Wall clock time and date at job start Mon Mar 30 2020 03:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00314 * 2 1 3 5 5 C 1.34947 * 126.03830 * 84.71145 * 4 2 1 6 6 C 1.35313 * 107.75062 * 179.84209 * 5 4 2 7 7 C 1.50692 * 126.04445 * 180.16131 * 6 5 4 8 8 H 1.09003 * 109.47073 * 25.33801 * 7 6 5 9 9 O 1.42904 * 109.47322 * 145.33324 * 7 6 5 10 10 C 1.52993 * 109.47320 * 265.33368 * 7 6 5 11 11 C 1.50702 * 109.47395 * 175.00160 * 10 7 6 12 12 H 1.07997 * 119.99824 * 359.97438 * 11 10 7 13 13 C 1.37876 * 120.00150 * 180.02562 * 11 10 7 14 14 N 1.31518 * 119.99902 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00101 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47003 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47361 * 119.99776 * 15 13 11 18 18 H 1.48509 * 109.46856 * 239.99754 * 15 13 11 19 19 C 1.39871 * 107.91369 * 0.42456 * 6 5 4 20 20 N 1.30835 * 108.20756 * 359.73837 * 19 6 5 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.08001 * 126.12572 * 0.02562 * 5 4 2 29 29 H 0.96707 * 113.99528 * 59.99806 * 9 7 6 30 30 H 1.09001 * 109.47316 * 294.99833 * 10 7 6 31 31 H 1.08998 * 109.47423 * 54.99723 * 10 7 6 32 32 H 0.97003 * 120.00071 * 180.02562 * 14 13 11 33 33 H 1.08003 * 125.90056 * 179.71413 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1882 -0.1405 -2.4168 6 6 2.6567 -1.1049 -3.2423 7 6 2.9929 -0.9365 -4.7015 8 1 3.2395 0.1066 -4.8996 9 8 4.1125 -1.7613 -5.0307 10 6 1.7897 -1.3467 -5.5528 11 6 2.0808 -1.0632 -7.0040 12 1 3.0291 -0.6330 -7.2904 13 6 1.1362 -1.3519 -7.9658 14 7 -0.0188 -1.8753 -7.6170 15 14 1.4974 -1.0012 -9.7647 16 1 2.8568 -0.4173 -9.8919 17 1 1.4270 -2.2660 -10.5395 18 1 0.4952 -0.0408 -10.2927 19 6 2.7681 -2.2871 -2.5032 20 7 2.3857 -2.0400 -1.2766 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.9890 0.8863 -2.6857 29 1 3.9640 -2.7048 -4.8790 30 1 1.5982 -2.4118 -5.4220 31 1 0.9132 -0.7790 -5.2404 32 1 -0.6833 -2.0788 -8.2937 33 1 3.1103 -3.2397 -2.8800 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261169994.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:03 Heat of formation + Delta-G solvation = 11.730004 kcal Electronic energy + Delta-G solvation = -15234.283268 eV Core-core repulsion = 12682.419758 eV Total energy + Delta-G solvation = -2551.863509 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.93261 -36.68712 -35.35964 -32.78180 -30.65018 -29.87238 -28.32522 -27.45727 -24.57912 -22.68928 -21.43943 -19.75178 -19.69112 -17.16437 -16.08669 -15.18928 -15.11312 -14.61476 -14.37764 -14.16205 -13.81332 -13.04646 -12.95823 -12.57573 -12.36775 -12.17776 -12.09916 -11.54670 -11.31783 -11.07772 -10.81715 -10.74333 -10.46796 -10.16176 -10.03047 -9.06256 -9.02640 -8.90368 -8.33766 -7.78632 -5.95320 -3.96453 2.24951 2.72969 3.26100 3.35124 3.42651 3.48776 4.43214 4.51627 4.74635 4.90365 5.08993 5.23721 5.28813 5.38069 5.43815 5.50650 5.54204 5.63954 5.82051 5.94923 6.00439 6.05004 6.29139 6.74922 6.82914 7.04832 7.37912 7.63246 7.75683 8.02552 8.06966 8.44120 8.63373 9.11275 9.66985 11.15944 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039667 B = 0.006114 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.710564 B = 4578.718259 C = 4819.113905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.158 3.842 3 C -0.164 4.164 4 N -0.374 5.374 5 C 0.052 3.948 6 C -0.244 4.244 7 C 0.182 3.818 8 H 0.088 0.912 9 O -0.557 6.557 10 C 0.002 3.998 11 C -0.509 4.509 12 H 0.061 0.939 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.286 1.286 19 C 0.055 3.945 20 N -0.307 5.307 21 H 0.073 0.927 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.168 0.832 29 H 0.364 0.636 30 H 0.019 0.981 31 H 0.022 0.978 32 H 0.258 0.742 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.257 4.677 14.486 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.056 3.944 3 C -0.222 4.222 4 N -0.158 5.158 5 C -0.093 4.093 6 C -0.255 4.255 7 C 0.122 3.878 8 H 0.106 0.894 9 O -0.361 6.361 10 C -0.035 4.035 11 C -0.547 4.547 12 H 0.079 0.921 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.720 3.280 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.131 4.131 20 N -0.128 5.128 21 H 0.091 0.909 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.115 0.885 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.185 0.815 29 H 0.209 0.791 30 H 0.037 0.963 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.133 4.796 15.554 16.416 hybrid contribution -0.279 -0.043 -1.683 1.707 sum 1.854 4.753 13.870 14.779 Atomic orbital electron populations 1.22252 0.93935 1.03310 1.02904 1.21133 0.94638 0.92593 0.86046 1.22190 1.02258 0.94295 1.03502 1.48679 1.51654 1.07420 1.08087 1.22099 1.02188 0.99752 0.85214 1.21310 1.11187 0.93335 0.99662 1.20400 0.87860 0.94415 0.85141 0.89422 1.86483 1.39686 1.20629 1.89308 1.19731 0.92268 0.97242 0.94249 1.21254 1.01132 1.40837 0.91476 0.92120 1.25025 0.95120 0.95451 0.99050 1.69990 1.06404 1.44097 1.33396 0.86531 0.78319 0.77870 0.85270 1.19634 1.21110 1.21202 1.23589 0.99539 0.99209 0.90759 1.77207 1.21531 0.93308 1.20711 0.90854 0.91662 0.91679 0.88484 0.90305 0.91557 0.91353 0.81506 0.79058 0.96285 0.95943 0.93191 0.80502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 9.52 37.16 0.35 -1.32 16 2 C 0.16 1.75 3.93 -67.93 -0.27 1.48 16 3 C -0.16 -1.40 8.84 37.16 0.33 -1.07 16 4 N -0.37 -5.76 3.52 -54.86 -0.19 -5.95 16 5 C 0.05 0.85 10.50 -17.22 -0.18 0.67 16 6 C -0.24 -4.54 5.15 -105.06 -0.54 -5.08 16 7 C 0.18 3.85 3.37 -27.89 -0.09 3.75 16 8 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 9 O -0.56 -11.61 12.98 -35.23 -0.46 -12.06 16 10 C 0.00 0.06 4.64 -27.89 -0.13 -0.07 16 11 C -0.51 -14.44 8.88 -34.44 -0.31 -14.75 16 12 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 15 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 C 0.05 0.97 11.40 -17.37 -0.20 0.77 16 20 N -0.31 -5.39 12.58 30.63 0.39 -5.00 16 21 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.59 7.16 -51.93 -0.37 0.21 16 28 H 0.17 2.30 7.27 -52.49 -0.38 1.92 16 29 H 0.36 6.41 8.24 45.56 0.38 6.78 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.18 2.67 7.64 -52.48 -0.40 2.27 16 LS Contribution 284.55 15.07 4.29 4.29 Total: -1.00 -33.32 284.55 -5.52 -38.84 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.12 Total: 3.57 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -1.13 Total: -14.16 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.93 Total: -37.39 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.46 Total: -12.06 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.32 -5.52 -38.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261169994.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.571 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds