Wall clock time and date at job start Mon Mar 30 2020 02:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47368 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00470 * 2 1 3 5 5 N 1.46505 * 109.47212 * 174.99693 * 4 2 1 6 6 C 1.38691 * 125.98313 * 269.69100 * 5 4 2 7 7 C 1.32868 * 107.91091 * 179.82812 * 6 5 4 8 8 N 1.38697 * 107.91455 * 0.42956 * 7 6 5 9 9 C 1.46498 * 125.98176 * 179.76456 * 8 7 6 10 10 C 1.50702 * 109.47170 * 269.95886 * 9 8 7 11 11 H 1.08003 * 119.99764 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00279 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99967 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00046 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47213 * 89.99564 * 14 12 10 16 16 H 1.48497 * 109.47198 * 209.99736 * 14 12 10 17 17 H 1.48502 * 109.46990 * 329.99861 * 14 12 10 18 18 C 1.34755 * 108.03127 * 359.72824 * 8 7 6 19 19 O 1.21802 * 125.94308 * 180.02562 * 18 8 7 20 20 H 1.09008 * 109.46970 * 299.99579 * 1 2 3 21 21 H 1.08996 * 109.47654 * 59.99341 * 1 2 3 22 22 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46970 * 240.00421 * 2 1 3 24 24 H 1.08996 * 109.47271 * 300.00893 * 3 2 1 25 25 H 1.09008 * 109.46731 * 60.00275 * 3 2 1 26 26 H 1.08998 * 109.47430 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 28 28 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 29 29 H 1.07999 * 126.04488 * 359.97438 * 6 5 4 30 30 H 1.08001 * 126.03980 * 180.16133 * 7 6 5 31 31 H 1.09000 * 109.47104 * 29.95724 * 9 8 7 32 32 H 1.08999 * 109.47471 * 149.96079 * 9 8 7 33 33 H 0.97007 * 119.99970 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.2199 -1.8723 0.6322 7 6 5.5127 -1.5986 0.7712 8 7 5.6229 -0.3816 1.4273 9 6 6.8731 0.2917 1.7878 10 6 7.3039 -0.1512 3.1624 11 1 6.7064 -0.8633 3.7122 12 6 8.4607 0.3527 3.7180 13 7 8.8363 -0.0334 4.9178 14 14 9.4937 1.5850 2.7673 15 1 9.0369 2.9621 3.0834 16 1 10.9203 1.4362 3.1519 17 1 9.3452 1.3362 1.3109 18 6 4.3788 0.0733 1.6744 19 8 4.0975 1.1164 2.2369 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6054 -1.7199 1.2950 28 1 1.7517 -0.1584 2.1369 29 1 3.8034 -2.7524 0.1649 30 1 6.3326 -2.2168 0.4366 31 1 7.6463 0.0340 1.0641 32 1 6.7184 1.3706 1.7856 33 1 9.6501 0.3215 5.3089 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261192807.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:36 Heat of formation + Delta-G solvation = 7.449714 kcal Electronic energy + Delta-G solvation = -15603.385470 eV Core-core repulsion = 13051.336353 eV Total energy + Delta-G solvation = -2552.049117 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.52170 -36.63144 -35.89367 -33.94662 -32.32783 -29.55755 -27.42335 -27.07780 -25.99114 -22.68645 -21.32597 -20.11904 -19.50077 -17.05874 -16.90413 -15.54746 -15.31851 -14.63357 -14.31014 -14.18429 -13.83647 -13.48232 -13.01027 -12.47110 -12.44234 -12.19265 -11.99558 -11.79277 -11.50549 -11.32627 -10.90619 -10.71429 -10.68988 -10.62604 -10.24586 -9.66623 -9.41764 -8.83578 -8.67036 -6.95762 -6.15872 -4.17134 2.84890 3.01322 3.24935 3.30554 3.32695 3.76459 4.28682 4.32663 4.78954 4.88884 5.04241 5.14706 5.34045 5.49387 5.58862 5.65333 5.80824 5.85547 5.92214 5.95000 6.07402 6.15393 6.28617 6.35376 6.51736 6.65634 6.97861 7.20916 7.44987 7.63294 8.24001 8.38741 8.87487 9.18031 9.42165 10.97165 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.047948 B = 0.006879 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.822806 B = 4069.417611 C = 4229.323002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.142 4.142 4 C 0.140 3.860 5 N -0.538 5.538 6 C -0.053 4.053 7 C 0.016 3.984 8 N -0.510 5.510 9 C 0.230 3.770 10 C -0.538 4.538 11 H 0.078 0.922 12 C 0.076 3.924 13 N -0.892 5.892 14 Si 0.876 3.124 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.265 1.265 18 C 0.646 3.354 19 O -0.576 6.576 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.169 0.831 30 H 0.172 0.828 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.985 -3.484 -12.158 17.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 C -0.200 4.200 4 C 0.017 3.983 5 N -0.259 5.259 6 C -0.176 4.176 7 C -0.110 4.110 8 N -0.225 5.225 9 C 0.110 3.890 10 C -0.576 4.576 11 H 0.096 0.904 12 C -0.127 4.127 13 N -0.529 5.529 14 Si 0.702 3.298 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.189 1.189 18 C 0.349 3.651 19 O -0.455 6.455 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.091 0.909 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.187 0.813 30 H 0.189 0.811 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.001 -2.645 -11.566 16.876 hybrid contribution 0.714 0.415 -0.318 0.885 sum -11.287 -2.230 -11.884 16.541 Atomic orbital electron populations 1.21770 0.94571 1.01650 1.02138 1.21537 0.95720 0.97562 0.98331 1.21795 1.01987 0.94946 1.01251 1.21491 0.76704 1.01134 0.98965 1.45279 1.06179 1.20064 1.54423 1.21451 0.90236 0.96298 1.09662 1.21764 0.96853 0.90366 1.02067 1.45656 1.07440 1.19082 1.50365 1.19787 0.78501 0.93329 0.97337 1.21258 1.08957 1.27786 0.99572 0.90422 1.24824 0.97059 0.96041 0.94801 1.69890 1.24242 1.43695 1.15115 0.86855 0.79876 0.82359 0.80673 1.19715 1.20751 1.18930 1.16249 0.81005 0.84747 0.83141 1.90970 1.80644 1.24039 1.49849 0.92390 0.92435 0.92638 0.90946 0.93367 0.92285 0.92289 0.90045 0.89649 0.81324 0.81053 0.93979 0.94122 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.19 37.15 0.34 -0.95 16 2 C -0.11 -1.32 3.13 -90.62 -0.28 -1.60 16 3 C -0.14 -2.03 8.50 37.16 0.32 -1.72 16 4 C 0.14 1.89 5.47 -4.04 -0.02 1.87 16 5 N -0.54 -9.36 2.61 -121.40 -0.32 -9.68 16 6 C -0.05 -0.79 11.49 -16.30 -0.19 -0.98 16 7 C 0.02 0.28 11.49 -16.29 -0.19 0.09 16 8 N -0.51 -11.44 2.76 -122.70 -0.34 -11.78 16 9 C 0.23 5.74 4.86 -5.19 -0.03 5.71 16 10 C -0.54 -15.67 9.94 -34.44 -0.34 -16.01 16 11 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 12 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 13 N -0.89 -27.44 13.96 55.43 0.77 -26.67 16 14 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 18 C 0.65 14.66 7.12 -86.95 -0.62 14.04 16 19 O -0.58 -15.08 16.69 5.10 0.09 -15.00 16 20 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 21 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.83 8.14 -51.92 -0.42 0.40 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 26 H 0.06 1.04 6.17 -51.93 -0.32 0.72 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 29 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.17 2.43 8.06 -52.49 -0.42 2.00 16 31 H 0.04 0.97 7.20 -51.93 -0.37 0.59 16 32 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16 33 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 279.31 15.07 4.21 4.21 Total: -1.00 -34.50 279.31 -6.26 -40.76 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.90 Total: -0.94 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -1.11 Total: 2.56 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.12 Total: -48.13 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.09 Total: -15.00 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -34.50 -6.26 -40.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261192807.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.214 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds