Wall clock time and date at job start Mon Mar 30 2020 02:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35679 * 117.00058 * 2 1 4 4 C 1.35911 * 126.28672 * 185.18980 * 3 2 1 5 5 C 1.39929 * 107.93002 * 180.26452 * 4 3 2 6 6 C 1.50706 * 125.73684 * 179.73142 * 5 4 3 7 7 C 1.53001 * 109.46801 * 124.97652 * 6 5 4 8 8 C 1.52996 * 109.47273 * 65.00246 * 7 6 5 9 9 C 1.53004 * 109.46890 * 185.00256 * 7 6 5 10 10 N 1.31017 * 108.53186 * 359.73826 * 5 4 3 11 11 N 1.36613 * 126.28443 * 5.00059 * 3 2 1 12 12 C 1.37378 * 126.13717 * 359.97438 * 11 3 2 13 13 H 1.07996 * 120.00037 * 324.18741 * 12 11 3 14 14 C 1.38928 * 119.99708 * 144.18585 * 12 11 3 15 15 N 1.31339 * 120.00180 * 350.12913 * 14 12 11 16 16 Si 1.86799 * 119.99897 * 170.40909 * 14 12 11 17 17 H 1.48500 * 109.47212 * 179.72933 * 16 14 12 18 18 H 1.48505 * 109.46716 * 299.72081 * 16 14 12 19 19 H 1.48495 * 109.47560 * 59.71987 * 16 14 12 20 20 H 1.09001 * 109.47225 * 304.43336 * 1 2 3 21 21 H 1.08997 * 109.47732 * 64.43972 * 1 2 3 22 22 H 1.09007 * 109.47059 * 184.44205 * 1 2 3 23 23 H 1.08004 * 126.03807 * 0.03871 * 4 3 2 24 24 H 1.08996 * 109.47369 * 244.97762 * 6 5 4 25 25 H 1.09003 * 109.46781 * 4.98200 * 6 5 4 26 26 H 1.09004 * 109.47017 * 305.00096 * 7 6 5 27 27 H 1.08997 * 109.47424 * 179.97438 * 8 7 6 28 28 H 1.09004 * 109.47185 * 300.00335 * 8 7 6 29 29 H 1.09001 * 109.47014 * 59.99503 * 8 7 6 30 30 H 1.09000 * 109.47066 * 60.00261 * 9 7 6 31 31 H 1.08997 * 109.46955 * 180.02562 * 9 7 6 32 32 H 1.09001 * 109.46878 * 300.00180 * 9 7 6 33 33 H 0.97000 * 120.00543 * 354.85777 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.3823 1.4303 -0.0991 5 6 3.5947 2.8126 -0.0531 6 6 4.9338 3.5002 -0.1252 7 6 4.9221 4.5209 -1.2650 8 6 3.9151 5.6282 -0.9478 9 6 6.3175 5.1293 -1.4190 10 7 2.4338 3.4086 0.0633 11 7 1.4346 2.4273 0.0960 12 6 0.0837 2.6500 0.2096 13 1 -0.6145 2.0114 -0.3110 14 6 -0.3841 3.6965 0.9945 15 7 0.4426 4.3501 1.7783 16 14 -2.1905 4.1691 0.9407 17 1 -2.4332 5.3035 1.8678 18 1 -2.5557 4.5725 -0.4411 19 1 -3.0187 3.0073 1.3523 20 1 -0.3634 0.5811 0.8476 21 1 -0.3634 0.4434 -0.9270 22 1 -0.3633 -1.0246 0.0796 23 1 4.1465 0.6728 -0.1928 24 1 5.1315 4.0105 0.8174 25 1 5.7128 2.7601 -0.3082 26 1 4.6372 4.0256 -2.1933 27 1 3.9071 6.3555 -1.7596 28 1 2.9210 5.1947 -0.8381 29 1 4.2000 6.1233 -0.0195 30 1 7.0349 4.3404 -1.6450 31 1 6.3091 5.8567 -2.2306 32 1 6.6024 5.6245 -0.4906 33 1 1.3627 4.0557 1.8661 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261175897.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:10 Heat of formation + Delta-G solvation = 5.844318 kcal Electronic energy + Delta-G solvation = -15866.853951 eV Core-core repulsion = 13314.735219 eV Total energy + Delta-G solvation = -2552.118732 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.01570 -39.00241 -37.17722 -35.52099 -32.27255 -30.49193 -29.04883 -27.85394 -27.53509 -25.78459 -22.20714 -21.60550 -20.57191 -20.27772 -17.59744 -17.07818 -16.46505 -16.07378 -15.75079 -15.69370 -15.27688 -14.85458 -14.55105 -14.10372 -13.85320 -13.10469 -13.05966 -12.87330 -12.68005 -12.40028 -12.15168 -12.00539 -11.91813 -11.87278 -11.57584 -11.54902 -11.02266 -10.78012 -9.91123 -9.03908 -8.83865 -6.48385 1.28927 1.48913 1.68049 1.76871 2.06914 2.09512 2.39194 2.72795 2.97722 3.94175 4.07186 4.08522 4.30998 4.35300 4.42399 4.69933 4.72665 4.74420 4.83899 4.88593 5.01087 5.03921 5.10067 5.16492 5.22764 5.29580 5.52628 5.57618 5.61729 5.85422 5.91398 6.40974 6.73347 7.41627 7.42681 8.35926 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024992 B = 0.010382 C = 0.007751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.096173 B = 2696.231068 C = 3611.591808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.183 3.817 4 C -0.326 4.326 5 C 0.031 3.969 6 C -0.019 4.019 7 C -0.083 4.083 8 C -0.151 4.151 9 C -0.135 4.135 10 N -0.331 5.331 11 N -0.229 5.229 12 C -0.451 4.451 13 H 0.123 0.877 14 C -0.016 4.016 15 N -0.865 5.865 16 Si 1.132 2.868 17 H -0.279 1.279 18 H -0.265 1.265 19 H -0.248 1.248 20 H 0.058 0.942 21 H 0.047 0.953 22 H 0.127 0.873 23 H 0.153 0.847 24 H 0.069 0.931 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.399 -2.250 -4.155 5.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.012 3.988 4 C -0.357 4.357 5 C -0.129 4.129 6 C -0.058 4.058 7 C -0.102 4.102 8 C -0.209 4.209 9 C -0.192 4.192 10 N -0.161 5.161 11 N -0.009 5.009 12 C -0.579 4.579 13 H 0.140 0.860 14 C -0.225 4.225 15 N -0.495 5.495 16 Si 0.948 3.052 17 H -0.205 1.205 18 H -0.190 1.190 19 H -0.172 1.172 20 H 0.077 0.923 21 H 0.066 0.934 22 H 0.145 0.855 23 H 0.171 0.829 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.727 -0.344 -3.454 3.877 hybrid contribution 1.212 -1.809 -0.518 2.238 sum 2.939 -2.152 -3.973 5.390 Atomic orbital electron populations 1.23490 0.77164 1.04491 1.01673 1.85961 1.23031 1.22256 1.91066 1.20279 0.91665 0.80099 1.06803 1.20213 0.91753 0.96603 1.27109 1.22387 0.95635 0.92071 1.02786 1.20069 0.89208 0.97338 0.99203 1.20968 0.96732 0.95227 0.97251 1.21950 1.00342 0.98269 1.00311 1.21766 0.94302 1.01008 1.02148 1.77450 0.96035 1.13537 1.29122 1.45415 1.06135 1.01463 1.47883 1.21364 0.78330 1.23324 1.34843 0.85962 1.28361 1.11326 0.92257 0.90513 1.70548 1.08624 1.38173 1.32125 0.82780 0.66724 0.77821 0.77841 1.20451 1.19004 1.17157 0.92337 0.93447 0.85525 0.82918 0.91277 0.88341 0.92717 0.92701 0.93391 0.93658 0.91140 0.91978 0.92231 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 9.38 113.37 1.06 2.05 16 2 O -0.32 -14.42 10.56 -89.97 -0.95 -15.37 16 3 C 0.18 9.44 7.80 83.41 0.65 10.09 16 4 C -0.33 -15.43 10.74 22.14 0.24 -15.20 16 5 C 0.03 1.46 6.44 43.09 0.28 1.74 16 6 C -0.02 -0.69 5.27 29.85 0.16 -0.53 16 7 C -0.08 -2.70 2.91 -10.79 -0.03 -2.74 16 8 C -0.15 -5.73 8.92 71.98 0.64 -5.09 16 9 C -0.14 -3.20 9.19 71.98 0.66 -2.54 16 10 N -0.33 -18.15 7.75 -47.26 -0.37 -18.51 16 11 N -0.23 -12.81 3.37 -301.30 -1.01 -13.82 16 12 C -0.45 -24.46 7.81 83.99 0.66 -23.81 16 13 H 0.12 6.00 4.85 -2.91 -0.01 5.98 16 14 C -0.02 -0.85 5.43 84.93 0.46 -0.39 16 15 N -0.87 -51.79 13.42 21.65 0.29 -51.50 16 16 Si 1.13 44.88 29.93 68.60 2.05 46.93 16 17 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 19 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 20 H 0.06 2.43 6.25 -2.39 -0.01 2.41 16 21 H 0.05 1.77 6.81 -2.39 -0.02 1.76 16 22 H 0.13 3.50 8.14 -2.38 -0.02 3.48 16 23 H 0.15 6.21 8.06 -2.91 -0.02 6.18 16 24 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.10 2.88 8.12 -2.39 -0.02 2.86 16 26 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 2.28 5.50 -2.38 -0.01 2.27 16 29 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.28 17.51 6.57 -92.71 -0.61 16.90 16 Total: -1.00 -68.60 271.52 6.04 -62.56 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 1.26 Total: 26.11 kcal Atomic # 6 Polarization: -41.17 SS G_CDS: 4.78 Total: -36.40 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -1.09 Total: -83.84 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.95 Total: -15.37 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.05 Total: 46.93 kcal Total: -68.60 6.04 -62.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261175897.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.405 kcal (2) G-P(sol) polarization free energy of solvation -68.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds