Wall clock time and date at job start Mon Mar 30 2020 03:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.71708 * 2 1 4 4 C 1.52994 * 109.71702 * 239.34675 * 2 1 3 5 5 N 1.45650 * 110.76818 * 193.60061 * 4 2 1 6 6 C 1.46503 * 117.70035 * 201.89958 * 5 4 2 7 7 C 1.53000 * 117.50051 * 7.53691 * 6 5 4 8 8 C 1.53000 * 117.49946 * 298.87913 * 6 5 4 9 9 C 1.33372 * 124.59534 * 21.87593 * 5 4 2 10 10 O 1.21280 * 118.49434 * 175.69853 * 9 5 4 11 11 C 1.50809 * 123.03417 * 355.52804 * 9 5 4 12 12 N 1.47052 * 108.69023 * 13.00362 * 11 9 5 13 13 C 1.36937 * 121.35139 * 137.21651 * 12 11 9 14 14 H 1.08002 * 119.99992 * 204.58350 * 13 12 11 15 15 C 1.38818 * 120.00059 * 24.57812 * 13 12 11 16 16 N 1.31617 * 119.99768 * 30.18239 * 15 13 12 17 17 Si 1.86798 * 119.99971 * 210.45774 * 15 13 12 18 18 H 1.48497 * 109.47043 * 179.72588 * 17 15 13 19 19 H 1.48497 * 109.47281 * 299.72693 * 17 15 13 20 20 H 1.48503 * 109.47306 * 59.72345 * 17 15 13 21 21 H 1.09000 * 109.47084 * 299.38695 * 1 2 3 22 22 H 1.09005 * 109.47125 * 59.38933 * 1 2 3 23 23 H 1.09006 * 109.47147 * 179.38650 * 1 2 3 24 24 H 1.08999 * 109.22002 * 313.93393 * 4 2 1 25 25 H 1.09004 * 109.21648 * 73.27074 * 4 2 1 26 26 H 1.09001 * 115.54781 * 153.20732 * 6 5 4 27 27 H 1.09003 * 117.49976 * 0.02562 * 7 6 5 28 28 H 1.09003 * 117.49945 * 145.01890 * 7 6 5 29 29 H 1.09004 * 117.49676 * 214.98256 * 8 6 5 30 30 H 1.08998 * 117.50069 * 359.97438 * 8 6 5 31 31 H 1.08993 * 109.72351 * 253.20894 * 11 9 5 32 32 H 1.08995 * 109.60445 * 132.72764 * 11 9 5 33 33 H 0.96999 * 120.00017 * 6.01316 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0462 -0.7343 -1.2390 5 7 3.4665 -1.0300 -1.1098 6 6 4.2268 -1.2693 -2.3390 7 6 3.5155 -1.0178 -3.6700 8 6 3.8022 -2.4505 -3.2138 9 6 4.1235 -1.0978 0.0489 10 8 5.2898 -1.4301 0.0341 11 6 3.4842 -0.7767 1.3765 12 7 2.0269 -0.7060 1.1930 13 6 1.1667 -1.2687 2.0977 14 1 0.1749 -1.5638 1.7885 15 6 1.5696 -1.4599 3.4124 16 7 2.4431 -0.6408 3.9587 17 14 0.8779 -2.8841 4.4035 18 1 1.4681 -2.8718 5.7661 19 1 -0.5976 -2.7483 4.5019 20 1 1.2132 -4.1647 3.7304 21 1 -0.3633 0.5043 0.8954 22 1 -0.3634 0.5233 -0.8845 23 1 -0.3634 -1.0277 -0.0110 24 1 1.4950 -1.6670 -1.3589 25 1 1.8883 -0.1094 -2.1181 26 1 5.2910 -1.0393 -2.2857 27 1 2.4819 -0.6739 -3.6312 28 1 4.1117 -0.6227 -4.4926 29 1 4.5869 -2.9975 -3.7363 30 1 2.9573 -3.0498 -2.8746 31 1 3.8533 0.1822 1.7401 32 1 3.7240 -1.5590 2.0966 33 1 2.7394 0.1457 3.4743 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261094772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:48 Heat of formation + Delta-G solvation = 2.747654 kcal Electronic energy + Delta-G solvation = -16171.609994 eV Core-core repulsion = 13619.356981 eV Total energy + Delta-G solvation = -2552.253013 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.58670 -38.42125 -38.20539 -35.08681 -33.31661 -31.94110 -28.56032 -27.45491 -25.18211 -23.66995 -23.12654 -22.07827 -19.93131 -18.80014 -18.18311 -17.89970 -16.68255 -16.29179 -15.86907 -15.47156 -15.33323 -15.11111 -14.65306 -14.11485 -13.53196 -13.27932 -13.07949 -12.61069 -12.50449 -12.37274 -12.30825 -12.11140 -11.93598 -11.85343 -11.59680 -11.43943 -11.02190 -10.43988 -9.55078 -9.08411 -8.31319 -5.40441 1.43749 1.58507 1.66184 1.83639 1.88303 2.60030 2.87807 3.07839 3.32841 3.59998 3.71851 3.92629 4.01548 4.04101 4.21190 4.34523 4.46094 4.50743 4.66980 4.72059 4.79882 4.84524 4.91970 4.99713 5.17342 5.22002 5.40450 5.53643 5.84362 6.27352 6.36000 6.85055 7.05192 7.67226 8.11501 8.96184 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034103 B = 0.009311 C = 0.008444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.842706 B = 3006.445448 C = 3315.143741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.142 3.858 3 H 0.036 0.964 4 C 0.105 3.895 5 N -0.565 5.565 6 C 0.030 3.970 7 C -0.151 4.151 8 C -0.187 4.187 9 C 0.507 3.493 10 O -0.600 6.600 11 C 0.155 3.845 12 N -0.608 5.608 13 C -0.351 4.351 14 H 0.077 0.923 15 C -0.075 4.075 16 N -0.938 5.938 17 Si 1.106 2.894 18 H -0.297 1.297 19 H -0.267 1.267 20 H -0.286 1.286 21 H 0.044 0.956 22 H 0.090 0.910 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.128 0.872 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.610 0.230 -15.274 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.037 3.963 3 H 0.053 0.947 4 C -0.019 4.019 5 N -0.294 5.294 6 C -0.074 4.074 7 C -0.188 4.188 8 C -0.225 4.225 9 C 0.296 3.704 10 O -0.482 6.482 11 C 0.026 3.974 12 N -0.335 5.335 13 C -0.480 4.480 14 H 0.095 0.905 15 C -0.272 4.272 16 N -0.579 5.579 17 Si 0.931 3.069 18 H -0.223 1.223 19 H -0.193 1.193 20 H -0.213 1.213 21 H 0.063 0.937 22 H 0.108 0.892 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.146 0.854 29 H 0.131 0.869 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.011 -0.722 -13.801 14.144 hybrid contribution 0.322 0.911 -0.808 1.260 sum -2.689 0.189 -14.609 14.855 Atomic orbital electron populations 1.21626 0.92034 1.02172 1.01992 1.21116 0.96208 0.93417 0.85593 0.94652 1.22208 0.78577 1.00886 1.00200 1.46725 1.10343 1.67634 1.04736 1.21906 0.96616 1.06264 0.82580 1.23513 1.02773 0.97791 0.94717 1.23383 1.04125 0.92058 1.02984 1.21241 0.86136 0.75893 0.87161 1.90579 1.18946 1.50562 1.88071 1.20817 0.85283 0.99808 0.91523 1.44604 0.99615 1.63920 1.25322 1.20146 0.99350 1.37642 0.90814 0.90522 1.27095 1.00324 1.03961 0.95786 1.70932 1.36510 1.12208 1.38241 0.82974 0.76051 0.73555 0.74317 1.22325 1.19266 1.21301 0.93651 0.89165 0.92621 0.91780 0.86991 0.86870 0.86612 0.85406 0.86874 0.89231 0.94063 0.91369 0.93738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.77 7.98 71.98 0.57 -3.20 16 2 C 0.14 5.24 3.55 44.84 0.16 5.40 16 3 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 4 C 0.10 3.19 5.22 86.54 0.45 3.64 16 5 N -0.57 -20.57 3.14 -801.86 -2.52 -23.09 16 6 C 0.03 0.90 5.98 44.99 0.27 1.16 16 7 C -0.15 -2.82 9.70 30.62 0.30 -2.52 16 8 C -0.19 -4.32 10.28 30.62 0.31 -4.01 16 9 C 0.51 23.37 7.59 87.91 0.67 24.04 16 10 O -0.60 -30.47 16.38 -3.03 -0.05 -30.52 16 11 C 0.15 7.85 4.94 85.56 0.42 8.27 16 12 N -0.61 -29.29 2.88 -678.95 -1.95 -31.24 16 13 C -0.35 -18.42 8.59 84.04 0.72 -17.70 16 14 H 0.08 3.85 6.33 -2.91 -0.02 3.84 16 15 C -0.07 -4.14 4.60 84.86 0.39 -3.75 16 16 N -0.94 -56.78 12.63 21.65 0.27 -56.50 16 17 Si 1.11 50.24 30.01 68.60 2.06 52.30 16 18 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 21 H 0.04 1.62 7.87 -2.39 -0.02 1.60 16 22 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 23 H 0.05 1.79 7.19 -2.38 -0.02 1.77 16 24 H 0.06 1.95 8.06 -2.39 -0.02 1.93 16 25 H 0.11 2.47 5.98 -2.38 -0.01 2.46 16 26 H 0.11 3.67 7.51 -2.39 -0.02 3.65 16 27 H 0.12 1.86 6.01 -2.39 -0.01 1.84 16 28 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 31 H 0.04 2.19 7.54 -2.39 -0.02 2.17 16 32 H 0.07 3.93 6.92 -2.39 -0.02 3.92 16 33 H 0.25 15.61 6.85 -92.71 -0.63 14.97 16 Total: -1.00 -68.89 265.77 3.31 -65.58 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.23 Total: 12.15 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 4.27 Total: 11.33 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -4.20 Total: -110.84 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.05 Total: -30.52 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 2.06 Total: 52.30 kcal Total: -68.89 3.31 -65.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261094772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.327 kcal (2) G-P(sol) polarization free energy of solvation -68.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds