Wall clock time and date at job start Mon Mar 30 2020 03:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47274 * 2 1 4 4 N 1.46504 * 109.47159 * 120.00428 * 2 1 3 5 5 C 1.38698 * 125.98368 * 299.97075 * 4 2 1 6 6 C 1.32855 * 107.91502 * 180.02562 * 5 4 2 7 7 N 1.38699 * 107.91844 * 0.02562 * 6 5 4 8 8 C 1.46499 * 125.98907 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47391 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46840 * 300.02644 * 8 7 6 11 11 C 1.50699 * 109.47060 * 60.02386 * 8 7 6 12 12 H 1.07999 * 120.00019 * 0.02562 * 11 8 7 13 13 C 1.37877 * 120.00129 * 180.02562 * 11 8 7 14 14 N 1.31513 * 119.99969 * 180.02562 * 13 11 8 15 15 Si 1.86797 * 119.99840 * 359.97438 * 13 11 8 16 16 H 1.48497 * 109.47167 * 89.99961 * 15 13 11 17 17 H 1.48500 * 109.47028 * 210.00109 * 15 13 11 18 18 H 1.48497 * 109.47377 * 330.00144 * 15 13 11 19 19 C 1.34758 * 125.98029 * 120.30443 * 4 2 1 20 20 O 1.21791 * 125.95378 * 359.97438 * 19 4 2 21 21 H 1.09001 * 109.46721 * 300.00087 * 1 2 3 22 22 H 1.08994 * 109.47054 * 59.99393 * 1 2 3 23 23 H 1.08992 * 109.47192 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46721 * 239.99913 * 2 1 3 25 25 H 1.09003 * 109.47331 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47329 * 299.99824 * 3 2 1 27 27 H 1.09001 * 109.47318 * 60.00278 * 3 2 1 28 28 H 1.07999 * 126.04091 * 0.02562 * 5 4 2 29 29 H 1.07996 * 126.04632 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47194 * 299.99493 * 10 8 7 31 31 H 1.08992 * 109.47399 * 59.99666 * 10 8 7 32 32 H 1.09004 * 109.46724 * 180.02562 * 10 8 7 33 33 H 0.96999 * 119.99716 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7614 -0.3264 2.5095 6 6 2.3770 -1.1964 3.3028 7 7 3.0298 -2.1191 2.4990 8 6 3.8322 -3.2523 2.9661 9 1 4.2206 -3.8008 2.1079 10 6 4.9982 -2.7371 3.8123 11 6 2.9723 -4.1671 3.7996 12 1 1.9320 -3.9285 3.9645 13 6 3.5136 -5.3087 4.3517 14 7 2.7630 -6.1072 5.0786 15 14 5.3128 -5.7218 4.0658 16 1 6.1375 -5.1107 5.1389 17 1 5.4910 -7.1959 4.0833 18 1 5.7401 -5.1871 2.7480 19 6 2.8011 -1.7876 1.2129 20 8 3.2257 -2.3781 0.2360 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.1662 0.5156 2.8306 29 1 2.3709 -1.1864 4.3827 30 1 5.6202 -2.0755 3.2095 31 1 4.6098 -2.1887 4.6704 32 1 5.5955 -3.5803 4.1595 33 1 3.1438 -6.9105 5.4667 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261230128.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:42 Heat of formation + Delta-G solvation = 17.144392 kcal Electronic energy + Delta-G solvation = -15833.324761 eV Core-core repulsion = 13281.696037 eV Total energy + Delta-G solvation = -2551.628724 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.56291 -36.43763 -35.98124 -34.06298 -31.86959 -29.58157 -28.01586 -27.25212 -25.23437 -22.82506 -22.25282 -19.75574 -19.42514 -16.89062 -16.66443 -15.64790 -15.29899 -14.58316 -14.48707 -13.84767 -13.74444 -13.22709 -12.97720 -12.65718 -12.34878 -12.31662 -12.09073 -11.86965 -11.52528 -11.41312 -10.96597 -10.93219 -10.68015 -10.25006 -9.79669 -9.56003 -9.45585 -8.90079 -8.67771 -6.96951 -6.21887 -4.24550 2.91064 2.95360 3.18342 3.32382 3.33558 3.70565 4.26114 4.27971 4.78036 5.07730 5.09869 5.19875 5.44046 5.50569 5.63707 5.71138 5.87648 5.98746 6.03521 6.11447 6.19249 6.21753 6.28039 6.30949 6.63419 6.71265 7.07867 7.28207 7.44305 7.67398 8.23185 8.35913 8.79842 9.12483 9.37308 10.90518 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.047468 B = 0.007702 C = 0.007505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.728873 B = 3634.541282 C = 3730.012030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 C -0.158 4.158 4 N -0.532 5.532 5 C -0.057 4.057 6 C 0.031 3.969 7 N -0.501 5.501 8 C 0.247 3.753 9 H 0.061 0.939 10 C -0.161 4.161 11 C -0.533 4.533 12 H 0.083 0.917 13 C 0.079 3.921 14 N -0.890 5.890 15 Si 0.882 3.118 16 H -0.274 1.274 17 H -0.291 1.291 18 H -0.263 1.263 19 C 0.640 3.360 20 O -0.591 6.591 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.168 0.832 29 H 0.173 0.827 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 14.228 -4.751 15.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 C -0.216 4.216 4 N -0.254 5.254 5 C -0.179 4.179 6 C -0.096 4.096 7 N -0.216 5.216 8 C 0.146 3.854 9 H 0.079 0.921 10 C -0.219 4.219 11 C -0.571 4.571 12 H 0.101 0.899 13 C -0.125 4.125 14 N -0.526 5.526 15 Si 0.711 3.289 16 H -0.201 1.201 17 H -0.218 1.218 18 H -0.188 1.188 19 C 0.343 3.657 20 O -0.472 6.472 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.115 0.885 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.185 0.815 29 H 0.190 0.810 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.488 13.572 -5.359 14.667 hybrid contribution 0.806 -0.314 0.184 0.884 sum -0.683 13.258 -5.174 14.248 Atomic orbital electron populations 1.22139 0.94353 1.02916 1.02313 1.20963 0.94325 0.92820 0.86984 1.22136 1.01906 0.95202 1.02367 1.45401 1.47019 1.26935 1.06062 1.21345 1.09767 1.04559 0.82264 1.21712 0.98945 0.90933 0.97981 1.45748 1.44865 1.26098 1.04924 1.19371 0.88436 0.82116 0.95470 0.92108 1.22463 0.98507 1.00395 1.00489 1.21116 0.98324 1.06173 1.31496 0.89924 1.24837 0.97955 0.95489 0.94211 1.69861 1.36196 1.13504 1.33066 0.86933 0.85384 0.77060 0.79476 1.20108 1.21835 1.18824 1.16352 0.82801 0.82205 0.84328 1.90942 1.60626 1.59210 1.36409 0.91973 0.91344 0.91928 0.88458 0.92162 0.91325 0.91980 0.81497 0.80952 0.94481 0.92055 0.92649 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.25 37.16 0.34 -1.42 16 2 C 0.15 2.06 3.56 -67.93 -0.24 1.81 16 3 C -0.16 -1.64 9.25 37.15 0.34 -1.30 16 4 N -0.53 -9.26 2.63 -114.26 -0.30 -9.56 16 5 C -0.06 -0.86 10.50 -16.30 -0.17 -1.03 16 6 C 0.03 0.55 10.58 -16.30 -0.17 0.38 16 7 N -0.50 -11.22 2.62 -115.50 -0.30 -11.52 16 8 C 0.25 6.10 2.53 -69.08 -0.17 5.93 16 9 H 0.06 1.65 6.78 -51.93 -0.35 1.30 16 10 C -0.16 -3.46 8.73 37.16 0.32 -3.13 16 11 C -0.53 -14.85 9.09 -34.44 -0.31 -15.16 16 12 H 0.08 2.50 7.99 -52.49 -0.42 2.08 16 13 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 14 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 15 Si 0.88 21.47 24.37 -169.99 -4.14 17.33 16 16 H -0.27 -6.34 6.87 56.52 0.39 -5.95 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.26 -6.33 6.53 56.52 0.37 -5.96 16 19 C 0.64 14.51 8.52 -86.94 -0.74 13.77 16 20 O -0.59 -15.42 17.17 5.11 0.09 -15.34 16 21 H 0.06 0.62 7.94 -51.93 -0.41 0.21 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.10 1.45 7.73 -51.93 -0.40 1.05 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.58 7.94 -51.93 -0.41 0.17 16 28 H 0.17 1.83 8.06 -52.49 -0.42 1.40 16 29 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.21 7.94 -51.93 -0.41 0.80 16 32 H 0.06 1.22 3.27 -51.93 -0.17 1.05 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 273.44 15.07 4.12 4.12 Total: -1.00 -33.21 273.44 -5.38 -38.60 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -4.72 Total: 0.17 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -0.90 Total: 1.98 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.17 Total: -46.86 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.09 Total: -15.34 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.14 Total: 17.33 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.21 -5.38 -38.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261230128.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.742 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds