.950 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.194 1.194 10 H -0.196 1.196 11 H -0.214 1.214 12 N -0.367 5.367 13 C -0.042 4.042 14 C -0.016 4.016 15 N -0.360 5.360 16 C 0.009 3.991 17 C -0.244 4.244 18 C -0.230 4.230 19 C 0.384 3.616 20 O -0.502 6.502 21 H 0.038 0.962 22 H 0.091 0.909 23 H 0.047 0.953 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.099 0.901 27 H 0.130 0.870 28 H 0.118 0.882 29 H 0.192 0.808 30 H 0.105 0.895 31 H 0.141 0.859 32 H 0.151 0.849 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.052 -4.094 -14.164 15.586 hybrid contribution 0.087 -0.336 1.364 1.407 sum 5.139 -4.430 -12.801 14.488 Atomic orbital electron populations 1.21901 0.98365 0.99070 1.00068 1.18275 0.90770 0.91005 0.79529 0.94234 1.21406 1.31193 1.11694 0.91924 0.95017 1.25527 0.95356 0.95823 1.01312 1.69935 1.37267 1.23638 1.24472 0.85677 0.78928 0.78222 0.79151 1.19368 1.19606 1.21436 1.47855 1.53468 1.10809 1.24572 1.22624 0.95950 0.97448 0.88194 1.22541 0.98246 0.83358 0.97478 1.46778 1.54291 1.12253 1.22720 1.21665 1.04623 0.75991 0.96869 1.23638 0.93733 1.02414 1.04665 1.23335 0.96889 1.01588 1.01211 1.16316 0.80555 0.82985 0.81763 1.90712 1.46181 1.57159 1.56129 0.96161 0.90927 0.95296 0.92454 0.88831 0.90066 0.87040 0.88215 0.80777 0.89540 0.85899 0.84895 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.23 8.99 71.98 0.65 -6.58 16 2 C 0.31 16.20 2.89 44.25 0.13 16.33 16 3 H 0.04 2.13 8.10 -2.39 -0.02 2.11 16 4 C -0.52 -31.17 8.04 25.60 0.21 -30.97 16 5 H 0.03 2.01 7.70 -2.91 -0.02 1.98 16 6 C 0.02 1.11 5.30 84.65 0.45 1.55 16 7 N -0.91 -53.33 11.32 21.45 0.24 -53.09 16 8 Si 0.95 46.79 29.54 68.60 2.03 48.81 16 9 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 12 N -0.63 -28.29 2.83 -818.46 -2.32 -30.61 16 13 C 0.08 2.42 7.65 86.65 0.66 3.09 16 14 C 0.11 2.45 7.68 86.65 0.67 3.11 16 15 N -0.62 -20.80 3.29 -814.28 -2.68 -23.49 16 16 C 0.11 2.99 6.94 44.99 0.31 3.30 16 17 C -0.21 -6.41 9.77 30.60 0.30 -6.12 16 18 C -0.19 -5.38 10.34 30.59 0.32 -5.06 16 19 C 0.68 31.43 7.55 179.57 1.36 32.78 16 20 O -0.62 -34.44 12.45 -3.98 -0.05 -34.49 16 21 H 0.02 1.14 6.81 -2.39 -0.02 1.12 16 22 H 0.07 4.13 6.07 -2.39 -0.01 4.12 16 23 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 25 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 27 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.18 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.09 3.70 5.33 -2.39 -0.01 3.69 16 31 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -75.73 271.51 3.35 -72.38 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.09 Total: 9.05 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 5.04 Total: 11.44 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -4.76 Total: -107.19 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.05 Total: -34.49 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -75.73 3.35 -72.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058997.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.062 kcal (2) G-P(sol) polarization free energy of solvation -75.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds