Wall clock time and date at job start Mon Mar 30 2020 03:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.71460 * 2 1 4 4 C 1.52990 * 109.72134 * 120.61375 * 2 1 3 5 5 N 1.45644 * 110.77120 * 166.39922 * 4 2 1 6 6 C 1.46504 * 117.70244 * 158.10047 * 5 4 2 7 7 C 1.52999 * 117.51794 * 356.98241 * 6 5 4 8 8 C 1.52996 * 60.00081 * 107.48372 * 7 6 5 9 9 C 1.33378 * 124.59395 * 338.37422 * 5 4 2 10 10 O 1.21283 * 118.48993 * 184.01903 * 9 5 4 11 11 C 1.50402 * 123.04694 * 3.77612 * 9 5 4 12 12 N 1.47047 * 108.92521 * 347.76179 * 11 9 5 13 13 C 1.36946 * 121.35424 * 222.55202 * 12 11 9 14 14 H 1.07998 * 119.99810 * 151.73942 * 13 12 11 15 15 C 1.38810 * 119.99532 * 331.73287 * 13 12 11 16 16 N 1.31615 * 120.00481 * 342.66529 * 15 13 12 17 17 Si 1.86802 * 119.99558 * 162.66576 * 15 13 12 18 18 H 1.48500 * 109.47107 * 60.00315 * 17 15 13 19 19 H 1.48504 * 109.47251 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47415 * 300.00310 * 17 15 13 21 21 H 1.08998 * 109.46988 * 299.38613 * 1 2 3 22 22 H 1.09004 * 109.46728 * 59.39033 * 1 2 3 23 23 H 1.09003 * 109.46906 * 179.38748 * 1 2 3 24 24 H 1.08994 * 109.21513 * 46.06563 * 4 2 1 25 25 H 1.08996 * 109.21462 * 286.73325 * 4 2 1 26 26 H 1.09002 * 115.54998 * 211.28578 * 6 5 4 27 27 H 1.09001 * 117.50298 * 214.97659 * 7 6 5 28 28 H 1.09002 * 117.49785 * 359.97438 * 7 6 5 29 29 H 1.09000 * 117.49967 * 252.51218 * 8 7 6 30 30 H 1.09004 * 117.50287 * 107.49111 * 8 7 6 31 31 H 1.09001 * 109.72556 * 227.82646 * 11 9 5 32 32 H 1.09001 * 109.47909 * 107.54892 * 11 9 5 33 33 H 0.97001 * 120.00084 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0463 -0.7334 1.2394 5 7 3.4665 -1.0291 1.1104 6 6 4.2270 -1.2676 2.3397 7 6 3.4857 -1.1179 3.6698 8 6 3.8712 -2.5084 3.1611 9 6 4.1245 -1.0931 -0.0480 10 8 5.2921 -1.4208 -0.0328 11 6 3.4844 -0.7826 -1.3731 12 7 2.0270 -0.7068 -1.1926 13 6 1.1668 -1.2711 -2.0965 14 1 0.1954 -1.6163 -1.7746 15 6 1.5434 -1.3992 -3.4264 16 7 2.5506 -0.6941 -3.8960 17 14 0.6206 -2.5724 -4.5495 18 1 -0.8076 -2.1715 -4.6182 19 1 1.2144 -2.5254 -5.9099 20 1 0.7218 -3.9536 -4.0133 21 1 -0.3633 0.5043 0.8954 22 1 -0.3633 0.5233 -0.8845 23 1 -0.3633 -1.0276 -0.0110 24 1 1.4951 -1.6660 1.3600 25 1 1.8884 -0.1080 2.1180 26 1 5.2742 -0.9665 2.3106 27 1 4.0451 -0.7183 4.5156 28 1 2.4320 -0.8415 3.6304 29 1 3.0711 -3.1471 2.7871 30 1 4.6844 -3.0238 3.6723 31 1 3.7231 -1.5682 -2.0900 32 1 3.8567 0.1733 -1.7416 33 1 2.8140 -0.7839 -4.8253 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261094773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:50 Heat of formation + Delta-G solvation = 3.931761 kcal Electronic energy + Delta-G solvation = -16129.554823 eV Core-core repulsion = 13577.353156 eV Total energy + Delta-G solvation = -2552.201667 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.45752 -38.29979 -38.01192 -34.86391 -33.23588 -31.97291 -28.60930 -27.35444 -25.33968 -23.57601 -22.99347 -21.99036 -19.81079 -18.42398 -17.90848 -17.67936 -16.57629 -16.50279 -15.74596 -15.61102 -15.08946 -14.98874 -14.48157 -13.80335 -13.46642 -13.37607 -12.97300 -12.65957 -12.57248 -12.38660 -12.29416 -12.06064 -11.95551 -11.89885 -11.65468 -11.38499 -10.87371 -10.63538 -9.47359 -8.81446 -7.92907 -5.39708 1.47131 1.51002 1.56631 1.57953 1.99951 2.47719 2.92126 3.23706 3.40019 3.76156 3.80230 3.99824 4.09108 4.15361 4.33999 4.45257 4.61306 4.74523 4.77982 4.88612 4.91669 5.00227 5.03683 5.15812 5.21687 5.34705 5.50534 5.63949 5.68536 6.26672 6.46426 6.95997 7.18792 7.71553 8.26418 9.16064 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035421 B = 0.009144 C = 0.008219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.310775 B = 3061.304072 C = 3406.094186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.141 3.859 3 H 0.034 0.966 4 C 0.104 3.896 5 N -0.568 5.568 6 C 0.032 3.968 7 C -0.149 4.149 8 C -0.189 4.189 9 C 0.502 3.498 10 O -0.604 6.604 11 C 0.180 3.820 12 N -0.603 5.603 13 C -0.257 4.257 14 H 0.088 0.912 15 C -0.050 4.050 16 N -0.939 5.939 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.299 1.299 20 H -0.281 1.281 21 H 0.089 0.911 22 H 0.047 0.953 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.127 0.873 28 H 0.116 0.884 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 0.347 14.537 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.036 3.964 3 H 0.052 0.948 4 C -0.019 4.019 5 N -0.297 5.297 6 C -0.072 4.072 7 C -0.186 4.186 8 C -0.228 4.228 9 C 0.291 3.709 10 O -0.486 6.486 11 C 0.051 3.949 12 N -0.328 5.328 13 C -0.386 4.386 14 H 0.106 0.894 15 C -0.246 4.246 16 N -0.584 5.584 17 Si 0.794 3.206 18 H -0.192 1.192 19 H -0.225 1.225 20 H -0.208 1.208 21 H 0.107 0.893 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.145 0.855 28 H 0.134 0.866 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.303 0.202 14.349 14.725 hybrid contribution 0.127 -0.513 -1.368 1.467 sum -3.175 -0.310 12.980 13.367 Atomic orbital electron populations 1.21647 0.92012 1.02254 1.02129 1.21117 0.96177 0.93519 0.85616 0.94778 1.22218 0.78579 1.00847 1.00245 1.46780 1.10337 1.67865 1.04711 1.21867 0.96848 1.05279 0.83216 1.23482 1.02286 0.98322 0.94516 1.23355 1.04196 0.91777 1.03422 1.21525 0.86289 0.75564 0.87474 1.90563 1.19081 1.50799 1.88204 1.20457 0.84683 1.00093 0.89690 1.44467 1.00070 1.63333 1.24964 1.19446 0.99610 1.32009 0.87581 0.89409 1.25917 0.99735 1.00547 0.98400 1.70142 1.32053 1.41509 1.14689 0.85359 0.78632 0.79185 0.77406 1.19216 1.22548 1.20763 0.89265 0.93399 0.92460 0.91711 0.87214 0.87147 0.85451 0.86563 0.89378 0.87070 0.91229 0.94307 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.75 8.04 71.98 0.58 -3.18 16 2 C 0.14 5.22 3.56 44.84 0.16 5.38 16 3 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 4 C 0.10 3.18 5.15 86.54 0.45 3.63 16 5 N -0.57 -20.89 3.14 -802.43 -2.52 -23.41 16 6 C 0.03 0.96 5.89 44.99 0.27 1.23 16 7 C -0.15 -2.83 9.64 30.59 0.30 -2.54 16 8 C -0.19 -4.51 10.36 30.59 0.32 -4.19 16 9 C 0.50 23.52 7.58 87.78 0.67 24.18 16 10 O -0.60 -31.23 16.44 -3.04 -0.05 -31.28 16 11 C 0.18 9.32 5.11 85.44 0.44 9.75 16 12 N -0.60 -29.19 3.00 -679.65 -2.04 -31.23 16 13 C -0.26 -13.31 8.68 84.03 0.73 -12.58 16 14 H 0.09 4.24 6.28 -2.91 -0.02 4.22 16 15 C -0.05 -2.75 4.93 84.86 0.42 -2.33 16 16 N -0.94 -55.47 11.52 21.65 0.25 -55.22 16 17 Si 0.97 44.08 29.59 68.60 2.03 46.11 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.05 1.66 7.92 -2.39 -0.02 1.64 16 23 H 0.06 1.78 7.10 -2.39 -0.02 1.76 16 24 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 25 H 0.11 2.43 6.18 -2.39 -0.01 2.42 16 26 H 0.11 3.62 7.62 -2.39 -0.02 3.61 16 27 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.12 1.89 6.10 -2.39 -0.01 1.88 16 29 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 30 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.07 4.08 6.82 -2.39 -0.02 4.07 16 32 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -67.81 267.20 3.08 -64.73 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.10 Total: 10.94 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 4.31 Total: 19.35 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -4.30 Total: -109.85 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.05 Total: -31.28 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -67.81 3.08 -64.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261094773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.662 kcal (2) G-P(sol) polarization free energy of solvation -67.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds