Wall clock time and date at job start Mon Mar 30 2020 02:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35757 * 117.00198 * 2 1 4 4 C 1.35949 * 126.19748 * 270.14869 * 3 2 1 5 5 C 1.50712 * 126.07964 * 0.03620 * 4 3 2 6 6 C 1.50697 * 109.47095 * 85.27559 * 5 4 3 7 7 H 1.08002 * 120.00310 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00132 * 179.97438 * 6 5 4 9 9 N 1.31526 * 119.99683 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00464 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47260 * 90.00281 * 10 8 6 12 12 H 1.48500 * 109.47726 * 210.00384 * 10 8 6 13 13 H 1.48500 * 109.47277 * 330.00421 * 10 8 6 14 14 C 1.39813 * 107.83860 * 180.29127 * 4 3 2 15 15 N 1.30832 * 108.28163 * 359.74026 * 14 4 3 16 16 N 1.35131 * 126.19410 * 89.99789 * 3 2 1 17 17 C 1.46500 * 126.03745 * 359.96775 * 16 3 2 18 18 C 1.52997 * 109.47473 * 239.71728 * 17 16 3 19 19 C 1.53006 * 109.47249 * 119.71429 * 17 16 3 20 20 H 1.09003 * 109.46652 * 60.00330 * 1 2 3 21 21 H 1.08997 * 109.47110 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.46863 * 300.00207 * 1 2 3 23 23 H 1.08991 * 109.47006 * 205.28122 * 5 4 3 24 24 H 1.09000 * 109.46724 * 325.28172 * 5 4 3 25 25 H 0.97003 * 119.99699 * 179.97438 * 9 8 6 26 26 H 1.08006 * 125.85884 * 179.69946 * 14 4 3 27 27 H 1.08998 * 109.46845 * 359.72277 * 17 16 3 28 28 H 1.09002 * 109.47153 * 59.99757 * 18 17 16 29 29 H 1.09001 * 109.46832 * 299.99948 * 18 17 16 30 30 H 1.09004 * 109.47261 * 179.97438 * 18 17 16 31 31 H 1.08993 * 109.46955 * 180.02562 * 19 17 16 32 32 H 1.09000 * 109.47050 * 300.00351 * 19 17 16 33 33 H 1.09001 * 109.47002 * 60.00085 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 2.4074 1.9262 -1.0971 5 6 2.1951 1.5195 -2.5327 6 6 0.8125 1.9281 -2.9713 7 1 0.1535 2.4323 -2.2800 8 6 0.3891 1.6593 -4.2556 9 7 1.1918 1.0457 -5.0977 10 14 -1.3244 2.1664 -4.7996 11 1 -1.2779 3.5376 -5.3678 12 1 -1.8167 1.2193 -5.8320 13 1 -2.2411 2.1455 -3.6315 14 6 3.0169 3.1049 -0.6567 15 7 3.0176 3.1026 0.6516 16 7 2.4077 1.9206 1.0905 17 6 2.2040 1.5226 2.4856 18 6 1.3383 2.5671 3.1929 19 6 3.5585 1.4213 3.1900 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 2.9363 2.0108 -3.1629 24 1 2.3003 0.4384 -2.6233 25 1 0.8937 0.8562 -6.0012 26 1 3.4188 3.8835 -1.2883 27 1 1.7045 0.5543 2.5180 28 1 0.3733 2.6393 2.6911 29 1 1.8379 3.5353 3.1605 30 1 1.1864 2.2707 4.2308 31 1 3.4070 1.1247 4.2279 32 1 4.1753 0.6771 2.6862 33 1 4.0582 2.3895 3.1577 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261232889.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:12 Heat of formation + Delta-G solvation = 9.692684 kcal Electronic energy + Delta-G solvation = -15730.250386 eV Core-core repulsion = 13178.298531 eV Total energy + Delta-G solvation = -2551.951854 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.30298 -38.82161 -36.76265 -35.18508 -32.26846 -31.13024 -28.72762 -28.20110 -27.45494 -24.86819 -23.80630 -21.32859 -20.69968 -18.73155 -18.43600 -17.01683 -16.59491 -16.52129 -15.62656 -15.31354 -15.25394 -14.61819 -14.34220 -14.12654 -13.68889 -13.49028 -13.15578 -13.07657 -12.82527 -12.68189 -12.49108 -12.33081 -12.28028 -11.93046 -11.50262 -11.43419 -10.95843 -10.52524 -10.10845 -9.08684 -8.11273 -6.24371 0.71114 1.40829 1.42308 1.44350 1.52652 1.87588 2.44792 2.86182 3.17551 3.51204 3.97242 4.01838 4.13607 4.26149 4.49215 4.59678 4.64118 4.67869 4.69858 4.79271 4.80235 4.88545 5.12938 5.19538 5.22158 5.42228 5.49895 5.70743 5.81735 5.86204 6.28470 6.63425 6.79545 6.86889 7.42875 8.97002 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.038472 B = 0.007756 C = 0.007392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.631603 B = 3609.371580 C = 3786.880638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.321 6.321 3 C 0.225 3.775 4 C -0.222 4.222 5 C 0.102 3.898 6 C -0.514 4.514 7 H 0.049 0.951 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.959 3.041 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.265 1.265 14 C 0.045 3.955 15 N -0.289 5.289 16 N -0.372 5.372 17 C 0.141 3.859 18 C -0.150 4.150 19 C -0.150 4.150 20 H 0.040 0.960 21 H 0.123 0.877 22 H 0.058 0.942 23 H 0.005 0.995 24 H -0.007 1.007 25 H 0.264 0.736 26 H 0.197 0.803 27 H 0.105 0.895 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.046 0.954 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 0.193 16.086 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.231 6.231 3 C 0.058 3.942 4 C -0.234 4.234 5 C 0.064 3.936 6 C -0.552 4.552 7 H 0.068 0.932 8 C -0.192 4.192 9 N -0.572 5.572 10 Si 0.784 3.216 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.190 1.190 14 C -0.139 4.139 15 N -0.114 5.114 16 N -0.167 5.167 17 C 0.041 3.959 18 C -0.208 4.208 19 C -0.207 4.207 20 H 0.059 0.941 21 H 0.141 0.859 22 H 0.077 0.923 23 H 0.023 0.977 24 H 0.012 0.988 25 H 0.073 0.927 26 H 0.214 0.786 27 H 0.123 0.877 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.800 0.452 17.089 17.113 hybrid contribution -1.036 -0.218 -1.635 1.948 sum -1.835 0.234 15.454 15.564 Atomic orbital electron populations 1.23273 0.76904 1.04969 1.01170 1.85966 1.22108 1.21659 1.93343 1.18779 1.00865 0.87237 0.87297 1.20520 1.09262 0.97069 0.96540 1.17272 0.95773 0.94371 0.86196 1.21321 0.99641 1.37353 0.96901 0.93225 1.25863 1.01443 0.95191 0.96713 1.70095 1.38022 1.42770 1.06288 0.85541 0.79689 0.78209 0.78178 1.19904 1.20651 1.18963 1.23776 0.99866 0.98170 0.92085 1.77140 1.20409 1.01504 1.12381 1.49382 1.46951 1.14248 1.06083 1.21654 0.99060 0.99593 0.75642 1.22084 0.98448 0.98646 1.01632 1.22063 0.94530 1.02547 1.01587 0.94077 0.85875 0.92318 0.97696 0.98850 0.92744 0.78614 0.87667 0.93439 0.92145 0.87446 0.87561 0.93440 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 11.13 113.37 1.26 2.30 16 2 O -0.32 -12.91 10.17 -90.83 -0.92 -13.83 16 3 C 0.23 9.56 6.94 83.65 0.58 10.14 16 4 C -0.22 -10.50 5.31 -20.01 -0.11 -10.61 16 5 C 0.10 5.66 5.43 29.10 0.16 5.82 16 6 C -0.51 -29.40 8.56 25.60 0.22 -29.19 16 7 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 8 C 0.01 0.32 5.46 84.65 0.46 0.78 16 9 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 10 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 14 C 0.04 1.84 11.95 85.22 1.02 2.86 16 15 N -0.29 -11.04 12.42 -57.06 -0.71 -11.75 16 16 N -0.37 -13.38 3.28 -439.18 -1.44 -14.83 16 17 C 0.14 3.58 3.69 44.99 0.17 3.75 16 18 C -0.15 -3.14 9.45 71.98 0.68 -2.46 16 19 C -0.15 -3.17 9.45 71.98 0.68 -2.49 16 20 H 0.04 1.63 7.60 -2.39 -0.02 1.61 16 21 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 22 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 24 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 25 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 26 H 0.20 7.08 8.06 -2.91 -0.02 7.05 16 27 H 0.11 2.46 7.77 -2.39 -0.02 2.44 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -68.92 288.28 5.43 -63.48 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.07 Total: 6.18 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 5.12 Total: -19.09 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.86 Total: -82.87 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.92 Total: -13.83 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -68.92 5.43 -63.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232889.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.177 kcal (2) G-P(sol) polarization free energy of solvation -68.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds