Wall clock time and date at job start Mon Mar 30 2020 02:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32859 * 126.04346 * 2 1 4 4 C 1.50694 * 126.04426 * 359.93871 * 3 2 1 5 5 N 1.38697 * 107.91460 * 179.97438 * 3 2 1 6 6 C 1.46498 * 125.98596 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.47267 * 0.02562 * 6 5 3 8 8 C 1.52995 * 109.47498 * 239.99598 * 6 5 3 9 9 C 1.50707 * 109.46934 * 119.99734 * 6 5 3 10 10 H 1.07995 * 120.00123 * 0.02562 * 9 6 5 11 11 C 1.37875 * 119.99802 * 180.02562 * 9 6 5 12 12 N 1.31519 * 120.00185 * 0.02562 * 11 9 6 13 13 Si 1.86801 * 119.99955 * 180.02562 * 11 9 6 14 14 H 1.48502 * 109.47037 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47239 * 120.00122 * 13 11 9 16 16 H 1.48501 * 109.46909 * 239.99946 * 13 11 9 17 17 C 1.34764 * 108.03151 * 359.97438 * 5 3 2 18 18 O 1.21795 * 125.94770 * 179.74266 * 17 5 3 19 19 N 1.34759 * 108.10547 * 0.02562 * 17 5 3 20 20 C 1.46498 * 125.98589 * 179.97438 * 19 17 5 21 21 H 1.09004 * 109.46588 * 89.99796 * 1 2 3 22 22 H 1.08993 * 109.47121 * 210.00458 * 1 2 3 23 23 H 1.09001 * 109.46989 * 330.00617 * 1 2 3 24 24 H 1.08998 * 109.47713 * 270.04413 * 4 3 2 25 25 H 1.08997 * 109.47208 * 30.04809 * 4 3 2 26 26 H 1.08998 * 109.47107 * 150.04550 * 4 3 2 27 27 H 1.09003 * 109.46787 * 60.00004 * 8 6 5 28 28 H 1.09001 * 109.47587 * 179.97438 * 8 6 5 29 29 H 1.08997 * 109.47307 * 300.00521 * 8 6 5 30 30 H 0.96994 * 119.99813 * 180.02562 * 12 11 9 31 31 H 1.09004 * 109.46789 * 0.02722 * 20 19 17 32 32 H 1.09005 * 109.47040 * 120.02524 * 20 19 17 33 33 H 1.08997 * 109.47197 * 240.02977 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2888 1.0743 0.0000 4 6 1.8253 2.5082 -0.0013 5 7 3.6069 0.6427 0.0006 6 6 4.7938 1.5014 0.0013 7 1 4.4858 2.5470 0.0018 8 6 5.6305 1.2162 -1.2474 9 6 5.6166 1.2201 1.2323 10 1 5.2884 0.4758 1.9427 11 6 6.7883 1.9129 1.4514 12 7 7.1877 2.8197 0.5865 13 14 7.8085 1.5638 2.9768 14 1 7.1461 0.5082 3.7844 15 1 9.1612 1.1030 2.5728 16 1 7.9289 2.8031 3.7860 17 6 3.6046 -0.7049 0.0015 18 8 4.5894 -1.4216 -0.0022 19 7 2.3230 -1.1216 0.0009 20 6 1.8709 -2.5150 0.0011 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8901 0.5137 24 1 1.7137 2.8531 -1.0292 25 1 0.8667 2.5806 0.5124 26 1 2.5603 3.1280 0.5121 27 1 5.0354 1.4197 -2.1377 28 1 6.5134 1.8555 -1.2471 29 1 5.9385 0.1707 -1.2475 30 1 8.0122 3.3068 0.7406 31 1 2.7363 -3.1778 0.0022 32 1 1.2691 -2.7016 0.8906 33 1 1.2709 -2.7024 -0.8894 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261175514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:02 Heat of formation + Delta-G solvation = -14.520256 kcal Electronic energy + Delta-G solvation = -16080.617824 eV Core-core repulsion = 13527.616018 eV Total energy + Delta-G solvation = -2553.001806 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.07140 -37.85383 -37.24589 -34.89454 -33.15657 -31.69788 -29.92153 -27.95567 -27.36965 -25.11843 -23.67548 -21.10507 -20.85178 -18.51335 -17.81212 -17.20261 -16.72641 -16.22898 -15.58926 -14.83976 -14.76713 -14.37682 -14.34633 -13.98771 -13.63696 -13.51869 -13.31631 -13.19712 -12.95903 -12.87058 -12.83250 -12.47601 -12.39399 -12.17335 -11.81906 -11.40087 -11.00531 -10.57553 -10.32516 -8.32968 -8.16487 -6.37376 1.32195 1.35057 1.42579 1.47084 1.63634 2.12128 2.35927 2.83609 3.03040 3.96372 4.21312 4.32974 4.43416 4.52487 4.53384 4.67910 4.73812 4.78364 4.85857 4.88238 5.00747 5.12603 5.20043 5.25621 5.28625 5.45575 5.64133 5.69912 5.84166 6.05645 6.29437 6.65631 6.84719 7.27591 7.62325 8.79969 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.033002 B = 0.009351 C = 0.008519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.236090 B = 2993.560470 C = 3285.934536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.008 4.008 3 C -0.009 4.009 4 C -0.072 4.072 5 N -0.519 5.519 6 C 0.285 3.715 7 H 0.053 0.947 8 C -0.137 4.137 9 C -0.534 4.534 10 H 0.031 0.969 11 C 0.024 3.976 12 N -0.909 5.909 13 Si 0.961 3.039 14 H -0.284 1.284 15 H -0.276 1.276 16 H -0.263 1.263 17 C 0.620 3.380 18 O -0.627 6.627 19 N -0.540 5.540 20 C 0.096 3.904 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.051 0.949 27 H 0.030 0.970 28 H 0.082 0.918 29 H 0.019 0.981 30 H 0.270 0.730 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.150 -2.095 -1.514 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.112 4.112 3 C -0.114 4.114 4 C -0.129 4.129 5 N -0.235 5.235 6 C 0.184 3.816 7 H 0.071 0.929 8 C -0.195 4.195 9 C -0.572 4.572 10 H 0.049 0.951 11 C -0.176 4.176 12 N -0.548 5.548 13 Si 0.786 3.214 14 H -0.209 1.209 15 H -0.202 1.202 16 H -0.187 1.187 17 C 0.323 3.677 18 O -0.510 6.510 19 N -0.261 5.261 20 C -0.044 4.044 21 H 0.106 0.894 22 H 0.099 0.901 23 H 0.117 0.883 24 H 0.103 0.897 25 H 0.131 0.869 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.100 0.900 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.276 -2.470 -1.551 15.552 hybrid contribution 1.331 -0.398 0.676 1.545 sum -13.945 -2.868 -0.875 14.264 Atomic orbital electron populations 1.20337 0.82976 1.04742 1.03968 1.20591 0.95868 0.82883 1.11883 1.20826 0.81999 0.98384 1.10226 1.20336 1.02221 0.86822 1.03541 1.46074 1.07824 1.06048 1.63597 1.18688 0.79842 0.88685 0.94351 0.92898 1.21906 1.01628 1.00106 0.95866 1.21336 1.08106 1.21352 1.06438 0.95072 1.25537 0.97690 0.94544 0.99842 1.69925 1.23787 1.24707 1.36333 0.85478 0.78364 0.78217 0.79372 1.20923 1.20184 1.18732 1.16584 0.83992 0.83118 0.84046 1.90878 1.36900 1.59865 1.63377 1.45443 1.05128 1.08386 1.67116 1.21850 1.00905 0.77193 1.04464 0.89399 0.90132 0.88326 0.89733 0.86927 0.92965 0.95142 0.89971 0.96189 0.92093 0.91559 0.88835 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 9.91 71.24 0.71 -0.35 16 2 C -0.01 -0.24 6.91 40.30 0.28 0.04 16 3 C -0.01 -0.33 6.91 40.29 0.28 -0.05 16 4 C -0.07 -1.96 9.74 71.23 0.69 -1.27 16 5 N -0.52 -25.34 2.64 -623.16 -1.65 -26.99 16 6 C 0.28 15.54 2.85 44.25 0.13 15.67 16 7 H 0.05 2.87 6.77 -2.39 -0.02 2.86 16 8 C -0.14 -7.44 9.00 71.98 0.65 -6.79 16 9 C -0.53 -32.32 8.24 25.60 0.21 -32.11 16 10 H 0.03 2.02 7.72 -2.91 -0.02 2.00 16 11 C 0.02 1.39 5.30 84.65 0.45 1.84 16 12 N -0.91 -52.42 11.32 21.45 0.24 -52.18 16 13 Si 0.96 46.53 29.54 68.60 2.03 48.56 16 14 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 15 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 16 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 17 C 0.62 31.31 7.85 179.06 1.41 32.72 16 18 O -0.63 -37.27 16.05 -4.65 -0.07 -37.35 16 19 N -0.54 -20.14 3.18 -665.12 -2.11 -22.25 16 20 C 0.10 2.54 10.77 127.77 1.38 3.92 16 21 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.08 1.10 7.92 -2.39 -0.02 1.08 16 23 H 0.10 1.27 7.07 -2.39 -0.02 1.25 16 24 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.11 2.11 7.07 -2.39 -0.02 2.09 16 26 H 0.05 1.67 7.17 -2.39 -0.02 1.66 16 27 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 4.67 6.07 -2.39 -0.01 4.66 16 29 H 0.02 1.14 7.00 -2.39 -0.02 1.12 16 30 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.07 2.01 7.73 -2.38 -0.02 1.99 16 32 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -78.37 275.07 5.70 -72.67 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: 1.10 Total: 3.92 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.17 Total: 13.62 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -3.52 Total: -101.42 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.07 Total: -37.35 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -78.37 5.70 -72.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261175514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.153 kcal (2) G-P(sol) polarization free energy of solvation -78.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds