Wall clock time and date at job start Mon Mar 30 2020 02:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47480 * 2 1 4 4 C 1.52998 * 109.47047 * 239.99766 * 2 1 3 5 5 C 1.50703 * 109.46995 * 120.00089 * 2 1 3 6 6 N 1.30254 * 125.61969 * 60.02476 * 5 2 1 7 7 C 1.34472 * 108.70204 * 179.97438 * 6 5 2 8 8 C 1.34333 * 107.67206 * 359.97438 * 7 6 5 9 9 C 1.50697 * 126.44662 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47188 * 200.02813 * 9 8 7 11 11 N 1.46905 * 109.47125 * 320.02591 * 9 8 7 12 12 C 1.50703 * 109.47094 * 80.02518 * 9 8 7 13 13 H 1.08000 * 119.99934 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99701 * 179.97438 * 12 9 8 15 15 N 1.31513 * 120.00608 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 119.99602 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47141 * 90.00118 * 16 14 12 18 18 H 1.48505 * 109.46875 * 210.00255 * 16 14 12 19 19 H 1.48499 * 109.47153 * 329.99723 * 16 14 12 20 20 O 1.33968 * 125.61989 * 240.30297 * 5 2 1 21 21 H 1.09004 * 109.46499 * 299.99998 * 1 2 3 22 22 H 1.08994 * 109.47194 * 59.99475 * 1 2 3 23 23 H 1.08994 * 109.47471 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46860 * 179.97438 * 3 2 1 25 25 H 1.08992 * 109.46818 * 300.00469 * 3 2 1 26 26 H 1.09000 * 109.46772 * 60.00365 * 3 2 1 27 27 H 1.09004 * 109.47789 * 300.00381 * 4 2 1 28 28 H 1.09003 * 109.46691 * 60.00340 * 4 2 1 29 29 H 1.09004 * 109.47452 * 179.97438 * 4 2 1 30 30 H 1.08006 * 126.16703 * 179.97438 * 7 6 5 31 31 H 1.00901 * 110.99869 * 296.04907 * 11 9 8 32 32 H 1.00896 * 110.99543 * 60.00030 * 11 9 8 33 33 H 0.96991 * 120.00497 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.7864 -1.9506 1.5440 7 6 2.4000 -2.2311 2.7072 8 6 3.0394 -1.1202 3.1092 9 6 3.8618 -0.9645 4.3624 10 1 3.9549 0.0936 4.6067 11 7 3.2023 -1.6669 5.4713 12 6 5.2320 -1.5512 4.1402 13 1 5.4824 -1.9923 3.1867 14 6 6.1662 -1.5239 5.1538 15 7 5.8615 -0.9863 6.3147 16 14 7.8649 -2.2506 4.8780 17 1 8.7726 -1.2007 4.3498 18 1 8.3983 -2.7644 6.1652 19 1 7.7741 -3.3644 3.9001 20 8 2.8010 -0.1691 2.1848 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 3.1301 1.4423 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6768 1.9562 0.8900 27 1 1.6766 -1.7490 -1.2493 28 1 1.6766 -0.2074 -2.1392 29 1 3.1300 -0.7209 -1.2495 30 1 2.3820 -3.1788 3.2249 31 1 2.3079 -1.2502 5.6824 32 1 3.1041 -2.6505 5.2689 33 1 6.5189 -0.9668 7.0276 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261240804.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:36 Heat of formation + Delta-G solvation = -17.281290 kcal Electronic energy + Delta-G solvation = -15568.613433 eV Core-core repulsion = 13015.491900 eV Total energy + Delta-G solvation = -2553.121534 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.22256 -38.00699 -36.68019 -35.50232 -33.68735 -29.96632 -28.29213 -28.22374 -28.05791 -24.89339 -23.77078 -21.98607 -20.57615 -18.72966 -17.89454 -17.38370 -16.74870 -16.36652 -15.70304 -15.42202 -14.97973 -14.75300 -14.65634 -14.18872 -13.30399 -13.22636 -13.11495 -12.81438 -12.76788 -12.65386 -12.50077 -12.27833 -12.17039 -11.96178 -11.90848 -11.53616 -11.37708 -10.64716 -9.64797 -9.20711 -8.10182 -6.33973 0.63834 1.41578 1.42735 1.52611 1.76718 1.83896 2.42639 3.05328 3.14772 3.80087 3.90770 3.99694 4.19958 4.22299 4.30143 4.62442 4.70519 4.71911 4.81398 4.88573 4.92245 4.93974 5.06006 5.15574 5.33051 5.33383 5.37119 5.50590 5.63335 5.94743 6.43388 6.82375 6.87403 7.02966 7.38975 8.94109 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.040361 B = 0.007052 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.576678 B = 3969.687773 C = 4187.642760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.030 3.970 3 C -0.142 4.142 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.494 5.494 7 C -0.074 4.074 8 C -0.046 4.046 9 C 0.306 3.694 10 H 0.021 0.979 11 N -0.796 5.796 12 C -0.553 4.553 13 H 0.044 0.956 14 C 0.042 3.958 15 N -0.874 5.874 16 Si 0.956 3.044 17 H -0.275 1.275 18 H -0.277 1.277 19 H -0.273 1.273 20 O -0.217 6.217 21 H 0.050 0.950 22 H 0.104 0.896 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.105 0.895 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.045 0.955 30 H 0.184 0.816 31 H 0.318 0.682 32 H 0.331 0.669 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.693 2.597 -12.159 15.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.029 3.971 3 C -0.200 4.200 4 C -0.190 4.190 5 C -0.040 4.040 6 N -0.223 5.223 7 C -0.212 4.212 8 C -0.103 4.103 9 C 0.194 3.806 10 H 0.039 0.961 11 N -0.324 5.324 12 C -0.591 4.591 13 H 0.062 0.938 14 C -0.163 4.163 15 N -0.508 5.508 16 Si 0.781 3.219 17 H -0.200 1.200 18 H -0.202 1.202 19 H -0.197 1.197 20 O -0.103 6.103 21 H 0.069 0.931 22 H 0.123 0.877 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.124 0.876 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.064 0.936 30 H 0.201 0.799 31 H 0.130 0.870 32 H 0.144 0.856 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.362 2.506 -11.858 14.725 hybrid contribution 0.719 -0.352 0.174 0.820 sum -7.643 2.153 -11.684 14.127 Atomic orbital electron populations 1.21859 0.90411 1.02932 1.03604 1.19390 0.97357 0.94826 0.85538 1.21898 1.01150 0.93057 1.03883 1.21876 1.00748 1.00780 0.95633 1.27170 0.93688 0.89412 0.93778 1.70223 1.23814 1.14248 1.14031 1.22942 1.02585 1.00257 0.95403 1.26127 1.01075 0.88016 0.95035 1.17453 0.89695 0.95316 0.78107 0.96066 1.59195 1.25706 1.06131 1.41370 1.20936 0.96444 1.42764 0.98986 0.93773 1.25641 1.01530 0.94634 0.94485 1.70190 1.35042 1.42198 1.03389 0.85618 0.79817 0.78749 0.77712 1.20046 1.20197 1.19732 1.84428 1.55103 1.41517 1.29247 0.93119 0.87723 0.92378 0.93306 0.87636 0.92867 0.92400 0.87618 0.93593 0.79905 0.87047 0.85553 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 8.46 71.98 0.61 -2.10 16 2 C 0.03 0.78 0.99 -52.93 -0.05 0.73 16 3 C -0.14 -3.21 8.02 71.98 0.58 -2.64 16 4 C -0.13 -2.93 8.46 71.98 0.61 -2.32 16 5 C 0.17 6.24 6.47 88.34 0.57 6.81 16 6 N -0.49 -19.82 11.29 -303.82 -3.43 -23.25 16 7 C -0.07 -3.17 11.25 83.40 0.94 -2.23 16 8 C -0.05 -2.16 6.32 24.79 0.16 -2.00 16 9 C 0.31 15.76 3.13 43.42 0.14 15.90 16 10 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 11 N -0.80 -37.09 8.44 -174.95 -1.48 -38.57 16 12 C -0.55 -30.95 8.71 25.60 0.22 -30.73 16 13 H 0.04 2.52 7.74 -2.91 -0.02 2.50 16 14 C 0.04 2.33 5.39 84.65 0.46 2.79 16 15 N -0.87 -50.22 12.77 21.45 0.27 -49.95 16 16 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 O -0.22 -9.57 10.17 -3.77 -0.04 -9.60 16 21 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 22 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.18 7.11 7.62 -2.91 -0.02 7.09 16 31 H 0.32 13.17 9.06 -89.69 -0.81 12.36 16 32 H 0.33 14.44 8.17 -89.70 -0.73 13.70 16 33 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -65.21 283.04 1.14 -64.07 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -0.43 Total: 27.56 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 4.22 Total: -15.79 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -4.63 Total: -111.77 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.04 Total: -9.60 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -65.21 1.14 -64.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261240804.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.785 kcal (2) G-P(sol) polarization free energy of solvation -65.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds