Wall clock time and date at job start Mon Mar 30 2020 03:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00314 * 2 1 3 5 5 C 1.34947 * 126.03830 * 84.71145 * 4 2 1 6 6 C 1.35313 * 107.75062 * 179.84209 * 5 4 2 7 7 C 1.50692 * 126.04445 * 180.16131 * 6 5 4 8 8 H 1.09003 * 109.47073 * 25.33801 * 7 6 5 9 9 O 1.42904 * 109.47322 * 145.33324 * 7 6 5 10 10 C 1.52993 * 109.47320 * 265.33368 * 7 6 5 11 11 C 1.50702 * 109.47395 * 175.00160 * 10 7 6 12 12 H 1.07997 * 119.99824 * 359.97438 * 11 10 7 13 13 C 1.37876 * 120.00150 * 180.02562 * 11 10 7 14 14 N 1.31518 * 119.99902 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00101 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47003 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47361 * 119.99776 * 15 13 11 18 18 H 1.48509 * 109.46856 * 239.99754 * 15 13 11 19 19 C 1.39871 * 107.91369 * 0.42456 * 6 5 4 20 20 N 1.30835 * 108.20756 * 359.73837 * 19 6 5 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.08001 * 126.12572 * 0.02562 * 5 4 2 29 29 H 0.96707 * 113.99528 * 59.99806 * 9 7 6 30 30 H 1.09001 * 109.47316 * 294.99833 * 10 7 6 31 31 H 1.08998 * 109.47423 * 54.99723 * 10 7 6 32 32 H 0.97003 * 120.00071 * 180.02562 * 14 13 11 33 33 H 1.08003 * 125.90056 * 179.71413 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1882 -0.1405 -2.4168 6 6 2.6567 -1.1049 -3.2423 7 6 2.9929 -0.9365 -4.7015 8 1 3.2395 0.1066 -4.8996 9 8 4.1125 -1.7613 -5.0307 10 6 1.7897 -1.3467 -5.5528 11 6 2.0808 -1.0632 -7.0040 12 1 3.0291 -0.6330 -7.2904 13 6 1.1362 -1.3519 -7.9658 14 7 -0.0188 -1.8753 -7.6170 15 14 1.4974 -1.0012 -9.7647 16 1 2.8568 -0.4173 -9.8919 17 1 1.4270 -2.2660 -10.5395 18 1 0.4952 -0.0408 -10.2927 19 6 2.7681 -2.2871 -2.5032 20 7 2.3857 -2.0400 -1.2766 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.9890 0.8863 -2.6857 29 1 3.9640 -2.7048 -4.8790 30 1 1.5982 -2.4118 -5.4220 31 1 0.9132 -0.7790 -5.2404 32 1 -0.6833 -2.0788 -8.2937 33 1 3.1103 -3.2397 -2.8800 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261169994.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:03 Heat of formation + Delta-G solvation = -11.815001 kcal Electronic energy + Delta-G solvation = -15235.304256 eV Core-core repulsion = 12682.419758 eV Total energy + Delta-G solvation = -2552.884498 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.22488 -38.25622 -36.44102 -34.92163 -32.29213 -31.09169 -30.06369 -28.22078 -26.42334 -23.95112 -23.19414 -21.14986 -20.86172 -18.79415 -17.90018 -16.86490 -16.23787 -16.14829 -15.84578 -15.65493 -15.05444 -14.68990 -14.26629 -13.86139 -13.68990 -13.21799 -13.09213 -13.00119 -12.74147 -12.59894 -12.44331 -12.30939 -12.14240 -11.98617 -11.60719 -11.11691 -10.64295 -10.54739 -10.30485 -9.21988 -8.15734 -6.25264 0.95967 1.41926 1.42938 1.56692 1.62656 1.85760 2.45169 3.16940 3.51176 3.87257 3.93214 3.98057 4.05295 4.10568 4.42706 4.48969 4.62992 4.69272 4.80112 4.80674 4.90261 5.00361 5.12690 5.20024 5.23092 5.46728 5.66162 5.75664 5.83778 6.19356 6.28226 6.74949 6.89608 7.06838 7.43098 8.95623 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039667 B = 0.006114 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.710564 B = 4578.718259 C = 4819.113905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 C -0.158 4.158 4 N -0.367 5.367 5 C 0.062 3.938 6 C -0.275 4.275 7 C 0.200 3.800 8 H 0.086 0.914 9 O -0.566 6.566 10 C 0.012 3.988 11 C -0.526 4.526 12 H 0.058 0.942 13 C -0.001 4.001 14 N -0.936 5.936 15 Si 0.963 3.037 16 H -0.264 1.264 17 H -0.280 1.280 18 H -0.278 1.278 19 C 0.046 3.954 20 N -0.326 5.326 21 H 0.107 0.893 22 H 0.044 0.956 23 H 0.056 0.944 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.193 0.807 29 H 0.376 0.624 30 H -0.005 1.005 31 H -0.002 1.002 32 H 0.262 0.738 33 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.587 5.907 15.069 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 C -0.216 4.216 4 N -0.151 5.151 5 C -0.084 4.084 6 C -0.287 4.287 7 C 0.140 3.860 8 H 0.104 0.896 9 O -0.371 6.371 10 C -0.026 4.026 11 C -0.564 4.564 12 H 0.076 0.924 13 C -0.198 4.198 14 N -0.577 5.577 15 Si 0.788 3.212 16 H -0.188 1.188 17 H -0.206 1.206 18 H -0.204 1.204 19 C -0.139 4.139 20 N -0.148 5.148 21 H 0.126 0.874 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.123 0.877 25 H 0.128 0.872 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.209 0.791 29 H 0.224 0.776 30 H 0.013 0.987 31 H 0.016 0.984 32 H 0.070 0.930 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.468 6.019 16.170 17.430 hybrid contribution -0.418 -0.411 -1.766 1.860 sum 2.050 5.608 14.405 15.593 Atomic orbital electron populations 1.22234 0.93072 1.02383 1.04192 1.21621 0.95325 0.93898 0.84612 1.22193 1.01901 0.92440 1.05078 1.49105 1.50217 1.06762 1.08988 1.22448 1.00289 1.00453 0.85257 1.21097 1.14066 0.94817 0.98681 1.19959 0.85826 0.94133 0.86125 0.89575 1.86431 1.39406 1.21758 1.89541 1.19593 0.93477 0.95259 0.94227 1.21599 1.01033 1.40711 0.93039 0.92392 1.25916 0.94843 0.95128 1.03873 1.70113 1.07418 1.45089 1.35038 0.85433 0.78490 0.77898 0.79424 1.18820 1.20561 1.20386 1.23858 0.99582 0.99721 0.90777 1.77155 1.22155 0.94798 1.20675 0.87408 0.93668 0.92528 0.87679 0.87225 0.92076 0.91296 0.79061 0.77604 0.98665 0.98379 0.92951 0.79093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.52 71.98 0.69 -2.25 16 2 C 0.15 2.91 3.93 44.99 0.18 3.09 16 3 C -0.16 -2.23 8.84 71.98 0.64 -1.59 16 4 N -0.37 -10.86 3.52 -327.49 -1.15 -12.01 16 5 C 0.06 1.98 10.50 83.54 0.88 2.85 16 6 C -0.28 -10.23 5.15 -20.15 -0.10 -10.33 16 7 C 0.20 8.51 3.37 29.84 0.10 8.61 16 8 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 9 O -0.57 -23.53 12.98 -148.98 -1.93 -25.46 16 10 C 0.01 0.63 4.64 29.85 0.14 0.77 16 11 C -0.53 -30.16 8.88 25.60 0.23 -29.94 16 12 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 13 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 14 N -0.94 -57.30 13.29 21.45 0.28 -57.02 16 15 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 16 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 C 0.05 1.61 11.40 85.24 0.97 2.58 16 20 N -0.33 -11.30 12.58 -57.02 -0.72 -12.02 16 21 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 0.98 7.16 -2.39 -0.02 0.96 16 28 H 0.19 4.95 7.27 -2.91 -0.02 4.92 16 29 H 0.38 13.32 8.24 -74.05 -0.61 12.71 16 30 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.19 5.81 7.64 -2.91 -0.02 5.79 16 Total: -1.00 -71.43 284.55 3.16 -68.27 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.48 Total: 17.01 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 4.17 Total: -25.77 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -1.59 Total: -81.05 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -1.93 Total: -25.46 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -71.43 3.16 -68.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261169994.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.459 kcal (2) G-P(sol) polarization free energy of solvation -71.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds