Wall clock time and date at job start Mon Mar 30 2020 02:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32866 * 126.04556 * 2 1 4 4 C 1.50697 * 126.03907 * 0.02562 * 3 2 1 5 5 N 1.38692 * 107.91707 * 180.02562 * 3 2 1 6 6 C 1.46502 * 125.98567 * 180.02562 * 5 3 2 7 7 H 1.09001 * 109.46875 * 0.02562 * 6 5 3 8 8 C 1.53000 * 109.47104 * 119.99971 * 6 5 3 9 9 C 1.50694 * 109.47115 * 239.99849 * 6 5 3 10 10 H 1.07996 * 120.00373 * 354.36650 * 9 6 5 11 11 C 1.37881 * 119.99573 * 174.35967 * 9 6 5 12 12 N 1.31517 * 119.99771 * 156.95943 * 11 9 6 13 13 Si 1.86801 * 120.00458 * 336.68427 * 11 9 6 14 14 H 1.48492 * 109.47198 * 180.27733 * 13 11 9 15 15 H 1.48506 * 109.46756 * 300.27448 * 13 11 9 16 16 H 1.48500 * 109.47061 * 60.27268 * 13 11 9 17 17 C 1.34758 * 108.03285 * 0.26361 * 5 3 2 18 18 O 1.21799 * 125.94947 * 179.73734 * 17 5 3 19 19 N 1.34761 * 108.10542 * 359.57635 * 17 5 3 20 20 C 1.46498 * 125.98426 * 180.14228 * 19 17 5 21 21 H 1.08987 * 109.47580 * 89.99699 * 1 2 3 22 22 H 1.08998 * 109.47033 * 209.99726 * 1 2 3 23 23 H 1.08996 * 109.46658 * 329.99156 * 1 2 3 24 24 H 1.09000 * 109.46806 * 269.99417 * 4 3 2 25 25 H 1.08994 * 109.47499 * 29.99541 * 4 3 2 26 26 H 1.08999 * 109.47336 * 150.00081 * 4 3 2 27 27 H 1.09005 * 109.47293 * 293.28077 * 8 6 5 28 28 H 1.08998 * 109.47317 * 53.27659 * 8 6 5 29 29 H 1.09002 * 109.47427 * 173.27571 * 8 6 5 30 30 H 0.96999 * 119.99836 * 354.64963 * 12 11 9 31 31 H 1.08993 * 109.47323 * 270.32892 * 20 19 17 32 32 H 1.08996 * 109.47108 * 30.33151 * 20 19 17 33 33 H 1.09005 * 109.47088 * 150.33365 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2888 1.0743 0.0000 4 6 1.8252 2.5082 0.0005 5 7 3.6069 0.6427 -0.0006 6 6 4.7938 1.5015 -0.0003 7 1 4.4857 2.5471 0.0010 8 6 5.6300 1.2152 1.2486 9 6 5.6169 1.2212 -1.2310 10 1 5.3385 0.4165 -1.8952 11 6 6.7255 1.9924 -1.5092 12 7 7.6833 1.5154 -2.2740 13 14 6.8638 3.7175 -0.8061 14 1 8.1373 4.3347 -1.2557 15 1 5.7211 4.5385 -1.2810 16 1 6.8426 3.6506 0.6772 17 6 3.6046 -0.7048 -0.0068 18 8 4.5894 -1.4215 -0.0136 19 7 2.3231 -1.1215 -0.0007 20 6 1.8710 -2.5150 -0.0013 21 1 -0.3634 0.0001 -1.0275 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3632 0.8899 0.5140 24 1 1.7132 2.8541 -1.0270 25 1 0.8668 2.5801 0.5146 26 1 2.5605 3.1276 0.5142 27 1 5.0790 1.5299 2.1349 28 1 5.8374 0.1469 1.3100 29 1 6.5695 1.7649 1.1907 30 1 7.6475 0.5952 -2.5788 31 1 1.7588 -2.8601 -1.0291 32 1 2.6054 -3.1355 0.5121 33 1 0.9123 -2.5862 0.5125 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261175515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:04 Heat of formation + Delta-G solvation = 9.072297 kcal Electronic energy + Delta-G solvation = -16130.358658 eV Core-core repulsion = 13578.379902 eV Total energy + Delta-G solvation = -2551.978756 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.58518 -36.17080 -35.59078 -32.99229 -31.80607 -30.45398 -28.89269 -26.74137 -24.74732 -23.85678 -21.73019 -19.73725 -19.02431 -17.33298 -16.29823 -15.84111 -14.76384 -14.40208 -13.76737 -13.61293 -13.36703 -13.18986 -12.87456 -12.60427 -12.55844 -12.27499 -12.04854 -12.00018 -11.76253 -11.47432 -11.23633 -10.54500 -10.34917 -10.18764 -9.87577 -9.36469 -9.20073 -8.76002 -8.20109 -6.83299 -6.44939 -4.06795 2.68073 3.05263 3.34795 3.37414 3.55857 3.85228 4.17085 4.46057 5.07005 5.17542 5.25549 5.30205 5.51204 5.56089 5.62634 5.66486 5.77223 5.89319 5.98503 6.12003 6.24749 6.41750 6.48911 6.53241 6.68821 6.95768 7.22994 7.35914 7.73417 7.85559 8.34662 8.41407 8.92287 9.27569 9.59243 10.88205 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034149 B = 0.010129 C = 0.008677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.746623 B = 2763.555043 C = 3226.160719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.029 4.029 3 C 0.033 3.967 4 C -0.079 4.079 5 N -0.501 5.501 6 C 0.262 3.738 7 H 0.044 0.956 8 C -0.162 4.162 9 C -0.608 4.608 10 H 0.063 0.937 11 C 0.039 3.961 12 N -0.891 5.891 13 Si 1.031 2.969 14 H -0.280 1.280 15 H -0.280 1.280 16 H -0.275 1.275 17 C 0.652 3.348 18 O -0.566 6.566 19 N -0.543 5.543 20 C 0.107 3.893 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.024 0.976 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.272 0.728 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.536 0.343 6.158 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.133 4.133 3 C -0.075 4.075 4 C -0.137 4.137 5 N -0.217 5.217 6 C 0.162 3.838 7 H 0.061 0.939 8 C -0.221 4.221 9 C -0.645 4.645 10 H 0.081 0.919 11 C -0.168 4.168 12 N -0.523 5.523 13 Si 0.858 3.142 14 H -0.206 1.206 15 H -0.207 1.207 16 H -0.202 1.202 17 C 0.354 3.646 18 O -0.443 6.443 19 N -0.266 5.266 20 C -0.035 4.035 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.762 1.165 6.134 15.112 hybrid contribution -0.917 -1.546 -0.110 1.801 sum -14.679 -0.381 6.024 15.872 Atomic orbital electron populations 1.20101 0.87810 1.02513 1.02051 1.19605 0.93468 0.84707 1.15563 1.19979 0.83780 0.95643 1.08094 1.20249 1.00979 0.89609 1.02836 1.45860 1.06051 1.06115 1.63706 1.19202 0.80081 0.88281 0.96264 0.93876 1.22481 1.00178 1.03086 0.96306 1.22044 1.12880 1.20632 1.08980 0.91906 1.25654 0.91142 1.04010 0.95955 1.70791 1.29863 1.18021 1.33612 0.84239 0.76880 0.76370 0.76681 1.20568 1.20650 1.20151 1.16141 0.82783 0.82791 0.82855 1.90980 1.34626 1.58519 1.60214 1.45200 1.06481 1.05981 1.68904 1.21472 1.00255 0.79750 1.02049 0.91569 0.92061 0.90646 0.90757 0.90716 0.91185 0.95708 0.91874 0.91622 0.91747 0.92351 0.90393 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 9.91 36.00 0.36 -0.36 16 2 C -0.03 -0.47 6.91 -81.33 -0.56 -1.03 16 3 C 0.03 0.61 6.91 -81.34 -0.56 0.05 16 4 C -0.08 -1.10 9.74 36.00 0.35 -0.75 16 5 N -0.50 -11.76 2.64 -110.96 -0.29 -12.05 16 6 C 0.26 6.61 2.45 -69.08 -0.17 6.44 16 7 H 0.04 1.02 5.34 -51.93 -0.28 0.74 16 8 C -0.16 -3.92 9.04 37.16 0.34 -3.58 16 9 C -0.61 -18.03 8.47 -34.44 -0.29 -18.32 16 10 H 0.06 2.12 7.89 -52.49 -0.41 1.71 16 11 C 0.04 1.16 5.19 -17.82 -0.09 1.07 16 12 N -0.89 -28.01 13.70 55.43 0.76 -27.25 16 13 Si 1.03 24.55 26.45 -169.99 -4.50 20.06 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.03 6.16 56.52 0.35 -5.68 16 17 C 0.65 15.95 7.76 -86.95 -0.67 15.27 16 18 O -0.57 -16.08 16.23 5.10 0.08 -16.00 16 19 N -0.54 -10.35 3.18 -124.23 -0.39 -10.75 16 20 C 0.11 1.52 10.89 59.85 0.65 2.17 16 21 H 0.07 0.65 8.14 -51.94 -0.42 0.23 16 22 H 0.06 0.56 7.17 -51.93 -0.37 0.19 16 23 H 0.07 0.66 7.07 -51.93 -0.37 0.29 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.07 0.77 7.07 -51.93 -0.37 0.40 16 26 H 0.07 1.00 7.17 -51.93 -0.37 0.63 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 1.66 6.82 -51.93 -0.35 1.30 16 29 H 0.06 1.58 5.49 -51.93 -0.29 1.30 16 30 H 0.27 8.75 8.73 -40.82 -0.36 8.39 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 33 H 0.07 0.76 7.15 -51.93 -0.37 0.39 16 LS Contribution 270.37 15.07 4.07 4.07 Total: -1.00 -36.05 270.37 -5.42 -41.47 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.50 Total: -0.50 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -0.66 Total: 0.96 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.07 Total: -50.06 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.08 Total: -16.00 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -4.50 Total: 20.06 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -36.05 -5.42 -41.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261175515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.539 kcal (2) G-P(sol) polarization free energy of solvation -36.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds