Wall clock time and date at job start Mon Mar 30 2020 02:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35679 * 117.00058 * 2 1 4 4 C 1.35911 * 126.28672 * 185.18980 * 3 2 1 5 5 C 1.39929 * 107.93002 * 180.26452 * 4 3 2 6 6 C 1.50706 * 125.73684 * 179.73142 * 5 4 3 7 7 C 1.53001 * 109.46801 * 124.97652 * 6 5 4 8 8 C 1.52996 * 109.47273 * 65.00246 * 7 6 5 9 9 C 1.53004 * 109.46890 * 185.00256 * 7 6 5 10 10 N 1.31017 * 108.53186 * 359.73826 * 5 4 3 11 11 N 1.36613 * 126.28443 * 5.00059 * 3 2 1 12 12 C 1.37378 * 126.13717 * 359.97438 * 11 3 2 13 13 H 1.07996 * 120.00037 * 324.18741 * 12 11 3 14 14 C 1.38928 * 119.99708 * 144.18585 * 12 11 3 15 15 N 1.31339 * 120.00180 * 350.12913 * 14 12 11 16 16 Si 1.86799 * 119.99897 * 170.40909 * 14 12 11 17 17 H 1.48500 * 109.47212 * 179.72933 * 16 14 12 18 18 H 1.48505 * 109.46716 * 299.72081 * 16 14 12 19 19 H 1.48495 * 109.47560 * 59.71987 * 16 14 12 20 20 H 1.09001 * 109.47225 * 304.43336 * 1 2 3 21 21 H 1.08997 * 109.47732 * 64.43972 * 1 2 3 22 22 H 1.09007 * 109.47059 * 184.44205 * 1 2 3 23 23 H 1.08004 * 126.03807 * 0.03871 * 4 3 2 24 24 H 1.08996 * 109.47369 * 244.97762 * 6 5 4 25 25 H 1.09003 * 109.46781 * 4.98200 * 6 5 4 26 26 H 1.09004 * 109.47017 * 305.00096 * 7 6 5 27 27 H 1.08997 * 109.47424 * 179.97438 * 8 7 6 28 28 H 1.09004 * 109.47185 * 300.00335 * 8 7 6 29 29 H 1.09001 * 109.47014 * 59.99503 * 8 7 6 30 30 H 1.09000 * 109.47066 * 60.00261 * 9 7 6 31 31 H 1.08997 * 109.46955 * 180.02562 * 9 7 6 32 32 H 1.09001 * 109.46878 * 300.00180 * 9 7 6 33 33 H 0.97000 * 120.00543 * 354.85777 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.3823 1.4303 -0.0991 5 6 3.5947 2.8126 -0.0531 6 6 4.9338 3.5002 -0.1252 7 6 4.9221 4.5209 -1.2650 8 6 3.9151 5.6282 -0.9478 9 6 6.3175 5.1293 -1.4190 10 7 2.4338 3.4086 0.0633 11 7 1.4346 2.4273 0.0960 12 6 0.0837 2.6500 0.2096 13 1 -0.6145 2.0114 -0.3110 14 6 -0.3841 3.6965 0.9945 15 7 0.4426 4.3501 1.7783 16 14 -2.1905 4.1691 0.9407 17 1 -2.4332 5.3035 1.8678 18 1 -2.5557 4.5725 -0.4411 19 1 -3.0187 3.0073 1.3523 20 1 -0.3634 0.5811 0.8476 21 1 -0.3634 0.4434 -0.9270 22 1 -0.3633 -1.0246 0.0796 23 1 4.1465 0.6728 -0.1928 24 1 5.1315 4.0105 0.8174 25 1 5.7128 2.7601 -0.3082 26 1 4.6372 4.0256 -2.1933 27 1 3.9071 6.3555 -1.7596 28 1 2.9210 5.1947 -0.8381 29 1 4.2000 6.1233 -0.0195 30 1 7.0349 4.3404 -1.6450 31 1 6.3091 5.8567 -2.2306 32 1 6.6024 5.6245 -0.4906 33 1 1.3627 4.0557 1.8661 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261175897.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:11 Heat of formation + Delta-G solvation = 25.115945 kcal Electronic energy + Delta-G solvation = -15866.018271 eV Core-core repulsion = 13314.735219 eV Total energy + Delta-G solvation = -2551.283052 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.12455 -37.24488 -35.66003 -33.61258 -30.40225 -28.69016 -27.30563 -26.53737 -25.88844 -23.86900 -20.38100 -19.98133 -18.74876 -18.51608 -15.72941 -15.24972 -14.72390 -14.39600 -14.18573 -14.01214 -13.56468 -13.27738 -13.03571 -12.35926 -12.14903 -11.84009 -11.56210 -11.24546 -11.16405 -10.74260 -10.54043 -10.42788 -10.34340 -10.24068 -10.08384 -9.91582 -9.16113 -8.95073 -7.93687 -7.09021 -6.81146 -4.41757 3.08148 3.17327 3.36612 3.43978 3.88041 3.91625 4.11814 4.51870 4.95734 5.40329 5.41544 5.48728 5.82737 5.86932 5.92769 6.01982 6.10359 6.17246 6.28336 6.32051 6.40036 6.49682 6.60959 6.73820 6.85573 6.95690 7.06301 7.23458 7.44793 7.75302 7.88539 8.32040 8.70461 9.34270 9.39868 10.45439 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024992 B = 0.010382 C = 0.007751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.096173 B = 2696.231068 C = 3611.591808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.197 3.803 4 C -0.314 4.314 5 C 0.029 3.971 6 C -0.019 4.019 7 C -0.088 4.088 8 C -0.154 4.154 9 C -0.144 4.144 10 N -0.301 5.301 11 N -0.199 5.199 12 C -0.434 4.434 13 H 0.108 0.892 14 C 0.028 3.972 15 N -0.828 5.828 16 Si 1.083 2.917 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.279 1.279 20 H 0.077 0.923 21 H 0.048 0.952 22 H 0.078 0.922 23 H 0.126 0.874 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.037 0.963 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 -1.622 -3.333 4.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.218 6.218 3 C 0.026 3.974 4 C -0.346 4.346 5 C -0.130 4.130 6 C -0.058 4.058 7 C -0.107 4.107 8 C -0.211 4.211 9 C -0.202 4.202 10 N -0.132 5.132 11 N 0.022 4.978 12 C -0.563 4.563 13 H 0.125 0.875 14 C -0.189 4.189 15 N -0.457 5.457 16 Si 0.906 3.094 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.205 1.205 20 H 0.096 0.904 21 H 0.066 0.934 22 H 0.097 0.903 23 H 0.144 0.856 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.281 0.315 -2.620 2.934 hybrid contribution 1.269 -1.906 -0.728 2.402 sum 2.549 -1.591 -3.349 4.499 Atomic orbital electron populations 1.23323 0.79059 1.01735 1.02582 1.85960 1.21115 1.23444 1.91258 1.19752 0.90694 0.79587 1.07380 1.19719 0.91600 0.95727 1.27517 1.21508 0.94534 0.91737 1.05194 1.19845 0.91213 0.96409 0.98368 1.21011 0.94871 0.96280 0.98518 1.22016 1.02156 0.97351 0.99615 1.21850 0.96830 1.00258 1.01219 1.77423 0.94988 1.12564 1.28258 1.45156 1.05672 1.00821 1.46121 1.20894 0.77766 1.22815 1.34801 0.87463 1.26672 1.07752 0.92640 0.91821 1.70421 1.09342 1.36459 1.29437 0.83329 0.71447 0.77255 0.77326 1.19721 1.20434 1.20492 0.90434 0.93374 0.90329 0.85586 0.91582 0.91404 0.91734 0.94401 0.88968 0.93554 0.93132 0.93189 0.92934 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.38 101.05 0.95 1.50 16 2 O -0.31 -7.19 10.56 -18.74 -0.20 -7.39 16 3 C 0.20 5.06 7.80 -16.26 -0.13 4.93 16 4 C -0.31 -7.52 10.74 -39.78 -0.43 -7.95 16 5 C 0.03 0.68 6.44 -82.30 -0.53 0.15 16 6 C -0.02 -0.36 5.27 -27.88 -0.15 -0.50 16 7 C -0.09 -1.50 2.91 -90.62 -0.26 -1.77 16 8 C -0.15 -2.92 8.92 37.16 0.33 -2.59 16 9 C -0.14 -1.94 9.19 37.16 0.34 -1.60 16 10 N -0.30 -8.03 7.75 33.71 0.26 -7.77 16 11 N -0.20 -5.43 3.37 -11.64 -0.04 -5.47 16 12 C -0.43 -11.57 7.81 -14.81 -0.12 -11.68 16 13 H 0.11 2.62 4.85 -52.49 -0.25 2.37 16 14 C 0.03 0.75 5.43 -17.51 -0.10 0.65 16 15 N -0.83 -23.91 13.42 55.49 0.74 -23.17 16 16 Si 1.08 22.34 29.93 -169.99 -5.09 17.26 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 20 H 0.08 1.62 6.25 -51.93 -0.32 1.30 16 21 H 0.05 0.92 6.81 -51.93 -0.35 0.57 16 22 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 23 H 0.13 2.68 8.06 -52.48 -0.42 2.25 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 2.13 5.50 -51.93 -0.29 1.85 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.30 8.98 6.57 -40.82 -0.27 8.71 16 LS Contribution 271.52 15.07 4.09 4.09 Total: -1.00 -30.48 271.52 -4.82 -35.30 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.51 Total: 6.01 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -0.08 Total: -18.86 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.97 Total: -36.41 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.20 Total: -7.39 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.09 Total: 17.26 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.48 -4.82 -35.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261175897.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.414 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds