Wall clock time and date at job start Mon Mar 30 2020 03:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99705 * 2 1 4 4 C 1.50699 * 109.46696 * 180.02562 * 3 2 1 5 5 N 1.31023 * 125.17714 * 269.99941 * 4 3 2 6 6 C 1.33019 * 109.98137 * 180.02562 * 5 4 3 7 7 C 1.39625 * 107.45997 * 0.02562 * 6 5 4 8 8 C 1.40062 * 127.05671 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00265 * 180.02562 * 8 7 6 10 10 C 1.40078 * 119.99866 * 0.03379 * 8 7 6 11 11 N 1.30845 * 120.00149 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99649 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47208 * 59.99583 * 12 10 8 14 14 H 1.48500 * 109.46962 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47014 * 299.99433 * 12 10 8 16 16 N 1.35075 * 125.18135 * 90.00226 * 4 3 2 17 17 C 1.46498 * 126.48015 * 0.02562 * 16 4 3 18 18 C 1.53008 * 109.47227 * 119.99876 * 17 16 4 19 19 C 1.53000 * 109.47089 * 239.99858 * 17 16 4 20 20 H 1.09000 * 109.47362 * 299.99770 * 1 2 3 21 21 H 1.09007 * 109.47308 * 60.00279 * 1 2 3 22 22 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46869 * 60.00759 * 3 2 1 24 24 H 1.09000 * 109.47482 * 299.99695 * 3 2 1 25 25 H 1.07998 * 126.26723 * 180.26185 * 6 5 4 26 26 H 0.97002 * 120.00081 * 180.02562 * 11 10 8 27 27 H 1.09005 * 109.47164 * 359.97438 * 17 16 4 28 28 H 1.08995 * 109.46408 * 59.99703 * 18 17 16 29 29 H 1.08997 * 109.46836 * 179.97438 * 18 17 16 30 30 H 1.08997 * 109.46806 * 300.00171 * 18 17 16 31 31 H 1.08997 * 109.47257 * 60.00498 * 19 17 16 32 32 H 1.09006 * 109.46991 * 180.02562 * 19 17 16 33 33 H 1.08995 * 109.47071 * 299.99979 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1864 -0.0006 5 7 4.2654 1.1266 1.0700 6 6 5.5449 1.0259 0.7208 7 6 5.5994 1.0227 -0.6744 8 6 6.7458 0.9333 -1.4741 9 1 6.6556 0.9417 -2.5503 10 6 8.0095 0.8329 -0.8780 11 7 8.1189 0.8231 0.4258 12 14 9.5384 0.7130 -1.9446 13 1 9.6406 1.9218 -2.8009 14 1 10.7404 0.6178 -1.0778 15 1 9.4496 -0.4956 -2.8029 16 7 4.2878 1.1252 -1.1050 17 6 3.8278 1.1625 -2.4954 18 6 4.4492 2.3666 -3.2061 19 6 4.2510 -0.1241 -3.2072 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6886 1.8463 0.8901 24 1 1.6886 1.8464 -0.8900 25 1 6.3870 0.9552 1.3933 26 1 8.9940 0.7539 0.8386 27 1 2.7414 1.2485 -2.5165 28 1 5.5355 2.2800 -3.1849 29 1 4.1072 2.3940 -4.2407 30 1 4.1477 3.2831 -2.6990 31 1 3.8083 -0.9819 -2.7009 32 1 3.9091 -0.0962 -4.2418 33 1 5.3373 -0.2105 -3.1861 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261165906.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:30 Heat of formation + Delta-G solvation = -0.878686 kcal Electronic energy + Delta-G solvation = -15900.999185 eV Core-core repulsion = 13348.588921 eV Total energy + Delta-G solvation = -2552.410263 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.11659 -37.15006 -34.88122 -33.64226 -29.68199 -29.35480 -27.33395 -26.67532 -25.55496 -23.26663 -21.59383 -19.58987 -18.36793 -17.01410 -15.95033 -15.69908 -15.04794 -14.91570 -13.93004 -13.82600 -13.67873 -12.89702 -12.49073 -12.10756 -12.01783 -11.68883 -11.62661 -11.57039 -11.25014 -11.09473 -10.92485 -10.76080 -10.66048 -10.15880 -9.89926 -9.36549 -9.24605 -8.13866 -8.02752 -6.85947 -6.61108 -4.21549 2.96050 3.08670 3.10270 3.50261 3.91135 4.22072 4.39306 4.97929 5.32343 5.42723 5.47122 5.52519 5.61744 5.69593 5.77009 5.81513 5.87419 5.96324 6.03093 6.23099 6.32490 6.37119 6.70492 6.79239 7.06637 7.20608 7.62415 7.68946 7.90353 8.02606 8.52219 8.90963 9.06700 9.16258 10.02196 10.34166 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035611 B = 0.008963 C = 0.007751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.078497 B = 3123.285796 C = 3611.793239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.173 3.827 4 C 0.060 3.940 5 N -0.464 5.464 6 C -0.130 4.130 7 C 0.193 3.807 8 C -0.442 4.442 9 H 0.077 0.923 10 C 0.072 3.928 11 N -0.799 5.799 12 Si 0.921 3.079 13 H -0.267 1.267 14 H -0.278 1.278 15 H -0.267 1.267 16 N -0.479 5.479 17 C 0.149 3.851 18 C -0.165 4.165 19 C -0.164 4.164 20 H 0.037 0.963 21 H 0.033 0.967 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.186 0.814 26 H 0.279 0.721 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.699 0.858 -6.446 9.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.095 3.905 4 C -0.190 4.190 5 N -0.184 5.184 6 C -0.281 4.281 7 C 0.081 3.919 8 C -0.477 4.477 9 H 0.095 0.905 10 C -0.145 4.145 11 N -0.427 5.427 12 Si 0.746 3.254 13 H -0.192 1.192 14 H -0.203 1.203 15 H -0.192 1.192 16 N -0.173 5.173 17 C 0.045 3.955 18 C -0.223 4.223 19 C -0.222 4.222 20 H 0.056 0.944 21 H 0.052 0.948 22 H 0.097 0.903 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.202 0.798 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.858 0.711 -5.534 8.841 hybrid contribution 0.747 0.107 -1.342 1.540 sum -6.111 0.817 -6.875 9.235 Atomic orbital electron populations 1.22651 0.82558 1.02020 0.99307 1.88099 1.18179 1.29166 1.95174 1.20175 0.87195 0.83854 0.99235 1.21326 0.91825 1.23007 0.82813 1.69390 1.04762 1.15559 1.28658 1.23445 0.92103 1.19517 0.93039 1.18978 0.81563 0.97269 0.94104 1.18463 0.88932 1.46691 0.93598 0.90506 1.25693 1.00356 0.93237 0.95200 1.69607 1.25830 1.37083 1.10150 0.86155 0.79730 0.79540 0.79949 1.19223 1.20260 1.19205 1.44951 1.07023 1.61112 1.04256 1.20817 0.97902 0.95713 0.81106 1.22220 1.03768 0.97430 0.98921 1.22184 1.04104 0.97083 0.98804 0.94441 0.94812 0.90292 0.92168 0.94000 0.79783 0.90982 0.90773 0.90172 0.92483 0.92838 0.92581 0.92595 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.39 -7.69 10.69 -35.23 -0.38 -8.07 16 3 C 0.17 3.47 6.06 36.01 0.22 3.68 16 4 C 0.06 1.51 7.50 -154.95 -1.16 0.35 16 5 N -0.46 -13.10 11.18 -9.76 -0.11 -13.21 16 6 C -0.13 -3.80 10.88 -16.52 -0.18 -3.98 16 7 C 0.19 5.27 6.30 -83.68 -0.53 4.75 16 8 C -0.44 -11.43 7.56 -38.21 -0.29 -11.71 16 9 H 0.08 1.84 4.69 -52.49 -0.25 1.60 16 10 C 0.07 1.80 5.50 -17.28 -0.10 1.71 16 11 N -0.80 -20.92 10.35 55.56 0.57 -20.34 16 12 Si 0.92 18.67 29.56 -169.99 -5.03 13.64 16 13 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 14 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 15 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 16 N -0.48 -11.67 2.64 -103.93 -0.27 -11.95 16 17 C 0.15 2.89 3.36 -67.93 -0.23 2.66 16 18 C -0.17 -2.88 9.21 37.16 0.34 -2.53 16 19 C -0.16 -2.96 9.22 37.16 0.34 -2.62 16 20 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 22 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.04 0.73 7.04 -51.93 -0.37 0.37 16 25 H 0.19 5.53 5.78 -52.49 -0.30 5.23 16 26 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 27 H 0.07 1.31 6.63 -51.93 -0.34 0.97 16 28 H 0.08 1.55 5.66 -51.93 -0.29 1.25 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.56 5.68 -51.93 -0.29 1.27 16 LS Contribution 271.24 15.07 4.09 4.09 Total: -1.00 -30.83 271.24 -5.95 -36.78 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -4.36 Total: 5.19 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -0.47 Total: -6.15 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.19 Total: -45.49 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.38 Total: -8.07 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.83 -5.95 -36.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165906.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.905 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds