Wall clock time and date at job start Mon Mar 30 2020 02:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32866 * 126.04556 * 2 1 4 4 C 1.50697 * 126.03907 * 0.02562 * 3 2 1 5 5 N 1.38692 * 107.91707 * 180.02562 * 3 2 1 6 6 C 1.46502 * 125.98567 * 180.02562 * 5 3 2 7 7 H 1.09001 * 109.46875 * 0.02562 * 6 5 3 8 8 C 1.53000 * 109.47104 * 119.99971 * 6 5 3 9 9 C 1.50694 * 109.47115 * 239.99849 * 6 5 3 10 10 H 1.07996 * 120.00373 * 354.36650 * 9 6 5 11 11 C 1.37881 * 119.99573 * 174.35967 * 9 6 5 12 12 N 1.31517 * 119.99771 * 156.95943 * 11 9 6 13 13 Si 1.86801 * 120.00458 * 336.68427 * 11 9 6 14 14 H 1.48492 * 109.47198 * 180.27733 * 13 11 9 15 15 H 1.48506 * 109.46756 * 300.27448 * 13 11 9 16 16 H 1.48500 * 109.47061 * 60.27268 * 13 11 9 17 17 C 1.34758 * 108.03285 * 0.26361 * 5 3 2 18 18 O 1.21799 * 125.94947 * 179.73734 * 17 5 3 19 19 N 1.34761 * 108.10542 * 359.57635 * 17 5 3 20 20 C 1.46498 * 125.98426 * 180.14228 * 19 17 5 21 21 H 1.08987 * 109.47580 * 89.99699 * 1 2 3 22 22 H 1.08998 * 109.47033 * 209.99726 * 1 2 3 23 23 H 1.08996 * 109.46658 * 329.99156 * 1 2 3 24 24 H 1.09000 * 109.46806 * 269.99417 * 4 3 2 25 25 H 1.08994 * 109.47499 * 29.99541 * 4 3 2 26 26 H 1.08999 * 109.47336 * 150.00081 * 4 3 2 27 27 H 1.09005 * 109.47293 * 293.28077 * 8 6 5 28 28 H 1.08998 * 109.47317 * 53.27659 * 8 6 5 29 29 H 1.09002 * 109.47427 * 173.27571 * 8 6 5 30 30 H 0.96999 * 119.99836 * 354.64963 * 12 11 9 31 31 H 1.08993 * 109.47323 * 270.32892 * 20 19 17 32 32 H 1.08996 * 109.47108 * 30.33151 * 20 19 17 33 33 H 1.09005 * 109.47088 * 150.33365 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2888 1.0743 0.0000 4 6 1.8252 2.5082 0.0005 5 7 3.6069 0.6427 -0.0006 6 6 4.7938 1.5015 -0.0003 7 1 4.4857 2.5471 0.0010 8 6 5.6300 1.2152 1.2486 9 6 5.6169 1.2212 -1.2310 10 1 5.3385 0.4165 -1.8952 11 6 6.7255 1.9924 -1.5092 12 7 7.6833 1.5154 -2.2740 13 14 6.8638 3.7175 -0.8061 14 1 8.1373 4.3347 -1.2557 15 1 5.7211 4.5385 -1.2810 16 1 6.8426 3.6506 0.6772 17 6 3.6046 -0.7048 -0.0068 18 8 4.5894 -1.4215 -0.0136 19 7 2.3231 -1.1215 -0.0007 20 6 1.8710 -2.5150 -0.0013 21 1 -0.3634 0.0001 -1.0275 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3632 0.8899 0.5140 24 1 1.7132 2.8541 -1.0270 25 1 0.8668 2.5801 0.5146 26 1 2.5605 3.1276 0.5142 27 1 5.0790 1.5299 2.1349 28 1 5.8374 0.1469 1.3100 29 1 6.5695 1.7649 1.1907 30 1 7.6475 0.5952 -2.5788 31 1 1.7588 -2.8601 -1.0291 32 1 2.6054 -3.1355 0.5121 33 1 0.9123 -2.5862 0.5125 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261175515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:03 Heat of formation + Delta-G solvation = -17.184021 kcal Electronic energy + Delta-G solvation = -16131.497218 eV Core-core repulsion = 13578.379902 eV Total energy + Delta-G solvation = -2553.117316 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.16539 -37.96426 -37.36729 -34.94454 -33.33300 -32.18819 -29.95416 -28.16199 -26.92858 -25.16713 -23.56630 -21.23894 -20.84141 -19.46304 -17.88769 -17.41852 -16.47660 -16.13162 -15.43543 -15.22981 -14.74053 -14.52096 -14.31058 -14.15056 -14.02023 -13.60520 -13.51983 -13.47191 -13.26187 -12.80757 -12.57524 -12.46588 -12.13677 -11.83737 -11.71976 -11.35001 -11.08733 -10.59460 -10.41318 -8.90679 -8.29018 -6.46084 1.37376 1.44411 1.50223 1.53375 1.73077 2.03113 2.47578 2.73384 2.91197 3.88486 4.16190 4.20837 4.29458 4.39521 4.41801 4.51907 4.58951 4.64148 4.67507 4.82981 4.87434 4.99013 5.12210 5.19066 5.25647 5.27838 5.49084 5.63133 5.79367 5.90645 6.18471 6.46719 6.75144 7.28172 7.52938 8.47327 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034149 B = 0.010129 C = 0.008677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.746623 B = 2763.555043 C = 3226.160719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.009 4.009 3 C -0.008 4.008 4 C -0.075 4.075 5 N -0.516 5.516 6 C 0.263 3.737 7 H 0.075 0.925 8 C -0.154 4.154 9 C -0.614 4.614 10 H -0.003 1.003 11 C -0.015 4.015 12 N -0.922 5.922 13 Si 1.080 2.920 14 H -0.283 1.283 15 H -0.245 1.245 16 H -0.239 1.239 17 C 0.619 3.381 18 O -0.631 6.631 19 N -0.540 5.540 20 C 0.098 3.902 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.105 0.895 24 H 0.076 0.924 25 H 0.119 0.881 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.026 0.974 29 H 0.064 0.936 30 H 0.247 0.753 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.195 2.735 7.984 20.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C -0.113 4.113 4 C -0.133 4.133 5 N -0.232 5.232 6 C 0.161 3.839 7 H 0.092 0.908 8 C -0.213 4.213 9 C -0.652 4.652 10 H 0.015 0.985 11 C -0.213 4.213 12 N -0.555 5.555 13 Si 0.897 3.103 14 H -0.209 1.209 15 H -0.168 1.168 16 H -0.163 1.163 17 C 0.321 3.679 18 O -0.514 6.514 19 N -0.260 5.260 20 C -0.043 4.043 21 H 0.100 0.900 22 H 0.102 0.898 23 H 0.124 0.876 24 H 0.095 0.905 25 H 0.137 0.863 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.538 3.540 7.963 19.584 hybrid contribution 0.106 -2.460 -0.736 2.570 sum -17.433 1.079 7.227 18.902 Atomic orbital electron populations 1.20366 0.82794 1.05169 1.03807 1.20689 0.96006 0.82854 1.11731 1.20918 0.81548 0.98701 1.10159 1.20419 1.02889 0.86317 1.03629 1.45787 1.07696 1.05830 1.63892 1.19016 0.80754 0.90080 0.94045 0.90790 1.22349 1.00569 1.00801 0.97549 1.22100 1.14317 1.18544 1.10238 0.98500 1.27550 0.90121 1.08445 0.95232 1.70961 1.31741 1.16662 1.36186 0.83704 0.78041 0.70364 0.78221 1.20911 1.16844 1.16254 1.16608 0.83983 0.83226 0.84076 1.90898 1.37192 1.60074 1.63256 1.45439 1.05100 1.08499 1.67006 1.21846 1.02005 0.77189 1.03253 0.90039 0.89817 0.87606 0.90488 0.86288 0.91490 0.91888 0.95446 0.91702 0.94416 0.91480 0.91779 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 9.91 71.23 0.71 -0.29 16 2 C -0.01 -0.26 6.91 40.29 0.28 0.02 16 3 C -0.01 -0.28 6.91 40.30 0.28 0.00 16 4 C -0.08 -1.78 9.74 71.24 0.69 -1.09 16 5 N -0.52 -24.36 2.64 -623.16 -1.65 -26.01 16 6 C 0.26 13.26 2.45 44.24 0.11 13.37 16 7 H 0.07 3.29 5.34 -2.39 -0.01 3.27 16 8 C -0.15 -7.43 9.04 71.98 0.65 -6.78 16 9 C -0.61 -38.22 8.47 25.60 0.22 -38.00 16 10 H 0.00 -0.26 7.89 -2.91 -0.02 -0.28 16 11 C -0.01 -0.89 5.19 84.66 0.44 -0.45 16 12 N -0.92 -61.01 13.70 21.45 0.29 -60.71 16 13 Si 1.08 48.23 26.45 68.60 1.81 50.05 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 15 H -0.24 -9.53 7.11 99.48 0.71 -8.82 16 16 H -0.24 -9.26 6.16 99.48 0.61 -8.65 16 17 C 0.62 31.43 7.76 179.07 1.39 32.82 16 18 O -0.63 -38.61 16.23 -4.67 -0.08 -38.69 16 19 N -0.54 -20.16 3.18 -665.13 -2.11 -22.28 16 20 C 0.10 2.63 10.89 127.77 1.39 4.02 16 21 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.08 0.99 7.17 -2.39 -0.02 0.97 16 23 H 0.11 1.10 7.07 -2.39 -0.02 1.08 16 24 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.12 1.70 7.07 -2.39 -0.02 1.69 16 26 H 0.07 1.63 7.17 -2.39 -0.02 1.61 16 27 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 28 H 0.03 1.47 6.82 -2.39 -0.02 1.46 16 29 H 0.06 3.06 5.49 -2.39 -0.01 3.05 16 30 H 0.25 17.19 8.73 -92.71 -0.81 16.39 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 33 H 0.12 2.05 7.15 -2.38 -0.02 2.04 16 Total: -1.00 -88.80 270.37 5.40 -83.41 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.97 Total: 10.61 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 6.15 Total: 3.62 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -3.47 Total: -109.00 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -0.08 Total: -38.69 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 1.81 Total: 50.05 kcal Total: -88.80 5.40 -83.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261175515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.225 kcal (2) G-P(sol) polarization free energy of solvation -88.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds