Wall clock time and date at job start Mon Mar 30 2020 03:10:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09000 * 109.71460 * 2 1
4 4 C 1.52990 * 109.72134 * 120.61375 * 2 1 3
5 5 N 1.45644 * 110.77120 * 166.39922 * 4 2 1
6 6 C 1.46504 * 117.70244 * 158.10047 * 5 4 2
7 7 C 1.52999 * 117.51794 * 356.98241 * 6 5 4
8 8 C 1.52996 * 60.00081 * 107.48372 * 7 6 5
9 9 C 1.33378 * 124.59395 * 338.37422 * 5 4 2
10 10 O 1.21283 * 118.48993 * 184.01903 * 9 5 4
11 11 C 1.50402 * 123.04694 * 3.77612 * 9 5 4
12 12 N 1.47047 * 108.92521 * 347.76179 * 11 9 5
13 13 C 1.36946 * 121.35424 * 222.55202 * 12 11 9
14 14 H 1.07998 * 119.99810 * 151.73942 * 13 12 11
15 15 C 1.38810 * 119.99532 * 331.73287 * 13 12 11
16 16 N 1.31615 * 120.00481 * 342.66529 * 15 13 12
17 17 Si 1.86802 * 119.99558 * 162.66576 * 15 13 12
18 18 H 1.48500 * 109.47107 * 60.00315 * 17 15 13
19 19 H 1.48504 * 109.47251 * 180.02562 * 17 15 13
20 20 H 1.48501 * 109.47415 * 300.00310 * 17 15 13
21 21 H 1.08998 * 109.46988 * 299.38613 * 1 2 3
22 22 H 1.09004 * 109.46728 * 59.39033 * 1 2 3
23 23 H 1.09003 * 109.46906 * 179.38748 * 1 2 3
24 24 H 1.08994 * 109.21513 * 46.06563 * 4 2 1
25 25 H 1.08996 * 109.21462 * 286.73325 * 4 2 1
26 26 H 1.09002 * 115.54998 * 211.28578 * 6 5 4
27 27 H 1.09001 * 117.50298 * 214.97659 * 7 6 5
28 28 H 1.09002 * 117.49785 * 359.97438 * 7 6 5
29 29 H 1.09000 * 117.49967 * 252.51218 * 8 7 6
30 30 H 1.09004 * 117.50287 * 107.49111 * 8 7 6
31 31 H 1.09001 * 109.72556 * 227.82646 * 11 9 5
32 32 H 1.09001 * 109.47909 * 107.54892 * 11 9 5
33 33 H 0.97001 * 120.00084 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8977 1.0261 0.0000
4 6 2.0463 -0.7334 1.2394
5 7 3.4665 -1.0291 1.1104
6 6 4.2270 -1.2676 2.3397
7 6 3.4857 -1.1179 3.6698
8 6 3.8712 -2.5084 3.1611
9 6 4.1245 -1.0931 -0.0480
10 8 5.2921 -1.4208 -0.0328
11 6 3.4844 -0.7826 -1.3731
12 7 2.0270 -0.7068 -1.1926
13 6 1.1668 -1.2711 -2.0965
14 1 0.1954 -1.6163 -1.7746
15 6 1.5434 -1.3992 -3.4264
16 7 2.5506 -0.6941 -3.8960
17 14 0.6206 -2.5724 -4.5495
18 1 -0.8076 -2.1715 -4.6182
19 1 1.2144 -2.5254 -5.9099
20 1 0.7218 -3.9536 -4.0133
21 1 -0.3633 0.5043 0.8954
22 1 -0.3633 0.5233 -0.8845
23 1 -0.3633 -1.0276 -0.0110
24 1 1.4951 -1.6660 1.3600
25 1 1.8884 -0.1080 2.1180
26 1 5.2742 -0.9665 2.3106
27 1 4.0451 -0.7183 4.5156
28 1 2.4320 -0.8415 3.6304
29 1 3.0711 -3.1471 2.7871
30 1 4.6844 -3.0238 3.6723
31 1 3.7231 -1.5682 -2.0900
32 1 3.8567 0.1733 -1.7416
33 1 2.8140 -0.7839 -4.8253
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261094773.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:10:50
Heat of formation + Delta-G solvation = 3.931761 kcal
Electronic energy + Delta-G solvation = -16129.554823 eV
Core-core repulsion = 13577.353156 eV
Total energy + Delta-G solvation = -2552.201667 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.45752 -38.29979 -38.01192 -34.86391 -33.23588 -31.97291 -28.60930 -27.35444
-25.33968 -23.57601 -22.99347 -21.99036 -19.81079 -18.42398 -17.90848 -17.67936
-16.57629 -16.50279 -15.74596 -15.61102 -15.08946 -14.98874 -14.48157 -13.80335
-13.46642 -13.37607 -12.97300 -12.65957 -12.57248 -12.38660 -12.29416 -12.06064
-11.95551 -11.89885 -11.65468 -11.38499 -10.87371 -10.63538 -9.47359 -8.81446
-7.92907 -5.39708 1.47131 1.51002 1.56631 1.57953 1.99951 2.47719
2.92126 3.23706 3.40019 3.76156 3.80230 3.99824 4.09108 4.15361
4.33999 4.45257 4.61306 4.74523 4.77982 4.88612 4.91669 5.00227
5.03683 5.15812 5.21687 5.34705 5.50534 5.63949 5.68536 6.26672
6.46426 6.95997 7.18792 7.71553 8.26418 9.16064
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.035421 B = 0.009144 C = 0.008219
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 790.310775 B = 3061.304072 C = 3406.094186
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C 0.141 3.859
3 H 0.034 0.966
4 C 0.104 3.896
5 N -0.568 5.568
6 C 0.032 3.968
7 C -0.149 4.149
8 C -0.189 4.189
9 C 0.502 3.498
10 O -0.604 6.604
11 C 0.180 3.820
12 N -0.603 5.603
13 C -0.257 4.257
14 H 0.088 0.912
15 C -0.050 4.050
16 N -0.939 5.939
17 Si 0.966 3.034
18 H -0.267 1.267
19 H -0.299 1.299
20 H -0.281 1.281
21 H 0.089 0.911
22 H 0.047 0.953
23 H 0.056 0.944
24 H 0.065 0.935
25 H 0.110 0.890
26 H 0.111 0.889
27 H 0.127 0.873
28 H 0.116 0.884
29 H 0.088 0.912
30 H 0.111 0.889
31 H 0.069 0.931
32 H 0.039 0.961
33 H 0.251 0.749
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.888 0.347 14.537 15.052
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.036 3.964
3 H 0.052 0.948
4 C -0.019 4.019
5 N -0.297 5.297
6 C -0.072 4.072
7 C -0.186 4.186
8 C -0.228 4.228
9 C 0.291 3.709
10 O -0.486 6.486
11 C 0.051 3.949
12 N -0.328 5.328
13 C -0.386 4.386
14 H 0.106 0.894
15 C -0.246 4.246
16 N -0.584 5.584
17 Si 0.794 3.206
18 H -0.192 1.192
19 H -0.225 1.225
20 H -0.208 1.208
21 H 0.107 0.893
22 H 0.066 0.934
23 H 0.075 0.925
24 H 0.083 0.917
25 H 0.128 0.872
26 H 0.129 0.871
27 H 0.145 0.855
28 H 0.134 0.866
29 H 0.106 0.894
30 H 0.129 0.871
31 H 0.088 0.912
32 H 0.057 0.943
33 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -3.303 0.202 14.349 14.725
hybrid contribution 0.127 -0.513 -1.368 1.467
sum -3.175 -0.310 12.980 13.367
Atomic orbital electron populations
1.21647 0.92012 1.02254 1.02129 1.21117 0.96177 0.93519 0.85616
0.94778 1.22218 0.78579 1.00847 1.00245 1.46780 1.10337 1.67865
1.04711 1.21867 0.96848 1.05279 0.83216 1.23482 1.02286 0.98322
0.94516 1.23355 1.04196 0.91777 1.03422 1.21525 0.86289 0.75564
0.87474 1.90563 1.19081 1.50799 1.88204 1.20457 0.84683 1.00093
0.89690 1.44467 1.00070 1.63333 1.24964 1.19446 0.99610 1.32009
0.87581 0.89409 1.25917 0.99735 1.00547 0.98400 1.70142 1.32053
1.41509 1.14689 0.85359 0.78632 0.79185 0.77406 1.19216 1.22548
1.20763 0.89265 0.93399 0.92460 0.91711 0.87214 0.87147 0.85451
0.86563 0.89378 0.87070 0.91229 0.94307 0.93999
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.75 8.04 71.98 0.58 -3.18 16
2 C 0.14 5.22 3.56 44.84 0.16 5.38 16
3 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16
4 C 0.10 3.18 5.15 86.54 0.45 3.63 16
5 N -0.57 -20.89 3.14 -802.43 -2.52 -23.41 16
6 C 0.03 0.96 5.89 44.99 0.27 1.23 16
7 C -0.15 -2.83 9.64 30.59 0.30 -2.54 16
8 C -0.19 -4.51 10.36 30.59 0.32 -4.19 16
9 C 0.50 23.52 7.58 87.78 0.67 24.18 16
10 O -0.60 -31.23 16.44 -3.04 -0.05 -31.28 16
11 C 0.18 9.32 5.11 85.44 0.44 9.75 16
12 N -0.60 -29.19 3.00 -679.65 -2.04 -31.23 16
13 C -0.26 -13.31 8.68 84.03 0.73 -12.58 16
14 H 0.09 4.24 6.28 -2.91 -0.02 4.22 16
15 C -0.05 -2.75 4.93 84.86 0.42 -2.33 16
16 N -0.94 -55.47 11.52 21.65 0.25 -55.22 16
17 Si 0.97 44.08 29.59 68.60 2.03 46.11 16
18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16
19 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16
20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16
21 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16
22 H 0.05 1.66 7.92 -2.39 -0.02 1.64 16
23 H 0.06 1.78 7.10 -2.39 -0.02 1.76 16
24 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16
25 H 0.11 2.43 6.18 -2.39 -0.01 2.42 16
26 H 0.11 3.62 7.62 -2.39 -0.02 3.61 16
27 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16
28 H 0.12 1.89 6.10 -2.39 -0.01 1.88 16
29 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16
30 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16
31 H 0.07 4.08 6.82 -2.39 -0.02 4.07 16
32 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16
33 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16
Total: -1.00 -67.81 267.20 3.08 -64.73
By element:
Atomic # 1 Polarization: 9.84 SS G_CDS: 1.10 Total: 10.94 kcal
Atomic # 6 Polarization: 15.04 SS G_CDS: 4.31 Total: 19.35 kcal
Atomic # 7 Polarization: -105.55 SS G_CDS: -4.30 Total: -109.85 kcal
Atomic # 8 Polarization: -31.23 SS G_CDS: -0.05 Total: -31.28 kcal
Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal
Total: -67.81 3.08 -64.73 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261094773.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.662 kcal
(2) G-P(sol) polarization free energy of solvation -67.813 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.849 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.731 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.932 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds