Wall clock time and date at job start Mon Mar 30 2020 02:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35757 * 117.00198 * 2 1 4 4 C 1.35949 * 126.19748 * 270.14869 * 3 2 1 5 5 C 1.50712 * 126.07964 * 0.03620 * 4 3 2 6 6 C 1.50697 * 109.47095 * 85.27559 * 5 4 3 7 7 H 1.08002 * 120.00310 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00132 * 179.97438 * 6 5 4 9 9 N 1.31526 * 119.99683 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00464 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47260 * 90.00281 * 10 8 6 12 12 H 1.48500 * 109.47726 * 210.00384 * 10 8 6 13 13 H 1.48500 * 109.47277 * 330.00421 * 10 8 6 14 14 C 1.39813 * 107.83860 * 180.29127 * 4 3 2 15 15 N 1.30832 * 108.28163 * 359.74026 * 14 4 3 16 16 N 1.35131 * 126.19410 * 89.99789 * 3 2 1 17 17 C 1.46500 * 126.03745 * 359.96775 * 16 3 2 18 18 C 1.52997 * 109.47473 * 239.71728 * 17 16 3 19 19 C 1.53006 * 109.47249 * 119.71429 * 17 16 3 20 20 H 1.09003 * 109.46652 * 60.00330 * 1 2 3 21 21 H 1.08997 * 109.47110 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.46863 * 300.00207 * 1 2 3 23 23 H 1.08991 * 109.47006 * 205.28122 * 5 4 3 24 24 H 1.09000 * 109.46724 * 325.28172 * 5 4 3 25 25 H 0.97003 * 119.99699 * 179.97438 * 9 8 6 26 26 H 1.08006 * 125.85884 * 179.69946 * 14 4 3 27 27 H 1.08998 * 109.46845 * 359.72277 * 17 16 3 28 28 H 1.09002 * 109.47153 * 59.99757 * 18 17 16 29 29 H 1.09001 * 109.46832 * 299.99948 * 18 17 16 30 30 H 1.09004 * 109.47261 * 179.97438 * 18 17 16 31 31 H 1.08993 * 109.46955 * 180.02562 * 19 17 16 32 32 H 1.09000 * 109.47050 * 300.00351 * 19 17 16 33 33 H 1.09001 * 109.47002 * 60.00085 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 2.4074 1.9262 -1.0971 5 6 2.1951 1.5195 -2.5327 6 6 0.8125 1.9281 -2.9713 7 1 0.1535 2.4323 -2.2800 8 6 0.3891 1.6593 -4.2556 9 7 1.1918 1.0457 -5.0977 10 14 -1.3244 2.1664 -4.7996 11 1 -1.2779 3.5376 -5.3678 12 1 -1.8167 1.2193 -5.8320 13 1 -2.2411 2.1455 -3.6315 14 6 3.0169 3.1049 -0.6567 15 7 3.0176 3.1026 0.6516 16 7 2.4077 1.9206 1.0905 17 6 2.2040 1.5226 2.4856 18 6 1.3383 2.5671 3.1929 19 6 3.5585 1.4213 3.1900 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 2.9363 2.0108 -3.1629 24 1 2.3003 0.4384 -2.6233 25 1 0.8937 0.8562 -6.0012 26 1 3.4188 3.8835 -1.2883 27 1 1.7045 0.5543 2.5180 28 1 0.3733 2.6393 2.6911 29 1 1.8379 3.5353 3.1605 30 1 1.1864 2.2707 4.2308 31 1 3.4070 1.1247 4.2279 32 1 4.1753 0.6771 2.6862 33 1 4.0582 2.3895 3.1577 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261232889.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:12 Heat of formation + Delta-G solvation = 30.082836 kcal Electronic energy + Delta-G solvation = -15729.366202 eV Core-core repulsion = 13178.298531 eV Total energy + Delta-G solvation = -2551.067671 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73481 -37.26728 -35.50552 -33.12274 -30.41171 -29.63273 -27.27539 -27.04509 -25.76381 -22.96025 -22.35012 -19.76367 -19.19344 -17.30516 -16.28356 -15.46443 -15.06069 -14.62511 -14.27789 -14.07118 -13.94272 -13.01742 -12.68276 -12.52503 -12.25184 -12.09681 -11.86463 -11.54871 -11.30994 -11.15919 -11.10648 -10.78264 -10.60876 -10.27929 -9.60394 -9.39352 -9.30206 -8.60877 -8.34329 -7.35464 -5.95966 -3.99173 2.28219 2.87908 3.31739 3.38037 3.39756 3.54004 4.33971 4.49493 4.67906 5.00678 5.09326 5.36388 5.41473 5.51919 5.56293 5.69656 5.75470 5.79788 5.84335 6.11069 6.17145 6.22091 6.33340 6.49617 6.83332 7.00786 7.41002 7.68054 7.86152 8.00456 8.20441 8.39226 8.45371 9.05445 9.63272 11.13214 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.038472 B = 0.007756 C = 0.007392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.631603 B = 3609.371580 C = 3786.880638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.307 6.307 3 C 0.221 3.779 4 C -0.179 4.179 5 C 0.087 3.913 6 C -0.505 4.505 7 H 0.051 0.949 8 C 0.058 3.942 9 N -0.894 5.894 10 Si 0.889 3.111 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.049 3.951 15 N -0.294 5.294 16 N -0.384 5.384 17 C 0.157 3.843 18 C -0.158 4.158 19 C -0.156 4.156 20 H 0.073 0.927 21 H 0.090 0.910 22 H 0.032 0.968 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.261 0.739 26 H 0.180 0.820 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 -0.032 13.950 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.216 6.216 3 C 0.056 3.944 4 C -0.191 4.191 5 C 0.049 3.951 6 C -0.543 4.543 7 H 0.070 0.930 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.717 3.283 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.201 1.201 14 C -0.135 4.135 15 N -0.119 5.119 16 N -0.179 5.179 17 C 0.055 3.945 18 C -0.216 4.216 19 C -0.214 4.214 20 H 0.092 0.908 21 H 0.109 0.891 22 H 0.051 0.949 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.197 0.803 27 H 0.112 0.888 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.493 0.217 14.912 14.922 hybrid contribution -1.458 -0.078 -1.076 1.814 sum -0.965 0.139 13.836 13.870 Atomic orbital electron populations 1.23120 0.78783 1.02891 1.01567 1.86007 1.20373 1.22013 1.93235 1.18781 1.01520 0.87352 0.86728 1.20759 1.05822 0.94776 0.97706 1.17643 0.96706 0.96941 0.83814 1.21099 0.99076 1.37527 0.96646 0.93028 1.24990 0.97190 0.95377 0.96732 1.69963 1.35848 1.41650 1.05838 0.86646 0.84808 0.78446 0.78395 1.20642 1.21233 1.20095 1.23586 0.99929 0.98473 0.91553 1.77172 1.20573 1.00993 1.13123 1.48998 1.48656 1.15343 1.04858 1.21083 0.97178 0.98347 0.77900 1.22114 0.99818 0.99838 0.99823 1.22091 0.96227 1.03328 0.99794 0.90786 0.89109 0.94924 0.95428 0.95440 0.92974 0.80298 0.88823 0.92410 0.91150 0.91299 0.91390 0.92160 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.13 101.05 1.12 1.67 16 2 O -0.31 -6.23 10.17 -18.98 -0.19 -6.42 16 3 C 0.22 4.69 6.94 -16.92 -0.12 4.58 16 4 C -0.18 -4.13 5.31 -104.85 -0.56 -4.69 16 5 C 0.09 2.30 5.43 -29.03 -0.16 2.14 16 6 C -0.50 -14.08 8.56 -34.44 -0.29 -14.38 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 10 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.05 1.00 11.95 -17.39 -0.21 0.79 16 15 N -0.29 -5.73 12.42 30.61 0.38 -5.35 16 16 N -0.38 -7.13 3.28 -54.98 -0.18 -7.31 16 17 C 0.16 2.21 3.69 -67.93 -0.25 1.96 16 18 C -0.16 -1.91 9.45 37.16 0.35 -1.55 16 19 C -0.16 -1.88 9.45 37.16 0.35 -1.53 16 20 H 0.07 1.47 7.60 -51.93 -0.39 1.07 16 21 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 22 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.18 3.20 8.06 -52.48 -0.42 2.78 16 27 H 0.09 1.25 7.77 -51.93 -0.40 0.84 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 288.28 15.07 4.34 4.34 Total: -1.00 -31.30 288.28 -4.78 -36.08 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.99 Total: -2.51 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 0.14 Total: -9.47 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.94 Total: -38.41 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.19 Total: -6.42 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.30 -4.78 -36.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232889.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.163 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds