Wall clock time and date at job start Mon Mar 30 2020 02:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 C 1.53009 * 109.47164 * 240.00592 * 2 1 3 5 5 C 1.50702 * 109.47593 * 120.00342 * 2 1 3 6 6 N 1.30252 * 125.61954 * 60.31186 * 5 2 1 7 7 C 1.34472 * 108.70175 * 180.19176 * 6 5 2 8 8 C 1.50698 * 126.16524 * 179.82711 * 7 6 5 9 9 H 1.09009 * 109.47290 * 144.71840 * 8 7 6 10 10 N 1.46902 * 109.47231 * 24.72053 * 8 7 6 11 11 C 1.50702 * 109.47465 * 264.71469 * 8 7 6 12 12 H 1.08002 * 119.99441 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00075 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00481 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99886 * 179.73007 * 13 11 8 16 16 H 1.48494 * 109.47225 * 180.27306 * 15 13 11 17 17 H 1.48506 * 109.46866 * 300.27330 * 15 13 11 18 18 H 1.48498 * 109.47306 * 60.26614 * 15 13 11 19 19 C 1.34326 * 107.66958 * 359.56554 * 7 6 5 20 20 O 1.33968 * 125.61701 * 240.02869 * 5 2 1 21 21 H 1.08997 * 109.47092 * 299.99179 * 1 2 3 22 22 H 1.08994 * 109.47705 * 59.99864 * 1 2 3 23 23 H 1.09006 * 109.46916 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47322 * 180.02562 * 3 2 1 25 25 H 1.08994 * 109.46995 * 300.00571 * 3 2 1 26 26 H 1.09004 * 109.46713 * 60.00116 * 3 2 1 27 27 H 1.09000 * 109.46497 * 299.99913 * 4 2 1 28 28 H 1.08998 * 109.46717 * 59.99224 * 4 2 1 29 29 H 1.09001 * 109.47025 * 179.97438 * 4 2 1 30 30 H 1.00902 * 110.99590 * 299.99265 * 10 8 7 31 31 H 1.00896 * 111.00313 * 63.95111 * 10 8 7 32 32 H 0.97005 * 119.99656 * 359.72741 * 14 13 11 33 33 H 1.07998 * 126.45041 * 180.23892 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2304 6 7 1.7910 -1.9521 1.5412 7 6 2.3991 -2.2307 2.7077 8 6 2.3739 -3.5530 3.4302 9 1 3.3347 -3.7191 3.9176 10 7 2.1204 -4.6326 2.4668 11 6 1.2806 -3.5381 4.4673 12 1 0.6653 -2.6591 4.5906 13 6 1.0660 -4.6464 5.2587 14 7 1.8149 -5.7170 5.1083 15 14 -0.2843 -4.6252 6.5494 16 1 -0.3052 -5.9260 7.2653 17 1 -0.0250 -3.5306 7.5189 18 1 -1.5960 -4.4018 5.8900 19 6 3.0379 -1.1197 3.1100 20 8 2.8055 -0.1706 2.1820 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4426 -0.0005 25 1 1.6765 1.9563 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6766 -1.7488 -1.2494 28 1 1.6765 -0.2073 -2.1393 29 1 3.1300 -0.7207 -1.2496 30 1 1.2347 -4.5014 2.0015 31 1 2.8728 -4.7051 1.7986 32 1 2.5158 -5.7282 4.4377 33 1 3.6268 -1.0078 4.0084 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261276305.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:37 Heat of formation + Delta-G solvation = -22.794416 kcal Electronic energy + Delta-G solvation = -15645.514820 eV Core-core repulsion = 13092.154220 eV Total energy + Delta-G solvation = -2553.360601 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.26821 -37.98275 -37.37932 -35.09091 -32.99798 -30.56088 -28.29032 -28.27323 -27.57960 -24.68442 -23.99692 -21.95761 -20.45843 -18.99588 -17.95840 -17.52696 -16.54623 -16.16222 -15.95728 -15.54540 -15.01023 -14.95818 -14.47777 -14.05853 -13.64162 -13.26588 -13.12570 -12.76575 -12.68667 -12.59853 -12.38624 -12.24570 -12.00026 -11.96059 -11.89797 -11.45620 -10.81783 -10.52861 -9.63732 -9.42851 -8.43883 -6.30304 0.55771 1.53280 1.61471 1.77707 1.80643 1.81648 2.61660 2.96343 3.27819 3.77163 3.86516 3.92572 4.13040 4.19679 4.33786 4.63186 4.66145 4.68881 4.77430 4.87056 4.89333 4.94424 5.00336 5.09477 5.18718 5.28898 5.34156 5.43542 5.84962 6.10774 6.56554 6.71272 6.87320 6.98397 7.60029 8.92778 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.040132 B = 0.007133 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.522247 B = 3924.616137 C = 4020.441329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.032 3.968 3 C -0.139 4.139 4 C -0.132 4.132 5 C 0.185 3.815 6 N -0.499 5.499 7 C -0.030 4.030 8 C 0.282 3.718 9 H 0.023 0.977 10 N -0.823 5.823 11 C -0.618 4.618 12 H 0.029 0.971 13 C -0.007 4.007 14 N -0.914 5.914 15 Si 1.111 2.889 16 H -0.281 1.281 17 H -0.272 1.272 18 H -0.281 1.281 19 C -0.101 4.101 20 O -0.207 6.207 21 H 0.048 0.952 22 H 0.106 0.894 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.104 0.896 29 H 0.054 0.946 30 H 0.331 0.669 31 H 0.313 0.687 32 H 0.279 0.721 33 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.146 14.101 -11.180 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.030 3.970 3 C -0.196 4.196 4 C -0.190 4.190 5 C -0.022 4.022 6 N -0.229 5.229 7 C -0.151 4.151 8 C 0.171 3.829 9 H 0.041 0.959 10 N -0.350 5.350 11 C -0.656 4.656 12 H 0.047 0.953 13 C -0.211 4.211 14 N -0.549 5.549 15 Si 0.934 3.066 16 H -0.206 1.206 17 H -0.197 1.197 18 H -0.207 1.207 19 C -0.171 4.171 20 O -0.094 6.094 21 H 0.067 0.933 22 H 0.125 0.875 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.121 0.879 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.123 0.877 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.858 12.312 -9.735 15.719 hybrid contribution 1.364 1.714 -1.070 2.438 sum 0.506 14.025 -10.805 17.712 Atomic orbital electron populations 1.21881 0.91285 1.02495 1.03567 1.19403 0.96759 0.95371 0.85431 1.21886 1.01584 0.92163 1.03992 1.21864 1.01088 1.00440 0.95562 1.27230 0.92819 0.88792 0.93385 1.70131 1.23355 1.14881 1.14535 1.23367 0.97690 1.00729 0.93354 1.17497 0.96231 0.79999 0.89183 0.95901 1.59243 1.05896 1.48832 1.21011 1.21880 1.20320 1.02450 1.20994 0.95278 1.26994 1.01748 0.91702 1.00659 1.70675 1.19888 1.29505 1.34791 0.83020 0.73217 0.76387 0.73963 1.20581 1.19728 1.20675 1.25036 1.07984 0.87285 0.96765 1.84357 1.55334 1.40751 1.28991 0.93276 0.87521 0.93371 0.92216 0.87883 0.92633 0.93201 0.87692 0.92716 0.85699 0.87629 0.91000 0.75370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.46 71.98 0.61 -2.44 16 2 C 0.03 0.77 0.99 -52.92 -0.05 0.72 16 3 C -0.14 -2.55 8.02 71.98 0.58 -1.97 16 4 C -0.13 -2.75 8.46 71.99 0.61 -2.14 16 5 C 0.19 6.59 6.47 88.34 0.57 7.16 16 6 N -0.50 -21.41 10.92 -291.99 -3.19 -24.60 16 7 C -0.03 -1.42 5.97 41.26 0.25 -1.17 16 8 C 0.28 14.88 2.69 43.42 0.12 15.00 16 9 H 0.02 1.29 8.01 -2.38 -0.02 1.27 16 10 N -0.82 -41.56 7.68 -174.94 -1.34 -42.90 16 11 C -0.62 -36.12 8.71 25.60 0.22 -35.90 16 12 H 0.03 1.74 7.74 -2.91 -0.02 1.72 16 13 C -0.01 -0.41 5.39 84.65 0.46 0.05 16 14 N -0.91 -56.59 13.51 21.45 0.29 -56.30 16 15 Si 1.11 51.81 29.90 68.60 2.05 53.86 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 C -0.10 -4.07 12.08 66.93 0.81 -3.26 16 20 O -0.21 -7.61 10.17 -3.79 -0.04 -7.65 16 21 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.33 16.99 8.77 -89.69 -0.79 16.21 16 31 H 0.31 14.23 9.06 -89.70 -0.81 13.42 16 32 H 0.28 17.43 6.39 -92.70 -0.59 16.84 16 33 H 0.23 7.82 8.06 -2.91 -0.02 7.79 16 Total: -1.00 -69.93 282.05 1.62 -68.30 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -0.31 Total: 33.24 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 4.16 Total: -23.95 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -4.24 Total: -123.80 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.04 Total: -7.65 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.05 Total: 53.86 kcal Total: -69.93 1.62 -68.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261276305.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.508 kcal (2) G-P(sol) polarization free energy of solvation -69.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds