Wall clock time and date at job start Mon Mar 30 2020 03:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47274 * 2 1 4 4 N 1.46504 * 109.47159 * 120.00428 * 2 1 3 5 5 C 1.38698 * 125.98368 * 299.97075 * 4 2 1 6 6 C 1.32855 * 107.91502 * 180.02562 * 5 4 2 7 7 N 1.38699 * 107.91844 * 0.02562 * 6 5 4 8 8 C 1.46499 * 125.98907 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47391 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46840 * 300.02644 * 8 7 6 11 11 C 1.50699 * 109.47060 * 60.02386 * 8 7 6 12 12 H 1.07999 * 120.00019 * 0.02562 * 11 8 7 13 13 C 1.37877 * 120.00129 * 180.02562 * 11 8 7 14 14 N 1.31513 * 119.99969 * 180.02562 * 13 11 8 15 15 Si 1.86797 * 119.99840 * 359.97438 * 13 11 8 16 16 H 1.48497 * 109.47167 * 89.99961 * 15 13 11 17 17 H 1.48500 * 109.47028 * 210.00109 * 15 13 11 18 18 H 1.48497 * 109.47377 * 330.00144 * 15 13 11 19 19 C 1.34758 * 125.98029 * 120.30443 * 4 2 1 20 20 O 1.21791 * 125.95378 * 359.97438 * 19 4 2 21 21 H 1.09001 * 109.46721 * 300.00087 * 1 2 3 22 22 H 1.08994 * 109.47054 * 59.99393 * 1 2 3 23 23 H 1.08992 * 109.47192 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46721 * 239.99913 * 2 1 3 25 25 H 1.09003 * 109.47331 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47329 * 299.99824 * 3 2 1 27 27 H 1.09001 * 109.47318 * 60.00278 * 3 2 1 28 28 H 1.07999 * 126.04091 * 0.02562 * 5 4 2 29 29 H 1.07996 * 126.04632 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47194 * 299.99493 * 10 8 7 31 31 H 1.08992 * 109.47399 * 59.99666 * 10 8 7 32 32 H 1.09004 * 109.46724 * 180.02562 * 10 8 7 33 33 H 0.96999 * 119.99716 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7614 -0.3264 2.5095 6 6 2.3770 -1.1964 3.3028 7 7 3.0298 -2.1191 2.4990 8 6 3.8322 -3.2523 2.9661 9 1 4.2206 -3.8008 2.1079 10 6 4.9982 -2.7371 3.8123 11 6 2.9723 -4.1671 3.7996 12 1 1.9320 -3.9285 3.9645 13 6 3.5136 -5.3087 4.3517 14 7 2.7630 -6.1072 5.0786 15 14 5.3128 -5.7218 4.0658 16 1 6.1375 -5.1107 5.1389 17 1 5.4910 -7.1959 4.0833 18 1 5.7401 -5.1871 2.7480 19 6 2.8011 -1.7876 1.2129 20 8 3.2257 -2.3781 0.2360 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.1662 0.5156 2.8306 29 1 2.3709 -1.1864 4.3827 30 1 5.6202 -2.0755 3.2095 31 1 4.6098 -2.1887 4.6704 32 1 5.5955 -3.5803 4.1595 33 1 3.1438 -6.9105 5.4667 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261230128.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:41 Heat of formation + Delta-G solvation = -4.966045 kcal Electronic energy + Delta-G solvation = -15834.283541 eV Core-core repulsion = 13281.696037 eV Total energy + Delta-G solvation = -2552.587504 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.09789 -37.88346 -37.74622 -35.71876 -33.78988 -31.14256 -29.49951 -28.09487 -27.26869 -24.41061 -23.68412 -21.35005 -20.92290 -18.78893 -18.35212 -17.29305 -16.88517 -16.36502 -15.84865 -15.35932 -15.03073 -14.92028 -14.36309 -14.18863 -14.06624 -13.65214 -13.36084 -13.13070 -13.07763 -12.82048 -12.57984 -12.16890 -12.14378 -11.92531 -11.65725 -11.51718 -11.25401 -10.86981 -10.48527 -8.50257 -8.41164 -6.48934 1.24338 1.33918 1.42083 1.47834 1.58781 1.99439 2.23005 2.80552 2.92919 3.75150 4.11358 4.19597 4.23009 4.37615 4.39958 4.48532 4.59542 4.74252 4.76781 4.84989 4.86388 4.90437 5.02040 5.07842 5.25811 5.32857 5.36119 5.50475 5.69570 6.04122 6.29631 6.52812 6.73600 7.15187 7.46053 8.74728 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.047468 B = 0.007702 C = 0.007505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.728873 B = 3634.541282 C = 3730.012030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.138 3.862 3 C -0.148 4.148 4 N -0.523 5.523 5 C -0.016 4.016 6 C -0.011 4.011 7 N -0.514 5.514 8 C 0.250 3.750 9 H 0.028 0.972 10 C -0.150 4.150 11 C -0.536 4.536 12 H 0.045 0.955 13 C 0.029 3.971 14 N -0.933 5.933 15 Si 0.941 3.059 16 H -0.245 1.245 17 H -0.291 1.291 18 H -0.263 1.263 19 C 0.612 3.388 20 O -0.644 6.644 21 H 0.082 0.918 22 H 0.099 0.901 23 H 0.035 0.965 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.225 0.775 29 H 0.190 0.810 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 17.060 -4.455 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.037 3.963 3 C -0.206 4.206 4 N -0.242 5.242 5 C -0.138 4.138 6 C -0.134 4.134 7 N -0.230 5.230 8 C 0.148 3.852 9 H 0.046 0.954 10 C -0.208 4.208 11 C -0.574 4.574 12 H 0.063 0.937 13 C -0.171 4.171 14 N -0.571 5.571 15 Si 0.767 3.233 16 H -0.170 1.170 17 H -0.218 1.218 18 H -0.188 1.188 19 C 0.314 3.686 20 O -0.529 6.529 21 H 0.101 0.899 22 H 0.118 0.882 23 H 0.054 0.946 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.241 0.759 29 H 0.207 0.793 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.471 16.479 -5.044 17.296 hybrid contribution 0.623 -1.120 0.028 1.281 sum -0.848 15.359 -5.016 16.180 Atomic orbital electron populations 1.22114 0.91943 1.01993 1.04882 1.21404 0.96154 0.94142 0.84588 1.22088 1.00851 0.92757 1.04860 1.45682 1.45046 1.25233 1.08259 1.22189 1.07049 1.04117 0.80408 1.22192 1.00871 0.91357 0.99024 1.45660 1.45321 1.26221 1.05749 1.19063 0.89346 0.82825 0.93995 0.95424 1.22301 0.97181 1.00636 1.00686 1.21221 0.97184 1.07259 1.31702 0.93660 1.25629 1.02493 0.95185 0.93809 1.69982 1.38376 1.14275 1.34469 0.85984 0.80346 0.76877 0.80123 1.17019 1.21776 1.18835 1.16722 0.84214 0.83783 0.83860 1.90870 1.62884 1.61220 1.37892 0.89946 0.88234 0.94570 0.90922 0.93794 0.88421 0.89878 0.75894 0.79342 0.92551 0.90344 0.92981 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.25 71.98 0.67 -2.23 16 2 C 0.14 3.47 3.56 44.99 0.16 3.63 16 3 C -0.15 -2.52 9.25 71.98 0.67 -1.85 16 4 N -0.52 -17.49 2.63 -633.59 -1.66 -19.16 16 5 C -0.02 -0.43 10.50 82.43 0.87 0.44 16 6 C -0.01 -0.38 10.58 82.43 0.87 0.49 16 7 N -0.51 -23.28 2.62 -637.52 -1.67 -24.95 16 8 C 0.25 12.59 2.53 44.25 0.11 12.70 16 9 H 0.03 1.56 6.78 -2.39 -0.02 1.55 16 10 C -0.15 -6.28 8.73 71.98 0.63 -5.65 16 11 C -0.54 -30.77 9.09 25.60 0.23 -30.53 16 12 H 0.05 2.87 7.99 -2.91 -0.02 2.84 16 13 C 0.03 1.66 5.45 84.65 0.46 2.12 16 14 N -0.93 -56.96 13.96 21.45 0.30 -56.66 16 15 Si 0.94 44.40 24.37 68.60 1.67 46.07 16 16 H -0.25 -10.41 6.87 99.48 0.68 -9.73 16 17 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 18 H -0.26 -12.37 6.53 99.48 0.65 -11.72 16 19 C 0.61 28.31 8.52 179.06 1.53 29.83 16 20 O -0.64 -35.20 17.17 -4.64 -0.08 -35.28 16 21 H 0.08 1.25 7.94 -2.39 -0.02 1.24 16 22 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.07 2.18 7.73 -2.39 -0.02 2.17 16 25 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 1.10 7.94 -2.39 -0.02 1.08 16 28 H 0.22 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.19 5.70 8.06 -2.91 -0.02 5.68 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.08 2.97 7.94 -2.39 -0.02 2.95 16 32 H 0.05 2.19 3.27 -2.39 -0.01 2.19 16 33 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -77.03 273.44 5.75 -71.28 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.00 Total: 9.74 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 6.19 Total: 8.95 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -3.03 Total: -100.76 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.08 Total: -35.28 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.67 Total: 46.07 kcal Total: -77.03 5.75 -71.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261230128.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.312 kcal (2) G-P(sol) polarization free energy of solvation -77.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds