Wall clock time and date at job start Mon Mar 30 2020 03:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 N 1.46506 * 109.46831 * 120.00228 * 2 1 3 5 5 N 1.40085 * 126.03259 * 300.02218 * 4 2 1 6 6 C 1.30844 * 108.20270 * 180.02562 * 5 4 2 7 7 C 1.39869 * 108.20137 * 359.97438 * 6 5 4 8 8 C 1.34946 * 126.03666 * 119.71597 * 4 2 1 9 9 C 1.50697 * 126.12836 * 359.97438 * 8 4 2 10 10 H 1.08995 * 109.46882 * 24.99864 * 9 8 4 11 11 O 1.42902 * 109.46995 * 145.00088 * 9 8 4 12 12 C 1.52998 * 109.46962 * 264.99879 * 9 8 4 13 13 C 1.50701 * 109.46805 * 175.00043 * 12 9 8 14 14 H 1.07996 * 120.00302 * 0.02562 * 13 12 9 15 15 C 1.37880 * 120.00127 * 180.02562 * 13 12 9 16 16 N 1.31526 * 119.99568 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00542 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47117 * 59.99868 * 17 15 13 19 19 H 1.48499 * 109.47679 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47024 * 300.00233 * 17 15 13 21 21 H 1.09001 * 109.46812 * 300.00216 * 1 2 3 22 22 H 1.09002 * 109.46935 * 59.99874 * 1 2 3 23 23 H 1.08992 * 109.47061 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46812 * 239.99783 * 2 1 3 25 25 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 26 26 H 1.08996 * 109.46952 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.07995 * 125.89851 * 179.97438 * 6 5 4 29 29 H 1.08000 * 126.04155 * 180.02562 * 7 6 5 30 30 H 0.96696 * 113.99855 * 60.00113 * 11 9 8 31 31 H 1.08996 * 109.47452 * 294.99787 * 12 9 8 32 32 H 1.08999 * 109.47184 * 55.00488 * 12 9 8 33 33 H 0.97000 * 119.99470 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 7 1.7586 -0.3242 2.5231 6 6 2.3632 -1.1781 3.3088 7 6 3.0258 -2.1146 2.5087 8 6 2.7929 -1.7956 1.2144 9 6 3.3091 -2.5387 0.0093 10 1 3.3601 -1.8598 -0.8418 11 8 4.6134 -3.0515 0.2886 12 6 2.3650 -3.6973 -0.3183 13 6 2.8124 -4.3646 -1.5933 14 1 3.6833 -3.9993 -2.1172 15 6 2.1100 -5.4417 -2.0909 16 7 1.0498 -5.8869 -1.4526 17 14 2.6641 -6.2685 -3.6716 18 1 4.0445 -6.7885 -3.5007 19 1 1.7472 -7.3923 -3.9903 20 1 2.6408 -5.2814 -4.7810 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.1301 1.4423 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 2.3524 -1.1625 4.3886 29 1 3.6152 -2.9480 2.8615 30 1 4.6434 -3.6642 1.0360 31 1 2.3822 -4.4214 0.4961 32 1 1.3517 -3.3158 -0.4442 33 1 0.5554 -6.6444 -1.8029 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261172401.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:06 Heat of formation + Delta-G solvation = -12.157013 kcal Electronic energy + Delta-G solvation = -15648.694185 eV Core-core repulsion = 13095.794856 eV Total energy + Delta-G solvation = -2552.899328 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.26348 -38.27382 -36.57270 -35.01101 -32.53746 -30.85493 -30.18517 -28.23481 -26.71283 -23.93726 -23.54102 -21.39531 -20.47288 -18.91728 -17.94001 -17.01939 -16.45475 -15.99041 -15.90948 -15.49723 -15.19515 -14.62955 -14.29671 -14.04757 -13.84943 -13.24451 -13.13931 -12.98589 -12.81248 -12.57101 -12.48087 -12.37178 -12.23131 -12.13373 -11.56878 -11.29358 -10.91283 -10.60068 -10.12107 -9.41680 -8.21413 -6.32120 0.93229 1.41657 1.43845 1.51974 1.58284 1.94768 2.41094 3.11639 3.46349 3.59222 3.69536 3.94522 4.00691 4.14112 4.21726 4.60352 4.63179 4.65240 4.67473 4.76474 4.83732 4.90416 5.13162 5.18163 5.20450 5.32305 5.54146 5.74128 5.83055 6.08953 6.17137 6.76061 6.80709 6.87233 7.36772 8.89639 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.030790 B = 0.007845 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.173745 B = 3568.291036 C = 3891.750391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.138 3.862 3 C -0.146 4.146 4 N -0.363 5.363 5 N -0.320 5.320 6 C 0.043 3.957 7 C -0.285 4.285 8 C 0.051 3.949 9 C 0.187 3.813 10 H 0.094 0.906 11 O -0.552 6.552 12 C 0.018 3.982 13 C -0.531 4.531 14 H 0.061 0.939 15 C 0.004 3.996 16 N -0.931 5.931 17 Si 0.963 3.037 18 H -0.269 1.269 19 H -0.284 1.284 20 H -0.266 1.266 21 H 0.066 0.934 22 H 0.102 0.898 23 H 0.037 0.963 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.102 0.898 28 H 0.215 0.785 29 H 0.158 0.842 30 H 0.384 0.616 31 H 0.003 0.997 32 H -0.002 1.002 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.718 10.766 4.148 11.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.037 3.963 3 C -0.204 4.204 4 N -0.147 5.147 5 N -0.142 5.142 6 C -0.142 4.142 7 C -0.315 4.315 8 C -0.078 4.078 9 C 0.126 3.874 10 H 0.111 0.889 11 O -0.357 6.357 12 C -0.020 4.020 13 C -0.569 4.569 14 H 0.080 0.920 15 C -0.194 4.194 16 N -0.571 5.571 17 Si 0.788 3.212 18 H -0.194 1.194 19 H -0.210 1.210 20 H -0.191 1.191 21 H 0.085 0.915 22 H 0.120 0.880 23 H 0.056 0.944 24 H 0.115 0.885 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.121 0.879 28 H 0.231 0.769 29 H 0.175 0.825 30 H 0.232 0.768 31 H 0.021 0.979 32 H 0.016 0.984 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.965 12.138 3.446 12.655 hybrid contribution 0.267 -1.901 -0.080 1.921 sum 1.232 10.237 3.365 10.847 Atomic orbital electron populations 1.22054 0.92677 1.01935 1.04197 1.21626 0.96353 0.94939 0.83390 1.22042 1.01170 0.92935 1.04245 1.48930 1.39039 1.20938 1.05792 1.77115 1.25035 1.25084 0.86940 1.24297 0.95835 0.92799 1.01310 1.21439 1.12425 1.06605 0.90997 1.22325 0.96116 0.90465 0.98881 1.20271 0.83327 0.93403 0.90436 0.88858 1.86475 1.27865 1.65491 1.55912 1.19496 0.93663 0.92516 0.96287 1.21413 1.12269 1.14688 1.08529 0.92030 1.25898 0.94892 0.97668 1.00920 1.70094 1.19272 1.26495 1.41230 0.85530 0.78272 0.78017 0.79424 1.19352 1.20960 1.19129 0.91529 0.87953 0.94423 0.88486 0.91719 0.92836 0.87924 0.76869 0.82454 0.76755 0.97863 0.98413 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 9.45 71.98 0.68 -3.43 16 2 C 0.14 4.07 3.64 44.99 0.16 4.23 16 3 C -0.15 -3.37 9.45 71.98 0.68 -2.69 16 4 N -0.36 -12.76 3.28 -314.28 -1.03 -13.79 16 5 N -0.32 -10.96 12.43 -57.02 -0.71 -11.67 16 6 C 0.04 1.30 12.03 85.23 1.03 2.33 16 7 C -0.29 -9.62 10.17 21.99 0.22 -9.40 16 8 C 0.05 1.92 6.00 41.41 0.25 2.16 16 9 C 0.19 7.75 3.07 29.85 0.09 7.84 16 10 H 0.09 3.83 6.88 -2.39 -0.02 3.82 16 11 O -0.55 -21.95 12.97 -148.98 -1.93 -23.88 16 12 C 0.02 0.93 4.64 29.85 0.14 1.07 16 13 C -0.53 -29.32 8.88 25.60 0.23 -29.09 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.00 0.25 5.46 84.65 0.46 0.71 16 16 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 17 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.10 2.97 6.56 -2.39 -0.02 2.95 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.21 4.57 8.06 -2.91 -0.02 4.54 16 29 H 0.16 4.60 7.57 -2.91 -0.02 4.58 16 30 H 0.38 12.89 8.20 -74.06 -0.61 12.29 16 31 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -66.90 284.04 3.07 -63.83 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.49 Total: 21.31 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 3.94 Total: -26.27 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -1.45 Total: -80.57 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -1.93 Total: -23.88 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -66.90 3.07 -63.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261172401.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.674 kcal (2) G-P(sol) polarization free energy of solvation -66.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds