Wall clock time and date at job start Mon Mar 30 2020 02:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47368 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00470 * 2 1 3 5 5 N 1.46505 * 109.47212 * 174.99693 * 4 2 1 6 6 C 1.38691 * 125.98313 * 269.69100 * 5 4 2 7 7 C 1.32868 * 107.91091 * 179.82812 * 6 5 4 8 8 N 1.38697 * 107.91455 * 0.42956 * 7 6 5 9 9 C 1.46498 * 125.98176 * 179.76456 * 8 7 6 10 10 C 1.50702 * 109.47170 * 269.95886 * 9 8 7 11 11 H 1.08003 * 119.99764 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00279 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99967 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00046 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47213 * 89.99564 * 14 12 10 16 16 H 1.48497 * 109.47198 * 209.99736 * 14 12 10 17 17 H 1.48502 * 109.46990 * 329.99861 * 14 12 10 18 18 C 1.34755 * 108.03127 * 359.72824 * 8 7 6 19 19 O 1.21802 * 125.94308 * 180.02562 * 18 8 7 20 20 H 1.09008 * 109.46970 * 299.99579 * 1 2 3 21 21 H 1.08996 * 109.47654 * 59.99341 * 1 2 3 22 22 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46970 * 240.00421 * 2 1 3 24 24 H 1.08996 * 109.47271 * 300.00893 * 3 2 1 25 25 H 1.09008 * 109.46731 * 60.00275 * 3 2 1 26 26 H 1.08998 * 109.47430 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 28 28 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 29 29 H 1.07999 * 126.04488 * 359.97438 * 6 5 4 30 30 H 1.08001 * 126.03980 * 180.16133 * 7 6 5 31 31 H 1.09000 * 109.47104 * 29.95724 * 9 8 7 32 32 H 1.08999 * 109.47471 * 149.96079 * 9 8 7 33 33 H 0.97007 * 119.99970 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.2199 -1.8723 0.6322 7 6 5.5127 -1.5986 0.7712 8 7 5.6229 -0.3816 1.4273 9 6 6.8731 0.2917 1.7878 10 6 7.3039 -0.1512 3.1624 11 1 6.7064 -0.8633 3.7122 12 6 8.4607 0.3527 3.7180 13 7 8.8363 -0.0334 4.9178 14 14 9.4937 1.5850 2.7673 15 1 9.0369 2.9621 3.0834 16 1 10.9203 1.4362 3.1519 17 1 9.3452 1.3362 1.3109 18 6 4.3788 0.0733 1.6744 19 8 4.0975 1.1164 2.2369 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6054 -1.7199 1.2950 28 1 1.7517 -0.1584 2.1369 29 1 3.8034 -2.7524 0.1649 30 1 6.3326 -2.2168 0.4366 31 1 7.6463 0.0340 1.0641 32 1 6.7184 1.3706 1.7856 33 1 9.6501 0.3215 5.3089 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261192807.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:36 Heat of formation + Delta-G solvation = -15.616098 kcal Electronic energy + Delta-G solvation = -15604.385679 eV Core-core repulsion = 13051.336353 eV Total energy + Delta-G solvation = -2553.049325 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.02836 -37.82899 -37.62123 -35.65847 -34.23973 -31.18605 -29.10648 -28.09484 -27.28189 -24.60199 -22.66670 -21.47943 -20.87910 -19.24565 -18.37465 -17.10217 -16.82949 -16.14654 -16.00693 -15.50088 -15.24317 -14.80392 -14.57887 -14.23511 -13.78677 -13.54316 -13.29938 -13.13169 -12.90160 -12.80021 -12.57497 -12.36652 -11.90404 -11.84015 -11.74550 -11.64615 -11.18701 -10.89705 -10.45504 -8.47320 -8.40051 -6.49411 1.31267 1.36277 1.44370 1.53795 1.60923 2.07408 2.26815 2.87962 2.93185 3.77069 3.90857 4.07768 4.26358 4.49428 4.55149 4.57865 4.60418 4.67881 4.74765 4.80136 4.87687 4.95894 5.05292 5.17637 5.29435 5.35764 5.42237 5.44542 5.67842 6.03801 6.26703 6.51875 6.76051 7.13080 7.52902 8.76665 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.047948 B = 0.006879 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.822806 B = 4069.417611 C = 4229.323002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C -0.141 4.141 4 C 0.129 3.871 5 N -0.530 5.530 6 C -0.016 4.016 7 C -0.024 4.024 8 N -0.528 5.528 9 C 0.240 3.760 10 C -0.550 4.550 11 H 0.024 0.976 12 C 0.016 3.984 13 N -0.941 5.941 14 Si 0.952 3.048 15 H -0.274 1.274 16 H -0.269 1.269 17 H -0.233 1.233 18 C 0.619 3.381 19 O -0.631 6.631 20 H 0.051 0.949 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.068 0.932 25 H 0.038 0.962 26 H 0.019 0.981 27 H 0.126 0.874 28 H 0.062 0.938 29 H 0.230 0.770 30 H 0.201 0.799 31 H 0.070 0.930 32 H 0.024 0.976 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.813 -4.739 -15.066 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 C -0.198 4.198 4 C 0.008 3.992 5 N -0.250 5.250 6 C -0.138 4.138 7 C -0.147 4.147 8 N -0.244 5.244 9 C 0.119 3.881 10 C -0.588 4.588 11 H 0.043 0.957 12 C -0.183 4.183 13 N -0.579 5.579 14 Si 0.773 3.227 15 H -0.200 1.200 16 H -0.194 1.194 17 H -0.156 1.156 18 C 0.322 3.678 19 O -0.514 6.514 20 H 0.070 0.930 21 H 0.087 0.913 22 H 0.098 0.902 23 H 0.106 0.894 24 H 0.087 0.913 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.144 0.856 28 H 0.081 0.919 29 H 0.247 0.753 30 H 0.218 0.782 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.874 -3.975 -14.521 19.809 hybrid contribution 0.843 0.715 0.639 1.277 sum -12.031 -3.260 -13.882 18.657 Atomic orbital electron populations 1.21729 0.91933 1.03345 1.02453 1.21499 0.97710 0.95250 0.97738 1.21770 0.99379 0.97388 1.01269 1.21913 0.74492 1.03614 0.99148 1.45486 1.07307 1.19295 1.52885 1.22407 0.89079 0.96059 1.06278 1.22447 0.99275 0.89443 1.03556 1.45602 1.06577 1.20965 1.51236 1.19472 0.80502 0.92640 0.95500 1.21416 1.08762 1.27108 1.01539 0.95721 1.25871 0.98439 0.98134 0.95817 1.70042 1.25227 1.45441 1.17238 0.85660 0.77848 0.78467 0.80675 1.19986 1.19415 1.15628 1.16630 0.81972 0.85258 0.83945 1.90894 1.81623 1.26509 1.52410 0.92986 0.91311 0.90226 0.89441 0.91334 0.94255 0.96180 0.85637 0.91937 0.75348 0.78232 0.91190 0.95746 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.19 71.98 0.66 -1.33 16 2 C -0.10 -2.16 3.13 -10.80 -0.03 -2.19 16 3 C -0.14 -4.00 8.50 71.98 0.61 -3.38 16 4 C 0.13 3.22 5.47 86.38 0.47 3.70 16 5 N -0.53 -17.72 2.61 -656.19 -1.71 -19.43 16 6 C -0.02 -0.42 11.49 82.43 0.95 0.52 16 7 C -0.02 -0.79 11.49 82.43 0.95 0.16 16 8 N -0.53 -23.96 2.76 -660.29 -1.82 -25.78 16 9 C 0.24 12.13 4.86 85.63 0.42 12.55 16 10 C -0.55 -33.33 9.94 25.60 0.25 -33.08 16 11 H 0.02 1.69 8.06 -2.91 -0.02 1.67 16 12 C 0.02 0.97 5.47 84.65 0.46 1.44 16 13 N -0.94 -59.75 13.96 21.45 0.30 -59.45 16 14 Si 0.95 43.86 27.47 68.60 1.88 45.75 16 15 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 17 H -0.23 -9.51 6.54 99.48 0.65 -8.86 16 18 C 0.62 28.87 7.12 179.07 1.27 30.15 16 19 O -0.63 -34.99 16.69 -4.67 -0.08 -35.07 16 20 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 21 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.02 0.70 6.17 -2.39 -0.01 0.69 16 27 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.06 1.87 8.07 -2.39 -0.02 1.85 16 29 H 0.23 3.14 8.06 -2.91 -0.02 3.11 16 30 H 0.20 5.13 8.06 -2.91 -0.02 5.10 16 31 H 0.07 3.12 7.20 -2.39 -0.02 3.10 16 32 H 0.02 1.30 7.50 -2.39 -0.02 1.28 16 33 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 Total: -1.00 -82.14 279.31 5.61 -76.54 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 1.02 Total: 8.92 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 6.01 Total: 8.53 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -3.23 Total: -104.66 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.08 Total: -35.07 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.75 kcal Total: -82.14 5.61 -76.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261192807.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.921 kcal (2) G-P(sol) polarization free energy of solvation -82.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds