Wall clock time and date at job start Mon Mar 30 2020 03:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 N 1.46506 * 109.46831 * 120.00228 * 2 1 3 5 5 N 1.40085 * 126.03259 * 300.02218 * 4 2 1 6 6 C 1.30844 * 108.20270 * 180.02562 * 5 4 2 7 7 C 1.39869 * 108.20137 * 359.97438 * 6 5 4 8 8 C 1.34946 * 126.03666 * 119.71597 * 4 2 1 9 9 C 1.50697 * 126.12836 * 359.97438 * 8 4 2 10 10 H 1.08995 * 109.46882 * 24.99864 * 9 8 4 11 11 O 1.42902 * 109.46995 * 145.00088 * 9 8 4 12 12 C 1.52998 * 109.46962 * 264.99879 * 9 8 4 13 13 C 1.50701 * 109.46805 * 175.00043 * 12 9 8 14 14 H 1.07996 * 120.00302 * 0.02562 * 13 12 9 15 15 C 1.37880 * 120.00127 * 180.02562 * 13 12 9 16 16 N 1.31526 * 119.99568 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00542 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47117 * 59.99868 * 17 15 13 19 19 H 1.48499 * 109.47679 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47024 * 300.00233 * 17 15 13 21 21 H 1.09001 * 109.46812 * 300.00216 * 1 2 3 22 22 H 1.09002 * 109.46935 * 59.99874 * 1 2 3 23 23 H 1.08992 * 109.47061 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46812 * 239.99783 * 2 1 3 25 25 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 26 26 H 1.08996 * 109.46952 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.07995 * 125.89851 * 179.97438 * 6 5 4 29 29 H 1.08000 * 126.04155 * 180.02562 * 7 6 5 30 30 H 0.96696 * 113.99855 * 60.00113 * 11 9 8 31 31 H 1.08996 * 109.47452 * 294.99787 * 12 9 8 32 32 H 1.08999 * 109.47184 * 55.00488 * 12 9 8 33 33 H 0.97000 * 119.99470 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 7 1.7586 -0.3242 2.5231 6 6 2.3632 -1.1781 3.3088 7 6 3.0258 -2.1146 2.5087 8 6 2.7929 -1.7956 1.2144 9 6 3.3091 -2.5387 0.0093 10 1 3.3601 -1.8598 -0.8418 11 8 4.6134 -3.0515 0.2886 12 6 2.3650 -3.6973 -0.3183 13 6 2.8124 -4.3646 -1.5933 14 1 3.6833 -3.9993 -2.1172 15 6 2.1100 -5.4417 -2.0909 16 7 1.0498 -5.8869 -1.4526 17 14 2.6641 -6.2685 -3.6716 18 1 4.0445 -6.7885 -3.5007 19 1 1.7472 -7.3923 -3.9903 20 1 2.6408 -5.2814 -4.7810 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.1301 1.4423 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 2.3524 -1.1625 4.3886 29 1 3.6152 -2.9480 2.8615 30 1 4.6434 -3.6642 1.0360 31 1 2.3822 -4.4214 0.4961 32 1 1.3517 -3.3158 -0.4442 33 1 0.5554 -6.6444 -1.8029 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261172401.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:06 Heat of formation + Delta-G solvation = 9.430435 kcal Electronic energy + Delta-G solvation = -15647.758083 eV Core-core repulsion = 13095.794856 eV Total energy + Delta-G solvation = -2551.963226 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.91190 -36.61665 -35.39991 -32.93667 -30.95805 -29.38986 -28.55564 -27.18135 -24.82977 -22.67846 -21.71209 -20.02941 -19.07030 -17.32609 -16.03905 -15.33725 -14.80757 -14.61617 -14.44399 -14.04294 -13.77200 -13.22303 -12.79528 -12.56450 -12.30110 -12.12504 -11.87755 -11.26550 -11.25172 -11.10195 -10.93414 -10.77668 -10.55977 -10.31746 -10.11724 -9.29608 -9.21934 -8.70596 -8.45284 -8.02250 -6.07345 -4.10351 2.32613 2.84687 3.27191 3.30675 3.35137 3.38472 4.40527 4.67450 5.03085 5.06674 5.13190 5.21779 5.29830 5.35746 5.60467 5.68027 5.75025 5.82282 5.90024 6.07066 6.15697 6.25791 6.31390 6.45516 6.65931 7.08941 7.40059 7.43828 7.52873 7.88849 8.13258 8.24406 8.36453 8.95629 9.53875 11.03620 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.030790 B = 0.007845 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.173745 B = 3568.291036 C = 3891.750391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 C -0.157 4.157 4 N -0.358 5.358 5 N -0.308 5.308 6 C 0.041 3.959 7 C -0.282 4.282 8 C 0.077 3.923 9 C 0.169 3.831 10 H 0.094 0.906 11 O -0.546 6.546 12 C 0.007 3.993 13 C -0.516 4.516 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.277 1.277 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.105 0.895 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.176 0.824 29 H 0.141 0.859 30 H 0.371 0.629 31 H 0.026 0.974 32 H 0.024 0.976 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 10.012 4.377 10.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 C -0.215 4.215 4 N -0.142 5.142 5 N -0.129 5.129 6 C -0.144 4.144 7 C -0.311 4.311 8 C -0.051 4.051 9 C 0.108 3.892 10 H 0.112 0.888 11 O -0.350 6.350 12 C -0.031 4.031 13 C -0.554 4.554 14 H 0.080 0.920 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 H 0.085 0.915 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.123 0.877 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.193 0.807 29 H 0.159 0.841 30 H 0.218 0.782 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.362 11.370 3.672 11.954 hybrid contribution 0.464 -1.672 -0.210 1.748 sum 0.825 9.698 3.462 10.330 Atomic orbital electron populations 1.22102 0.93393 1.03446 1.02717 1.21321 0.95689 0.93575 0.84405 1.22109 1.01661 0.94805 1.02962 1.48649 1.39382 1.21131 1.05069 1.77146 1.24609 1.24339 0.86812 1.23672 0.97141 0.93977 0.99633 1.21075 1.12600 1.06078 0.91343 1.22516 0.94397 0.89224 0.98952 1.20752 0.84195 0.94945 0.89319 0.88805 1.86515 1.28407 1.65016 1.55049 1.19705 0.93976 0.91608 0.97827 1.21065 1.12334 1.14404 1.07640 0.92046 1.25016 0.94922 0.96964 0.97488 1.69966 1.18062 1.25902 1.39451 0.86594 0.78586 0.78980 0.83483 1.20091 1.21328 1.20225 0.91539 0.90946 0.91534 0.87695 0.91410 0.92225 0.90888 0.80662 0.84097 0.78186 0.95589 0.95787 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.45 37.16 0.35 -1.85 16 2 C 0.15 2.28 3.64 -67.93 -0.25 2.03 16 3 C -0.16 -1.95 9.45 37.16 0.35 -1.59 16 4 N -0.36 -6.37 3.28 -50.69 -0.17 -6.53 16 5 N -0.31 -5.45 12.43 30.62 0.38 -5.07 16 6 C 0.04 0.67 12.03 -17.36 -0.21 0.46 16 7 C -0.28 -4.90 10.17 -40.01 -0.41 -5.31 16 8 C 0.08 1.47 6.00 -82.26 -0.49 0.98 16 9 C 0.17 3.47 3.07 -27.89 -0.09 3.39 16 10 H 0.09 1.91 6.88 -51.93 -0.36 1.55 16 11 O -0.55 -10.98 12.97 -35.23 -0.46 -11.44 16 12 C 0.01 0.16 4.64 -27.88 -0.13 0.03 16 13 C -0.52 -14.12 8.88 -34.44 -0.31 -14.42 16 14 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 15 C 0.06 1.61 5.46 -17.81 -0.10 1.51 16 16 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 17 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 21 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.11 1.59 6.56 -51.93 -0.34 1.25 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.18 2.15 8.06 -52.49 -0.42 1.73 16 29 H 0.14 2.16 7.57 -52.49 -0.40 1.76 16 30 H 0.37 6.34 8.20 45.56 0.37 6.71 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 284.04 15.07 4.28 4.28 Total: -1.00 -31.38 284.04 -5.59 -36.97 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.07 Total: 5.76 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -1.27 Total: -14.78 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.95 Total: -37.10 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.46 Total: -11.44 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.38 -5.59 -36.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261172401.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.398 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds