Wall clock time and date at job start Mon Mar 30 2020 03:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99705 * 2 1 4 4 C 1.50699 * 109.46696 * 180.02562 * 3 2 1 5 5 N 1.31023 * 125.17714 * 269.99941 * 4 3 2 6 6 C 1.33019 * 109.98137 * 180.02562 * 5 4 3 7 7 C 1.39625 * 107.45997 * 0.02562 * 6 5 4 8 8 C 1.40062 * 127.05671 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00265 * 180.02562 * 8 7 6 10 10 C 1.40078 * 119.99866 * 0.03379 * 8 7 6 11 11 N 1.30845 * 120.00149 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99649 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47208 * 59.99583 * 12 10 8 14 14 H 1.48500 * 109.46962 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47014 * 299.99433 * 12 10 8 16 16 N 1.35075 * 125.18135 * 90.00226 * 4 3 2 17 17 C 1.46498 * 126.48015 * 0.02562 * 16 4 3 18 18 C 1.53008 * 109.47227 * 119.99876 * 17 16 4 19 19 C 1.53000 * 109.47089 * 239.99858 * 17 16 4 20 20 H 1.09000 * 109.47362 * 299.99770 * 1 2 3 21 21 H 1.09007 * 109.47308 * 60.00279 * 1 2 3 22 22 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46869 * 60.00759 * 3 2 1 24 24 H 1.09000 * 109.47482 * 299.99695 * 3 2 1 25 25 H 1.07998 * 126.26723 * 180.26185 * 6 5 4 26 26 H 0.97002 * 120.00081 * 180.02562 * 11 10 8 27 27 H 1.09005 * 109.47164 * 359.97438 * 17 16 4 28 28 H 1.08995 * 109.46408 * 59.99703 * 18 17 16 29 29 H 1.08997 * 109.46836 * 179.97438 * 18 17 16 30 30 H 1.08997 * 109.46806 * 300.00171 * 18 17 16 31 31 H 1.08997 * 109.47257 * 60.00498 * 19 17 16 32 32 H 1.09006 * 109.46991 * 180.02562 * 19 17 16 33 33 H 1.08995 * 109.47071 * 299.99979 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1864 -0.0006 5 7 4.2654 1.1266 1.0700 6 6 5.5449 1.0259 0.7208 7 6 5.5994 1.0227 -0.6744 8 6 6.7458 0.9333 -1.4741 9 1 6.6556 0.9417 -2.5503 10 6 8.0095 0.8329 -0.8780 11 7 8.1189 0.8231 0.4258 12 14 9.5384 0.7130 -1.9446 13 1 9.6406 1.9218 -2.8009 14 1 10.7404 0.6178 -1.0778 15 1 9.4496 -0.4956 -2.8029 16 7 4.2878 1.1252 -1.1050 17 6 3.8278 1.1625 -2.4954 18 6 4.4492 2.3666 -3.2061 19 6 4.2510 -0.1241 -3.2072 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6886 1.8463 0.8901 24 1 1.6886 1.8464 -0.8900 25 1 6.3870 0.9552 1.3933 26 1 8.9940 0.7539 0.8386 27 1 2.7414 1.2485 -2.5165 28 1 5.5355 2.2800 -3.1849 29 1 4.1072 2.3940 -4.2407 30 1 4.1477 3.2831 -2.6990 31 1 3.8083 -0.9819 -2.7009 32 1 3.9091 -0.0962 -4.2418 33 1 5.3373 -0.2105 -3.1861 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261165906.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:30 Heat of formation + Delta-G solvation = -21.250525 kcal Electronic energy + Delta-G solvation = -15901.882574 eV Core-core repulsion = 13348.588921 eV Total energy + Delta-G solvation = -2553.293653 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.01913 -38.59147 -36.52498 -35.55697 -31.48235 -31.14721 -29.00455 -28.07090 -26.93262 -25.10958 -23.29141 -21.51185 -20.13686 -18.89743 -17.41309 -17.37424 -16.67783 -16.37839 -15.49790 -15.38821 -15.28188 -14.63165 -14.14345 -13.72878 -13.58478 -13.30410 -13.12311 -13.00337 -12.85491 -12.74670 -12.40292 -12.26687 -12.15088 -11.88962 -11.55152 -11.20480 -10.61742 -10.17688 -9.95909 -8.87589 -8.49105 -6.22780 1.29526 1.42324 1.55601 1.77202 2.20563 2.48497 2.62373 3.30897 3.46462 3.85006 4.03719 4.09439 4.20224 4.31881 4.44465 4.57645 4.59959 4.75177 4.76317 4.84898 4.91082 4.92715 5.07425 5.19705 5.36594 5.41400 5.73655 5.91350 6.04654 6.29652 6.57209 6.89530 7.01759 7.29691 7.99625 8.48261 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035611 B = 0.008963 C = 0.007751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.078497 B = 3123.285796 C = 3611.793239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.178 3.822 4 C 0.068 3.932 5 N -0.505 5.505 6 C -0.184 4.184 7 C 0.177 3.823 8 C -0.460 4.460 9 H 0.093 0.907 10 C 0.023 3.977 11 N -0.835 5.835 12 Si 0.999 3.001 13 H -0.256 1.256 14 H -0.273 1.273 15 H -0.259 1.259 16 N -0.482 5.482 17 C 0.136 3.864 18 C -0.157 4.157 19 C -0.156 4.156 20 H 0.050 0.950 21 H 0.059 0.941 22 H 0.095 0.905 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.162 0.838 26 H 0.284 0.716 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.100 0.900 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.907 1.054 -9.229 12.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C 0.100 3.900 4 C -0.186 4.186 5 N -0.226 5.226 6 C -0.332 4.332 7 C 0.064 3.936 8 C -0.495 4.495 9 H 0.111 0.889 10 C -0.190 4.190 11 N -0.463 5.463 12 Si 0.819 3.181 13 H -0.180 1.180 14 H -0.198 1.198 15 H -0.183 1.183 16 N -0.175 5.175 17 C 0.033 3.967 18 C -0.215 4.215 19 C -0.214 4.214 20 H 0.068 0.932 21 H 0.077 0.923 22 H 0.113 0.887 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.179 0.821 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.078 0.906 -8.328 11.637 hybrid contribution 0.935 0.029 -0.457 1.041 sum -7.143 0.935 -8.785 11.361 Atomic orbital electron populations 1.22954 0.79157 1.03798 1.01166 1.88007 1.21768 1.28638 1.95539 1.20233 0.83953 0.84601 1.01189 1.22400 0.94203 1.19416 0.82534 1.69309 1.04820 1.17797 1.30675 1.23278 0.92308 1.23330 0.94253 1.19197 0.83351 0.97410 0.93667 1.18855 0.89149 1.47148 0.94345 0.88902 1.26811 1.03637 0.92117 0.96440 1.69752 1.26883 1.37466 1.12155 0.84995 0.75101 0.80007 0.77996 1.18040 1.19785 1.18301 1.45275 1.05902 1.60129 1.06198 1.21310 0.99420 0.97264 0.78685 1.22158 1.02127 0.96056 1.01162 1.22125 1.02537 0.95673 1.01070 0.93168 0.92271 0.88662 0.91470 0.90675 0.82082 0.90523 0.88355 0.92479 0.88094 0.93423 0.94249 0.88119 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.85 16 2 O -0.42 -15.82 10.69 -148.98 -1.59 -17.42 16 3 C 0.18 6.80 6.06 71.24 0.43 7.23 16 4 C 0.07 3.43 7.50 137.97 1.04 4.46 16 5 N -0.51 -29.69 11.18 -184.79 -2.07 -31.76 16 6 C -0.18 -11.32 10.88 84.85 0.92 -10.40 16 7 C 0.18 9.97 6.30 38.88 0.24 10.22 16 8 C -0.46 -24.24 7.56 23.16 0.18 -24.06 16 9 H 0.09 4.44 4.69 -2.91 -0.01 4.42 16 10 C 0.02 1.19 5.50 85.29 0.47 1.66 16 11 N -0.83 -45.60 10.35 21.86 0.23 -45.37 16 12 Si 1.00 38.14 29.56 68.60 2.03 40.17 16 13 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 14 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 15 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 16 N -0.48 -23.42 2.64 -482.72 -1.27 -24.70 16 17 C 0.14 4.94 3.36 44.99 0.15 5.09 16 18 C -0.16 -5.03 9.21 71.98 0.66 -4.37 16 19 C -0.16 -5.28 9.22 71.98 0.66 -4.62 16 20 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 22 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 24 H 0.08 2.35 7.04 -2.39 -0.02 2.33 16 25 H 0.16 10.47 5.78 -2.91 -0.02 10.45 16 26 H 0.28 14.12 8.30 -92.71 -0.77 13.35 16 27 H 0.10 3.09 6.63 -2.38 -0.02 3.08 16 28 H 0.06 2.10 5.66 -2.39 -0.01 2.09 16 29 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.06 2.17 5.68 -2.39 -0.01 2.16 16 Total: -1.00 -71.01 271.24 4.43 -66.57 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 1.11 Total: 25.43 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 6.01 Total: -12.93 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -3.11 Total: -101.83 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -1.59 Total: -17.42 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -71.01 4.43 -66.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165906.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.324 kcal (2) G-P(sol) polarization free energy of solvation -71.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds