Wall clock time and date at job start Mon Mar 30 2020 02:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53010 * 109.47099 * 2 1 4 4 C 1.52997 * 109.47259 * 240.00252 * 2 1 3 5 5 C 1.50702 * 109.47313 * 119.99754 * 2 1 3 6 6 N 1.30250 * 125.61501 * 60.00238 * 5 2 1 7 7 C 1.34477 * 108.70155 * 179.97438 * 6 5 2 8 8 C 1.50700 * 126.16833 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47087 * 25.00412 * 8 7 6 10 10 N 1.46905 * 109.47121 * 145.00215 * 8 7 6 11 11 C 1.50698 * 109.47079 * 264.99929 * 8 7 6 12 12 H 1.08003 * 120.00217 * 0.02562 * 11 8 7 13 13 C 1.37879 * 120.00029 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99980 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00103 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.46954 * 90.00163 * 15 13 11 17 17 H 1.48504 * 109.46853 * 210.00258 * 15 13 11 18 18 H 1.48500 * 109.47066 * 330.00055 * 15 13 11 19 19 C 1.34334 * 107.66564 * 0.26254 * 7 6 5 20 20 O 1.33963 * 125.61962 * 239.95830 * 5 2 1 21 21 H 1.09004 * 109.47483 * 299.99740 * 1 2 3 22 22 H 1.08999 * 109.47393 * 60.00388 * 1 2 3 23 23 H 1.09007 * 109.47288 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46872 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46681 * 300.00048 * 3 2 1 26 26 H 1.09004 * 109.46740 * 59.99805 * 3 2 1 27 27 H 1.09004 * 109.47117 * 299.99680 * 4 2 1 28 28 H 1.08997 * 109.47773 * 59.99810 * 4 2 1 29 29 H 1.09007 * 109.47179 * 179.97438 * 4 2 1 30 30 H 1.00901 * 110.99869 * 60.00289 * 10 8 7 31 31 H 1.00896 * 110.99543 * 183.95412 * 10 8 7 32 32 H 0.96999 * 120.00171 * 179.97438 * 14 13 11 33 33 H 1.08002 * 126.43780 * 179.73385 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.7861 -1.9503 1.5442 7 6 2.3998 -2.2309 2.7073 8 6 2.3745 -3.5531 3.4300 9 1 2.1849 -4.3541 2.7154 10 7 3.6700 -3.7779 4.0852 11 6 1.2825 -3.5372 4.4684 12 1 0.6680 -2.6577 4.5924 13 6 1.0672 -4.6457 5.2595 14 7 1.8152 -5.7168 5.1082 15 14 -0.2868 -4.6263 6.5462 16 1 -1.5506 -5.1197 5.9423 17 1 0.0958 -5.5048 7.6807 18 1 -0.4820 -3.2389 7.0384 19 6 3.0344 -1.1182 3.1122 20 8 2.8064 -0.1708 2.1814 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6765 1.9564 0.8900 27 1 1.6767 -1.7489 -1.2493 28 1 1.6767 -0.2074 -2.1393 29 1 3.1300 -0.7208 -1.2495 30 1 3.8690 -3.0481 4.7529 31 1 3.7010 -4.6865 4.5227 32 1 1.6641 -6.4966 5.6650 33 1 3.6196 -1.0052 4.0129 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261276307.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:39 Heat of formation + Delta-G solvation = -22.421994 kcal Electronic energy + Delta-G solvation = -15564.774914 eV Core-core repulsion = 13011.430463 eV Total energy + Delta-G solvation = -2553.344451 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.15200 -37.91092 -37.17203 -35.14351 -33.25335 -29.95908 -28.30497 -28.20990 -28.02564 -24.94182 -24.00805 -21.75303 -20.12550 -18.68294 -18.13590 -17.38038 -16.76502 -16.25002 -15.90752 -15.12733 -14.95442 -14.80448 -14.52027 -14.11944 -13.27775 -13.19799 -13.05246 -12.92552 -12.82632 -12.61977 -12.46866 -12.22095 -12.05828 -12.00795 -11.89349 -11.63811 -11.26862 -10.75938 -9.58217 -9.28220 -8.19841 -6.45046 0.69209 1.34853 1.36169 1.46585 1.90560 1.91942 2.34927 2.95974 3.10934 3.85034 3.93680 3.99485 4.26319 4.33651 4.63773 4.72540 4.75077 4.76622 4.83954 4.93827 4.95659 5.05991 5.08890 5.19644 5.35637 5.41187 5.49123 5.56096 5.60112 5.94586 6.54700 6.78041 7.01502 7.04241 7.31047 8.77159 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039172 B = 0.007133 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.618475 B = 3924.659969 C = 4163.144910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.031 3.969 3 C -0.138 4.138 4 C -0.134 4.134 5 C 0.184 3.816 6 N -0.512 5.512 7 C 0.008 3.992 8 C 0.288 3.712 9 H 0.007 0.993 10 N -0.837 5.837 11 C -0.561 4.561 12 H 0.041 0.959 13 C 0.025 3.975 14 N -0.914 5.914 15 Si 0.965 3.035 16 H -0.278 1.278 17 H -0.273 1.273 18 H -0.271 1.271 19 C -0.089 4.089 20 O -0.207 6.207 21 H 0.050 0.950 22 H 0.106 0.894 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.106 0.894 29 H 0.054 0.946 30 H 0.322 0.678 31 H 0.352 0.648 32 H 0.271 0.729 33 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 13.067 -8.300 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.030 3.970 3 C -0.195 4.195 4 C -0.191 4.191 5 C -0.024 4.024 6 N -0.242 5.242 7 C -0.111 4.111 8 C 0.177 3.823 9 H 0.025 0.975 10 N -0.367 5.367 11 C -0.601 4.601 12 H 0.059 0.941 13 C -0.176 4.176 14 N -0.553 5.553 15 Si 0.790 3.210 16 H -0.204 1.204 17 H -0.198 1.198 18 H -0.196 1.196 19 C -0.159 4.159 20 O -0.095 6.095 21 H 0.069 0.931 22 H 0.125 0.875 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.121 0.879 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.124 0.876 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.167 0.833 32 H 0.080 0.920 33 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.020 12.560 -9.333 15.648 hybrid contribution -0.773 -0.376 2.327 2.481 sum -0.752 12.185 -7.006 14.075 Atomic orbital electron populations 1.21884 0.91288 1.02442 1.03628 1.19397 0.96799 0.95423 0.85381 1.21880 1.01609 0.92008 1.04014 1.21876 1.01145 1.00383 0.95711 1.27167 0.92813 0.88780 0.93633 1.70190 1.23991 1.15036 1.14970 1.22137 0.97588 0.98818 0.92573 1.16919 0.87948 0.86289 0.91109 0.97521 1.59351 1.31810 1.08478 1.37102 1.21885 1.18431 1.00393 1.19343 0.94072 1.25754 0.98361 0.94398 0.99090 1.69830 1.40402 1.04445 1.40620 0.85463 0.79006 0.78157 0.78421 1.20433 1.19763 1.19593 1.24822 1.07436 0.86898 0.96710 1.84346 1.55392 1.40833 1.28896 0.93067 0.87504 0.93511 0.92207 0.87906 0.92466 0.93439 0.87585 0.92723 0.86816 0.83268 0.91950 0.75274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.46 71.98 0.61 -2.59 16 2 C 0.03 0.81 0.99 -52.93 -0.05 0.76 16 3 C -0.14 -2.65 8.02 71.99 0.58 -2.07 16 4 C -0.13 -3.05 8.46 71.98 0.61 -2.44 16 5 C 0.18 6.92 6.47 88.34 0.57 7.49 16 6 N -0.51 -23.88 11.29 -291.99 -3.30 -27.18 16 7 C 0.01 0.40 6.09 41.26 0.25 0.65 16 8 C 0.29 15.77 3.23 43.42 0.14 15.91 16 9 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 10 N -0.84 -41.35 9.05 -174.94 -1.58 -42.93 16 11 C -0.56 -32.03 8.71 25.60 0.22 -31.80 16 12 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 13 C 0.02 1.36 5.38 84.65 0.46 1.82 16 14 N -0.91 -51.61 11.54 21.45 0.25 -51.36 16 15 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 19 C -0.09 -3.69 11.49 66.93 0.77 -2.92 16 20 O -0.21 -7.88 10.17 -3.70 -0.04 -7.91 16 21 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 22 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.32 14.39 8.06 -89.69 -0.72 13.67 16 31 H 0.35 18.45 7.08 -89.70 -0.63 17.81 16 32 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.23 7.98 7.50 -2.91 -0.02 7.96 16 Total: -1.00 -66.71 280.31 1.26 -65.45 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -0.25 Total: 33.36 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 4.15 Total: -15.20 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -4.63 Total: -121.47 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.04 Total: -7.91 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -66.71 1.26 -65.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261276307.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.027 kcal (2) G-P(sol) polarization free energy of solvation -66.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds