Wall clock time and date at job start Mon Mar 30 2020 03:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.71460 * 2 1 4 4 C 1.52990 * 109.72134 * 120.61375 * 2 1 3 5 5 N 1.45644 * 110.77120 * 166.39922 * 4 2 1 6 6 C 1.46504 * 117.70244 * 158.10047 * 5 4 2 7 7 C 1.52999 * 117.51794 * 356.98241 * 6 5 4 8 8 C 1.52996 * 60.00081 * 107.48372 * 7 6 5 9 9 C 1.33378 * 124.59395 * 338.37422 * 5 4 2 10 10 O 1.21283 * 118.48993 * 184.01903 * 9 5 4 11 11 C 1.50402 * 123.04694 * 3.77612 * 9 5 4 12 12 N 1.47047 * 108.92521 * 347.76179 * 11 9 5 13 13 C 1.36946 * 121.35424 * 222.55202 * 12 11 9 14 14 H 1.07998 * 119.99810 * 151.73942 * 13 12 11 15 15 C 1.38810 * 119.99532 * 331.73287 * 13 12 11 16 16 N 1.31615 * 120.00481 * 342.66529 * 15 13 12 17 17 Si 1.86802 * 119.99558 * 162.66576 * 15 13 12 18 18 H 1.48500 * 109.47107 * 60.00315 * 17 15 13 19 19 H 1.48504 * 109.47251 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47415 * 300.00310 * 17 15 13 21 21 H 1.08998 * 109.46988 * 299.38613 * 1 2 3 22 22 H 1.09004 * 109.46728 * 59.39033 * 1 2 3 23 23 H 1.09003 * 109.46906 * 179.38748 * 1 2 3 24 24 H 1.08994 * 109.21513 * 46.06563 * 4 2 1 25 25 H 1.08996 * 109.21462 * 286.73325 * 4 2 1 26 26 H 1.09002 * 115.54998 * 211.28578 * 6 5 4 27 27 H 1.09001 * 117.50298 * 214.97659 * 7 6 5 28 28 H 1.09002 * 117.49785 * 359.97438 * 7 6 5 29 29 H 1.09000 * 117.49967 * 252.51218 * 8 7 6 30 30 H 1.09004 * 117.50287 * 107.49111 * 8 7 6 31 31 H 1.09001 * 109.72556 * 227.82646 * 11 9 5 32 32 H 1.09001 * 109.47909 * 107.54892 * 11 9 5 33 33 H 0.97001 * 120.00084 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0463 -0.7334 1.2394 5 7 3.4665 -1.0291 1.1104 6 6 4.2270 -1.2676 2.3397 7 6 3.4857 -1.1179 3.6698 8 6 3.8712 -2.5084 3.1611 9 6 4.1245 -1.0931 -0.0480 10 8 5.2921 -1.4208 -0.0328 11 6 3.4844 -0.7826 -1.3731 12 7 2.0270 -0.7068 -1.1926 13 6 1.1668 -1.2711 -2.0965 14 1 0.1954 -1.6163 -1.7746 15 6 1.5434 -1.3992 -3.4264 16 7 2.5506 -0.6941 -3.8960 17 14 0.6206 -2.5724 -4.5495 18 1 -0.8076 -2.1715 -4.6182 19 1 1.2144 -2.5254 -5.9099 20 1 0.7218 -3.9536 -4.0133 21 1 -0.3633 0.5043 0.8954 22 1 -0.3633 0.5233 -0.8845 23 1 -0.3633 -1.0276 -0.0110 24 1 1.4951 -1.6660 1.3600 25 1 1.8884 -0.1080 2.1180 26 1 5.2742 -0.9665 2.3106 27 1 4.0451 -0.7183 4.5156 28 1 2.4320 -0.8415 3.6304 29 1 3.0711 -3.1471 2.7871 30 1 4.6844 -3.0238 3.6723 31 1 3.7231 -1.5682 -2.0900 32 1 3.8567 0.1733 -1.7416 33 1 2.8140 -0.7839 -4.8253 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261094773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:50 Heat of formation + Delta-G solvation = 23.265813 kcal Electronic energy + Delta-G solvation = -16128.716436 eV Core-core repulsion = 13577.353156 eV Total energy + Delta-G solvation = -2551.363279 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.85011 -36.79527 -36.37353 -33.17177 -31.58837 -30.14352 -26.76670 -25.86450 -23.51711 -22.37532 -21.68494 -20.43520 -18.10488 -16.79607 -16.33492 -15.95306 -14.93802 -14.74955 -14.28776 -13.96436 -13.38135 -13.27290 -12.93562 -12.23007 -12.11618 -11.59381 -11.39611 -11.21087 -10.93284 -10.84535 -10.75272 -10.51599 -10.39835 -10.33542 -10.06085 -9.94466 -9.04081 -8.62751 -8.01989 -6.85916 -5.90925 -3.35541 3.32629 3.35179 3.40913 3.41323 3.49364 4.05495 4.38623 4.92357 5.04392 5.08577 5.16389 5.27593 5.43787 5.58130 5.70813 5.82916 5.83319 5.94858 6.08881 6.15376 6.22822 6.27830 6.36328 6.74130 6.79613 6.94996 7.10329 7.18455 7.71184 8.11000 8.23373 8.83099 9.06905 9.66289 10.23073 11.19057 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035421 B = 0.009144 C = 0.008219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.310775 B = 3061.304072 C = 3406.094186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.152 3.848 3 H 0.039 0.961 4 C 0.101 3.899 5 N -0.575 5.575 6 C 0.077 3.923 7 C -0.191 4.191 8 C -0.193 4.193 9 C 0.504 3.496 10 O -0.573 6.573 11 C 0.169 3.831 12 N -0.588 5.588 13 C -0.261 4.261 14 H 0.075 0.925 15 C 0.008 3.992 16 N -0.901 5.901 17 Si 0.905 3.095 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.283 1.283 21 H 0.043 0.957 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.125 0.875 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 0.556 11.541 11.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.045 3.955 3 H 0.056 0.944 4 C -0.024 4.024 5 N -0.307 5.307 6 C -0.029 4.029 7 C -0.228 4.228 8 C -0.232 4.232 9 C 0.295 3.705 10 O -0.452 6.452 11 C 0.041 3.959 12 N -0.313 5.313 13 C -0.390 4.390 14 H 0.093 0.907 15 C -0.192 4.192 16 N -0.544 5.544 17 Si 0.734 3.266 18 H -0.207 1.207 19 H -0.215 1.215 20 H -0.209 1.209 21 H 0.062 0.938 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.143 0.857 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.371 0.405 11.280 11.371 hybrid contribution -0.444 -0.611 -0.559 0.940 sum -1.816 -0.207 10.721 10.876 Atomic orbital electron populations 1.21712 0.94337 1.02081 1.00833 1.20782 0.94185 0.93897 0.86659 0.94366 1.22157 0.80078 0.99975 1.00147 1.46871 1.09363 1.69655 1.04763 1.21668 0.96881 1.01420 0.82883 1.23321 1.01759 1.00671 0.97087 1.23287 1.03948 0.91483 1.04497 1.22111 0.86675 0.74947 0.86815 1.90595 1.17967 1.48987 1.87661 1.20903 0.83408 1.02656 0.88901 1.44231 1.00757 1.62457 1.23827 1.19043 0.99341 1.33185 0.87386 0.90735 1.25137 0.98529 0.98794 0.96690 1.69980 1.29981 1.39494 1.14923 0.86338 0.79247 0.81217 0.79760 1.20713 1.21512 1.20886 0.93786 0.91354 0.92240 0.92529 0.91668 0.85694 0.88319 0.88136 0.88742 0.88607 0.87529 0.91680 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.04 37.16 0.30 -1.92 16 2 C 0.15 2.94 3.56 -67.51 -0.24 2.70 16 3 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 4 C 0.10 1.71 5.15 -4.51 -0.02 1.69 16 5 N -0.58 -10.99 3.14 -167.31 -0.52 -11.51 16 6 C 0.08 1.24 5.89 -67.93 -0.40 0.84 16 7 C -0.19 -2.30 9.64 -26.73 -0.26 -2.56 16 8 C -0.19 -2.64 10.36 -26.73 -0.28 -2.91 16 9 C 0.50 11.53 7.58 -11.75 -0.09 11.44 16 10 O -0.57 -14.29 16.44 5.55 0.09 -14.19 16 11 C 0.17 4.18 5.11 -5.04 -0.03 4.16 16 12 N -0.59 -14.09 3.00 -166.17 -0.50 -14.59 16 13 C -0.26 -6.72 8.68 -15.06 -0.13 -6.85 16 14 H 0.08 1.84 6.28 -52.49 -0.33 1.51 16 15 C 0.01 0.22 4.93 -17.43 -0.09 0.14 16 16 N -0.90 -25.47 11.52 55.49 0.64 -24.84 16 17 Si 0.91 21.11 29.59 -169.99 -5.03 16.08 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.07 1.25 7.92 -51.93 -0.41 0.84 16 23 H 0.06 1.02 7.10 -51.93 -0.37 0.65 16 24 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 25 H 0.07 0.91 6.18 -51.93 -0.32 0.59 16 26 H 0.13 2.10 7.62 -51.93 -0.40 1.70 16 27 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.10 1.15 6.10 -51.93 -0.32 0.83 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.11 2.92 6.82 -51.93 -0.35 2.57 16 32 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 267.20 15.07 4.03 4.03 Total: -1.00 -29.83 267.20 -7.11 -36.95 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.59 Total: 1.36 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -1.23 Total: 6.72 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.38 Total: -50.94 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.09 Total: -14.19 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.83 -7.11 -36.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261094773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.213 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds