Wall clock time and date at job start Mon Mar 30 2020 02:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47480 * 2 1 4 4 C 1.52998 * 109.47047 * 239.99766 * 2 1 3 5 5 C 1.50703 * 109.46995 * 120.00089 * 2 1 3 6 6 N 1.30254 * 125.61969 * 60.02476 * 5 2 1 7 7 C 1.34472 * 108.70204 * 179.97438 * 6 5 2 8 8 C 1.34333 * 107.67206 * 359.97438 * 7 6 5 9 9 C 1.50697 * 126.44662 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47188 * 200.02813 * 9 8 7 11 11 N 1.46905 * 109.47125 * 320.02591 * 9 8 7 12 12 C 1.50703 * 109.47094 * 80.02518 * 9 8 7 13 13 H 1.08000 * 119.99934 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99701 * 179.97438 * 12 9 8 15 15 N 1.31513 * 120.00608 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 119.99602 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47141 * 90.00118 * 16 14 12 18 18 H 1.48505 * 109.46875 * 210.00255 * 16 14 12 19 19 H 1.48499 * 109.47153 * 329.99723 * 16 14 12 20 20 O 1.33968 * 125.61989 * 240.30297 * 5 2 1 21 21 H 1.09004 * 109.46499 * 299.99998 * 1 2 3 22 22 H 1.08994 * 109.47194 * 59.99475 * 1 2 3 23 23 H 1.08994 * 109.47471 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46860 * 179.97438 * 3 2 1 25 25 H 1.08992 * 109.46818 * 300.00469 * 3 2 1 26 26 H 1.09000 * 109.46772 * 60.00365 * 3 2 1 27 27 H 1.09004 * 109.47789 * 300.00381 * 4 2 1 28 28 H 1.09003 * 109.46691 * 60.00340 * 4 2 1 29 29 H 1.09004 * 109.47452 * 179.97438 * 4 2 1 30 30 H 1.08006 * 126.16703 * 179.97438 * 7 6 5 31 31 H 1.00901 * 110.99869 * 296.04907 * 11 9 8 32 32 H 1.00896 * 110.99543 * 60.00030 * 11 9 8 33 33 H 0.96991 * 120.00497 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.7864 -1.9506 1.5440 7 6 2.4000 -2.2311 2.7072 8 6 3.0394 -1.1202 3.1092 9 6 3.8618 -0.9645 4.3624 10 1 3.9549 0.0936 4.6067 11 7 3.2023 -1.6669 5.4713 12 6 5.2320 -1.5512 4.1402 13 1 5.4824 -1.9923 3.1867 14 6 6.1662 -1.5239 5.1538 15 7 5.8615 -0.9863 6.3147 16 14 7.8649 -2.2506 4.8780 17 1 8.7726 -1.2007 4.3498 18 1 8.3983 -2.7644 6.1652 19 1 7.7741 -3.3644 3.9001 20 8 2.8010 -0.1691 2.1848 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 3.1301 1.4423 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6768 1.9562 0.8900 27 1 1.6766 -1.7490 -1.2493 28 1 1.6766 -0.2074 -2.1392 29 1 3.1300 -0.7209 -1.2495 30 1 2.3820 -3.1788 3.2249 31 1 2.3079 -1.2502 5.6824 32 1 3.1041 -2.6505 5.2689 33 1 6.5189 -0.9668 7.0276 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261240804.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:36 Heat of formation + Delta-G solvation = 5.417251 kcal Electronic energy + Delta-G solvation = -15567.629151 eV Core-core repulsion = 13015.491900 eV Total energy + Delta-G solvation = -2552.137251 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.58116 -36.84233 -34.80199 -33.85278 -31.64584 -28.28005 -27.28211 -27.26620 -26.09292 -23.10877 -22.22389 -20.20869 -19.21723 -16.70751 -16.40942 -15.69637 -14.87072 -14.74499 -14.16264 -13.89112 -13.85225 -13.35098 -12.91363 -12.35002 -12.26718 -12.21243 -11.65857 -11.43776 -11.35149 -11.07209 -10.96404 -10.85886 -10.83013 -10.51260 -10.18786 -9.79269 -9.39415 -8.54899 -7.91695 -7.41006 -6.01269 -4.17634 2.28424 3.28453 3.33506 3.35884 3.39496 3.43327 4.38217 4.45508 4.90753 4.94177 5.12911 5.23991 5.58096 5.60678 5.75067 5.78402 5.81983 5.87313 5.95038 5.97947 6.06743 6.09377 6.29649 6.32309 6.53252 6.72723 7.04932 7.24786 7.77720 7.96551 8.35191 8.49290 8.78139 8.93693 9.51542 11.03369 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.040361 B = 0.007052 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.576678 B = 3969.687773 C = 4187.642760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.038 3.962 3 C -0.145 4.145 4 C -0.137 4.137 5 C 0.152 3.848 6 N -0.478 5.478 7 C -0.084 4.084 8 C -0.015 4.015 9 C 0.297 3.703 10 H 0.056 0.944 11 N -0.792 5.792 12 C -0.535 4.535 13 H 0.056 0.944 14 C 0.086 3.914 15 N -0.845 5.845 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.284 1.284 19 H -0.274 1.274 20 O -0.201 6.201 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.171 0.829 31 H 0.304 0.696 32 H 0.324 0.676 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.155 2.551 -10.394 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.037 3.963 3 C -0.203 4.203 4 C -0.194 4.194 5 C -0.055 4.055 6 N -0.207 5.207 7 C -0.222 4.222 8 C -0.071 4.071 9 C 0.186 3.814 10 H 0.074 0.926 11 N -0.318 5.318 12 C -0.574 4.574 13 H 0.075 0.925 14 C -0.122 4.122 15 N -0.479 5.479 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.199 1.199 20 O -0.086 6.086 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.189 0.811 31 H 0.114 0.886 32 H 0.136 0.864 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.813 2.474 -10.095 13.003 hybrid contribution 0.641 -0.385 -0.282 0.799 sum -7.172 2.089 -10.376 12.786 Atomic orbital electron populations 1.21858 0.92497 1.03004 1.01983 1.18886 0.95795 0.94276 0.87342 1.21880 1.02117 0.93901 1.02367 1.21865 1.01548 1.00963 0.95060 1.25808 0.96303 0.89588 0.93766 1.70154 1.22940 1.13442 1.14201 1.22734 1.03786 1.00383 0.95319 1.26641 0.99046 0.86973 0.94473 1.17936 0.89624 0.97387 0.76493 0.92617 1.59405 1.24832 1.05709 1.41830 1.20723 0.94770 1.42528 0.99370 0.92527 1.24921 0.98062 0.94392 0.94801 1.70088 1.33760 1.41296 1.02708 0.86614 0.84249 0.79536 0.77657 1.20565 1.20995 1.19855 1.84444 1.54261 1.41206 1.28676 0.92464 0.91585 0.91463 0.91748 0.91578 0.91937 0.91455 0.91608 0.92293 0.81127 0.88559 0.86384 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.46 37.16 0.31 -1.30 16 2 C 0.04 0.54 0.99 -155.66 -0.15 0.38 16 3 C -0.15 -1.80 8.02 37.16 0.30 -1.50 16 4 C -0.14 -1.69 8.46 37.16 0.31 -1.38 16 5 C 0.15 2.89 6.47 -12.95 -0.08 2.81 16 6 N -0.48 -9.71 11.29 -11.10 -0.13 -9.83 16 7 C -0.08 -1.78 11.25 -17.77 -0.20 -1.98 16 8 C -0.01 -0.33 6.32 -35.69 -0.23 -0.56 16 9 C 0.30 7.42 3.13 -70.01 -0.22 7.20 16 10 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 11 N -0.79 -18.12 8.44 -6.65 -0.06 -18.18 16 12 C -0.54 -14.68 8.71 -34.44 -0.30 -14.98 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 14 C 0.09 2.36 5.39 -17.82 -0.10 2.26 16 15 N -0.84 -24.02 12.77 55.43 0.71 -23.31 16 16 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 O -0.20 -4.37 10.17 5.35 0.05 -4.31 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.17 3.33 7.62 -52.48 -0.40 2.94 16 31 H 0.30 6.20 9.06 -39.29 -0.36 5.85 16 32 H 0.32 6.99 8.17 -39.29 -0.32 6.67 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 283.04 15.07 4.27 4.27 Total: -1.00 -30.10 283.04 -5.37 -35.47 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -4.85 Total: 8.86 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -0.35 Total: -9.05 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.53 Total: -51.32 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: 0.05 Total: -4.31 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.10 -5.37 -35.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261240804.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.892 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds