Wall clock time and date at job start Mon Mar 30 2020 03:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47098 * 2 1 4 4 N 1.46499 * 109.46544 * 119.99743 * 2 1 3 5 5 C 1.38689 * 125.98945 * 300.03854 * 4 2 1 6 6 C 1.32864 * 107.91794 * 179.69411 * 5 4 2 7 7 N 1.38690 * 107.91248 * 0.43597 * 6 5 4 8 8 C 1.46499 * 125.98553 * 179.82719 * 7 6 5 9 9 H 1.08995 * 109.47737 * 179.68448 * 8 7 6 10 10 C 1.53010 * 109.47148 * 59.68739 * 8 7 6 11 11 C 1.50700 * 109.47089 * 299.69064 * 8 7 6 12 12 H 1.07999 * 120.00063 * 5.37216 * 11 8 7 13 13 C 1.37875 * 119.99909 * 185.37214 * 11 8 7 14 14 N 1.31520 * 119.99606 * 185.16623 * 13 11 8 15 15 Si 1.86797 * 120.00543 * 5.16613 * 13 11 8 16 16 H 1.48505 * 109.47204 * 270.00434 * 15 13 11 17 17 H 1.48499 * 109.47539 * 149.99780 * 15 13 11 18 18 H 1.48501 * 109.46843 * 29.99631 * 15 13 11 19 19 C 1.34759 * 108.03376 * 359.55742 * 7 6 5 20 20 O 1.21799 * 125.94675 * 180.24136 * 19 7 6 21 21 H 1.08999 * 109.47269 * 300.00545 * 1 2 3 22 22 H 1.08999 * 109.46749 * 60.00489 * 1 2 3 23 23 H 1.09004 * 109.47378 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46974 * 239.99907 * 2 1 3 25 25 H 1.09008 * 109.47010 * 299.99660 * 3 2 1 26 26 H 1.08999 * 109.47505 * 59.99599 * 3 2 1 27 27 H 1.08993 * 109.47145 * 179.97438 * 3 2 1 28 28 H 1.08001 * 126.04276 * 359.96912 * 5 4 2 29 29 H 1.08004 * 126.04532 * 180.27458 * 6 5 4 30 30 H 1.09000 * 109.46861 * 54.95834 * 10 8 7 31 31 H 1.08996 * 109.46831 * 174.96307 * 10 8 7 32 32 H 1.08999 * 109.47038 * 294.96201 * 10 8 7 33 33 H 0.96996 * 120.00397 * 354.99598 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.7602 -0.3270 2.5095 6 6 2.3701 -1.2009 3.3030 7 7 3.0281 -2.1200 2.4992 8 6 3.8295 -3.2538 2.9664 9 1 4.2179 -3.8024 2.1084 10 6 2.9553 -4.1823 3.8120 11 6 4.9777 -2.7475 3.8008 12 1 5.0500 -1.6965 4.0389 13 6 5.9360 -3.6259 4.2602 14 7 6.8809 -3.2029 5.0714 15 14 5.8925 -5.4166 3.7304 16 1 5.0723 -6.1973 4.6913 17 1 7.2746 -5.9590 3.7044 18 1 5.2956 -5.5173 2.3744 19 6 2.7962 -1.7908 1.2132 20 8 3.2170 -2.3842 0.2363 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6767 1.9563 -0.8901 26 1 1.6767 1.9564 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.1647 0.5149 2.8305 29 1 2.3581 -1.1950 4.3829 30 1 2.0772 -4.4773 3.2375 31 1 3.5261 -5.0698 4.0849 32 1 2.6398 -3.6610 4.7158 33 1 6.9471 -2.2600 5.2890 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261230124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:40 Heat of formation + Delta-G solvation = -13.192424 kcal Electronic energy + Delta-G solvation = -15843.939420 eV Core-core repulsion = 13290.995193 eV Total energy + Delta-G solvation = -2552.944227 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.13320 -37.89829 -37.77478 -35.77138 -33.78211 -31.07246 -29.52860 -28.12719 -26.91492 -24.26954 -23.69075 -21.31165 -20.96345 -19.60357 -18.30159 -17.15246 -16.98255 -15.96035 -15.81056 -15.36130 -15.06646 -14.92365 -14.44785 -14.29650 -13.91239 -13.57471 -13.43785 -13.16457 -13.11284 -12.64716 -12.54389 -12.19772 -11.99142 -11.92485 -11.73384 -11.33253 -11.15076 -10.74287 -10.55767 -8.88908 -8.51063 -6.53733 1.36810 1.45018 1.49802 1.53519 1.65242 1.96384 2.36699 2.77511 2.98124 3.71768 4.07986 4.16927 4.21279 4.35956 4.41975 4.49882 4.60710 4.71127 4.73562 4.82027 4.86925 4.87301 5.01104 5.07660 5.24544 5.29707 5.44539 5.60640 5.71530 5.91180 6.13590 6.45099 6.70499 7.22636 7.43595 8.54394 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.045636 B = 0.007790 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.398466 B = 3593.472942 C = 3686.696942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.138 3.862 3 C -0.152 4.152 4 N -0.522 5.522 5 C -0.015 4.015 6 C -0.014 4.014 7 N -0.514 5.514 8 C 0.245 3.755 9 H 0.031 0.969 10 C -0.148 4.148 11 C -0.604 4.604 12 H 0.032 0.968 13 C -0.010 4.010 14 N -0.930 5.930 15 Si 1.081 2.919 16 H -0.243 1.243 17 H -0.285 1.285 18 H -0.270 1.270 19 C 0.610 3.390 20 O -0.643 6.643 21 H 0.082 0.918 22 H 0.098 0.902 23 H 0.043 0.957 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.224 0.776 29 H 0.186 0.814 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.659 7.527 -5.136 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.037 3.963 3 C -0.209 4.209 4 N -0.242 5.242 5 C -0.137 4.137 6 C -0.137 4.137 7 N -0.230 5.230 8 C 0.143 3.857 9 H 0.048 0.952 10 C -0.206 4.206 11 C -0.642 4.642 12 H 0.051 0.949 13 C -0.210 4.210 14 N -0.566 5.566 15 Si 0.903 3.097 16 H -0.167 1.167 17 H -0.211 1.211 18 H -0.195 1.195 19 C 0.313 3.687 20 O -0.528 6.528 21 H 0.101 0.899 22 H 0.117 0.883 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.119 0.881 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.241 0.759 29 H 0.203 0.797 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.621 5.658 -5.601 16.648 hybrid contribution 0.074 1.592 -0.054 1.594 sum -14.548 7.250 -5.655 17.210 Atomic orbital electron populations 1.22089 0.91163 1.02412 1.04869 1.21415 0.96634 0.93704 0.84574 1.22117 1.00460 0.93447 1.04903 1.45696 1.45390 1.24900 1.08213 1.22173 1.07488 1.03575 0.80496 1.22140 1.00134 0.92605 0.98868 1.45767 1.44449 1.27090 1.05671 1.19247 0.89130 0.83322 0.94009 0.95155 1.22243 0.98852 0.99046 1.00413 1.22339 1.10178 0.95631 1.36033 0.94930 1.27010 0.91766 1.09593 0.92593 1.70931 1.35292 1.17129 1.33223 0.83566 0.77170 0.71274 0.77709 1.16714 1.21147 1.19546 1.16752 0.84029 0.84022 0.83926 1.90871 1.62813 1.61273 1.37863 0.89933 0.88340 0.93753 0.90860 0.88134 0.90010 0.94646 0.75940 0.79722 0.92693 0.92092 0.91187 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.25 71.98 0.67 -1.87 16 2 C 0.14 3.48 3.56 44.99 0.16 3.64 16 3 C -0.15 -2.91 9.25 71.98 0.67 -2.24 16 4 N -0.52 -17.65 2.63 -633.59 -1.66 -19.32 16 5 C -0.02 -0.42 10.50 82.43 0.87 0.45 16 6 C -0.01 -0.48 10.64 82.43 0.88 0.40 16 7 N -0.51 -23.54 2.62 -637.51 -1.67 -25.21 16 8 C 0.25 12.38 2.51 44.25 0.11 12.49 16 9 H 0.03 1.71 6.23 -2.39 -0.01 1.69 16 10 C -0.15 -6.15 8.78 71.99 0.63 -5.52 16 11 C -0.60 -34.61 8.90 25.60 0.23 -34.38 16 12 H 0.03 2.03 7.92 -2.91 -0.02 2.01 16 13 C -0.01 -0.59 5.43 84.65 0.46 -0.13 16 14 N -0.93 -57.64 13.70 21.45 0.29 -57.35 16 15 Si 1.08 50.81 25.29 68.60 1.73 52.54 16 16 H -0.24 -9.97 6.81 99.48 0.68 -9.29 16 17 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 18 H -0.27 -12.41 6.36 99.48 0.63 -11.77 16 19 C 0.61 28.46 8.52 179.06 1.53 29.98 16 20 O -0.64 -35.32 17.17 -4.66 -0.08 -35.40 16 21 H 0.08 1.10 7.94 -2.39 -0.02 1.08 16 22 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 23 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 2.21 7.73 -2.39 -0.02 2.19 16 25 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.08 1.26 7.94 -2.39 -0.02 1.24 16 27 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.22 3.58 8.06 -2.91 -0.02 3.56 16 29 H 0.19 5.76 8.06 -2.91 -0.02 5.74 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 2.49 4.40 -2.39 -0.01 2.48 16 32 H 0.07 2.72 8.08 -2.39 -0.02 2.70 16 33 H 0.26 16.01 8.72 -92.71 -0.81 15.21 16 Total: -1.00 -77.27 274.79 5.75 -71.53 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.94 Total: 10.39 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 6.19 Total: 2.82 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -3.04 Total: -101.87 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.08 Total: -35.40 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 1.73 Total: 52.54 kcal Total: -77.27 5.75 -71.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261230124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.333 kcal (2) G-P(sol) polarization free energy of solvation -77.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds