Wall clock time and date at job start Mon Mar 30 2020 02:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34729 * 126.10415 * 2 1 4 4 C 1.31052 * 108.60317 * 180.16525 * 3 2 1 5 5 N 1.38161 * 125.70911 * 179.83182 * 4 3 2 6 6 C 1.46499 * 120.00122 * 359.70399 * 5 4 3 7 7 C 1.46499 * 119.99653 * 179.69786 * 5 4 3 8 8 O 1.34210 * 108.57870 * 359.57720 * 4 3 2 9 9 C 1.34091 * 126.10532 * 179.69514 * 2 1 3 10 10 C 1.50702 * 126.35946 * 359.96807 * 9 2 1 11 11 C 1.52998 * 109.46998 * 90.01518 * 10 9 2 12 12 C 1.50701 * 109.47055 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00338 * 359.97438 * 12 11 10 14 14 C 1.37885 * 120.00034 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99951 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99762 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47493 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46973 * 120.00336 * 16 14 12 19 19 H 1.48497 * 109.47282 * 239.99617 * 16 14 12 20 20 H 1.09004 * 109.46826 * 270.29678 * 1 2 3 21 21 H 1.08997 * 109.47224 * 30.29981 * 1 2 3 22 22 H 1.09000 * 109.47122 * 150.30612 * 1 2 3 23 23 H 1.09002 * 109.47391 * 89.99392 * 6 5 4 24 24 H 1.09001 * 109.46813 * 329.99449 * 6 5 4 25 25 H 1.09004 * 109.47041 * 209.99576 * 6 5 4 26 26 H 1.09002 * 109.46782 * 180.02562 * 7 5 4 27 27 H 1.09008 * 109.47182 * 300.00089 * 7 5 4 28 28 H 1.08994 * 109.47256 * 60.00365 * 7 5 4 29 29 H 1.08998 * 109.47539 * 210.01083 * 10 9 2 30 30 H 1.08996 * 109.47420 * 330.01410 * 10 9 2 31 31 H 1.09006 * 109.47122 * 299.99449 * 11 10 9 32 32 H 1.08995 * 109.47721 * 60.00176 * 11 10 9 33 33 H 0.96995 * 119.99676 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3009 1.0885 0.0000 4 6 3.5507 0.6944 -0.0036 5 7 4.6572 1.5219 -0.0080 6 6 4.4840 2.9766 -0.0156 7 6 6.0036 0.9445 -0.0050 8 8 3.5760 -0.6474 0.0035 9 6 2.2971 -1.0833 0.0058 10 6 1.8431 -2.5203 0.0141 11 6 1.6892 -3.0148 -1.4256 12 6 1.2345 -4.4516 -1.4173 13 1 1.0720 -4.9612 -0.4790 14 6 1.0259 -5.1156 -2.6076 15 7 1.2233 -4.4950 -3.7501 16 14 0.4631 -6.8968 -2.5972 17 1 0.3143 -7.3608 -1.1944 18 1 -0.8427 -7.0073 -3.2958 19 1 1.4695 -7.7380 -3.2933 20 1 -0.3633 0.0053 1.0277 21 1 -0.3633 0.8873 -0.5185 22 1 -0.3633 -0.8927 -0.5091 23 1 4.4410 3.3428 1.0101 24 1 3.5573 3.2294 -0.5308 25 1 5.3248 3.4399 -0.5320 26 1 6.7425 1.7458 -0.0089 27 1 6.1350 0.3337 0.8882 28 1 6.1350 0.3244 -0.8917 29 1 2.5823 -3.1320 0.5312 30 1 0.8851 -2.5957 0.5285 31 1 0.9498 -2.4032 -1.9428 32 1 2.6471 -2.9395 -1.9401 33 1 1.0762 -4.9620 -4.5874 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261217079.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:00 Heat of formation + Delta-G solvation = -2.651332 kcal Electronic energy + Delta-G solvation = -15179.455244 eV Core-core repulsion = 12626.968113 eV Total energy + Delta-G solvation = -2552.487131 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.08850 -37.97019 -36.29060 -35.76732 -33.83031 -31.24233 -29.16826 -28.53659 -27.27199 -25.15536 -22.95925 -22.33190 -21.20643 -18.67488 -18.30936 -17.82770 -16.70627 -16.49436 -15.86654 -15.55385 -15.14727 -14.65078 -14.22313 -14.07205 -13.81036 -13.54116 -13.43451 -13.29346 -12.92514 -12.87155 -12.81083 -12.49722 -12.04273 -11.98133 -11.77155 -11.40725 -11.14467 -10.57939 -10.48013 -8.48930 -8.19099 -6.33098 0.71998 1.08979 1.42984 1.43165 1.57094 1.82192 2.37782 2.45291 3.13439 3.70587 4.00075 4.11135 4.27688 4.36892 4.42999 4.55666 4.69575 4.70733 4.79333 4.79940 4.85236 4.90371 4.94333 5.05418 5.16408 5.40412 5.48964 5.64209 5.79828 5.82285 6.13224 6.17476 6.83351 6.98700 7.36936 8.92207 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.041650 B = 0.005876 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.100381 B = 4763.896732 C = 5100.324346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.003 4.003 3 N -0.553 5.553 4 C 0.431 3.569 5 N -0.586 5.586 6 C 0.112 3.888 7 C 0.094 3.906 8 O -0.238 6.238 9 C -0.084 4.084 10 C -0.008 4.008 11 C 0.036 3.964 12 C -0.540 4.540 13 H 0.071 0.929 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.971 3.029 17 H -0.257 1.257 18 H -0.278 1.278 19 H -0.281 1.281 20 H 0.092 0.908 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.110 0.890 26 H 0.127 0.873 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.103 0.897 31 H -0.003 1.003 32 H -0.021 1.021 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.178 12.038 8.749 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 N -0.295 5.295 4 C 0.133 3.867 5 N -0.316 5.316 6 C -0.028 4.028 7 C -0.048 4.048 8 O -0.127 6.127 9 C -0.137 4.137 10 C -0.046 4.046 11 C -0.001 4.001 12 C -0.578 4.578 13 H 0.089 0.911 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.795 3.205 17 H -0.180 1.180 18 H -0.203 1.203 19 H -0.207 1.207 20 H 0.110 0.890 21 H 0.097 0.903 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.128 0.872 26 H 0.145 0.855 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.015 0.985 32 H -0.003 1.003 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.120 12.665 8.583 16.478 hybrid contribution 0.192 -1.557 -0.550 1.662 sum 6.312 11.108 8.034 15.092 Atomic orbital electron populations 1.20138 0.84934 1.03349 1.03659 1.21643 0.98787 0.87046 1.04626 1.70605 0.98389 1.30446 1.30011 1.22051 0.89498 0.78086 0.97051 1.45515 1.00663 1.04765 1.80657 1.21864 1.04001 0.74156 1.02777 1.21930 0.80532 1.00861 1.01499 1.84310 1.31928 1.22333 1.74124 1.23369 0.78988 0.98800 1.12518 1.20060 1.00927 0.84334 0.99253 1.18939 0.94612 0.95438 0.91089 1.21665 1.45368 0.97552 0.93217 0.91084 1.26036 0.95397 1.03379 0.95043 1.70137 1.50309 1.39044 0.98150 0.85313 0.77785 0.78545 0.78875 1.18021 1.20314 1.20673 0.88970 0.90346 0.90955 0.91783 0.92054 0.87168 0.85459 0.92615 0.93464 0.91313 0.87889 0.98484 1.00283 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.07 10.03 71.24 0.71 -1.35 16 2 C 0.00 -0.13 7.10 41.17 0.29 0.16 16 3 N -0.55 -21.68 10.62 -301.93 -3.21 -24.89 16 4 C 0.43 16.03 8.44 179.08 1.51 17.54 16 5 N -0.59 -15.64 3.37 -871.44 -2.93 -18.58 16 6 C 0.11 2.08 10.54 127.77 1.35 3.42 16 7 C 0.09 1.83 10.54 127.77 1.35 3.17 16 8 O -0.24 -10.10 10.50 -9.75 -0.10 -10.20 16 9 C -0.08 -3.62 6.63 24.74 0.16 -3.46 16 10 C -0.01 -0.36 5.30 29.85 0.16 -0.20 16 11 C 0.04 2.00 4.96 29.85 0.15 2.15 16 12 C -0.54 -30.70 9.11 25.60 0.23 -30.46 16 13 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 14 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 15 N -0.94 -57.96 13.29 21.45 0.28 -57.67 16 16 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 17 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 21 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 22 H 0.07 2.47 7.77 -2.39 -0.02 2.45 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 1.38 7.65 -2.39 -0.02 1.36 16 25 H 0.11 1.19 7.92 -2.38 -0.02 1.17 16 26 H 0.13 1.31 7.79 -2.39 -0.02 1.29 16 27 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.10 4.05 7.77 -2.39 -0.02 4.03 16 31 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 32 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 33 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -73.15 286.83 3.52 -69.63 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.08 Total: 4.23 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 6.38 Total: -8.62 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -5.86 Total: -101.14 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.10 Total: -10.20 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -73.15 3.52 -69.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217079.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.976 kcal (2) G-P(sol) polarization free energy of solvation -73.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds