Wall clock time and date at job start Mon Mar 30 2020 02:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53005 * 109.46920 * 2 1 4 4 C 1.50695 * 109.47172 * 120.00176 * 2 1 3 5 5 N 1.30253 * 125.62093 * 120.00280 * 4 2 1 6 6 C 1.34472 * 108.70349 * 179.97438 * 5 4 2 7 7 C 1.50706 * 126.16433 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47046 * 25.00786 * 7 6 5 9 9 C 1.50692 * 109.47425 * 265.00579 * 7 6 5 10 10 H 1.08001 * 120.00184 * 354.54871 * 9 7 6 11 11 C 1.37872 * 120.00116 * 174.55675 * 9 7 6 12 12 N 1.31515 * 120.00116 * 350.61235 * 11 9 7 13 13 Si 1.86808 * 120.00267 * 170.61837 * 11 9 7 14 14 H 1.48497 * 109.47009 * 89.99762 * 13 11 9 15 15 H 1.48497 * 109.47030 * 209.99894 * 13 11 9 16 16 H 1.48506 * 109.46925 * 329.99580 * 13 11 9 17 17 C 1.53005 * 109.46569 * 145.00441 * 7 6 5 18 18 N 1.46897 * 109.47154 * 296.85960 * 17 7 6 19 19 C 1.34328 * 107.66928 * 0.02562 * 6 5 4 20 20 O 1.33967 * 125.62167 * 299.97343 * 4 2 1 21 21 H 1.08998 * 109.46322 * 299.99504 * 1 2 3 22 22 H 1.08997 * 109.47266 * 60.00117 * 1 2 3 23 23 H 1.08997 * 109.46713 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46930 * 240.00481 * 2 1 3 25 25 H 1.08997 * 109.47055 * 300.00012 * 3 2 1 26 26 H 1.09000 * 109.47082 * 60.00093 * 3 2 1 27 27 H 1.09002 * 109.46756 * 180.02562 * 3 2 1 28 28 H 0.97003 * 120.00214 * 180.02562 * 12 11 9 29 29 H 1.09000 * 109.47058 * 56.86365 * 17 7 6 30 30 H 1.09000 * 109.46767 * 176.85955 * 17 7 6 31 31 H 1.00903 * 111.00134 * 184.54432 * 18 17 7 32 32 H 1.00903 * 111.00250 * 308.49598 * 18 17 7 33 33 H 1.08004 * 126.44414 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7845 -1.7739 1.2385 6 6 3.0293 -2.1192 2.5148 7 6 3.8574 -3.2909 2.9759 8 1 4.5759 -3.5557 2.2002 9 6 2.9558 -4.4672 3.2481 10 1 1.8838 -4.3514 3.1873 11 6 3.4994 -5.6913 3.5751 12 7 4.7961 -5.8841 3.4704 13 14 2.3941 -7.0763 4.1665 14 1 1.9309 -7.8719 3.0013 15 1 3.1526 -7.9530 5.0945 16 1 1.2200 -6.5049 4.8739 17 6 4.6052 -2.9142 4.2566 18 7 5.5393 -1.8165 3.9733 19 6 2.4018 -1.2323 3.3047 20 8 1.7796 -0.3520 2.4962 21 1 -0.3632 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8901 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 3.1301 1.4425 -0.0005 28 1 5.1786 -6.7455 3.7001 29 1 3.8897 -2.5960 5.0148 30 1 5.1602 -3.7788 4.6208 31 1 6.0982 -1.5988 4.7847 32 1 6.1234 -2.0343 3.1799 33 1 2.3977 -1.2253 4.3847 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279443.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:34 Heat of formation + Delta-G solvation = 1.379078 kcal Electronic energy + Delta-G solvation = -15518.518503 eV Core-core repulsion = 12966.206143 eV Total energy + Delta-G solvation = -2552.312359 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.40475 -35.81881 -35.23157 -33.36097 -32.24376 -29.62250 -27.15616 -27.14383 -23.91903 -23.02463 -21.92165 -20.38815 -18.70415 -16.56990 -16.45147 -15.60576 -15.00985 -14.67433 -14.47090 -14.16094 -13.55367 -13.15750 -13.02856 -12.25193 -12.18312 -12.11676 -11.67710 -11.30366 -11.20375 -10.99814 -10.91839 -10.72991 -10.26137 -10.11695 -9.88351 -9.42522 -9.26812 -8.46754 -7.71019 -7.67349 -6.11245 -4.13373 2.38773 3.27269 3.33852 3.37810 3.53292 3.77357 4.40005 4.57847 5.00570 5.16447 5.19110 5.39310 5.62008 5.65234 5.81064 5.82484 5.91817 6.09641 6.14703 6.26060 6.29781 6.53055 6.73595 6.80287 6.88525 7.27705 7.45284 7.73187 7.86018 8.00518 8.27106 8.35427 8.76673 8.89393 9.49691 10.97068 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.007840 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.502908 B = 3570.664007 C = 4091.516924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.009 3.991 3 C -0.146 4.146 4 C 0.161 3.839 5 N -0.477 5.477 6 C 0.057 3.943 7 C 0.119 3.881 8 H 0.049 0.951 9 C -0.508 4.508 10 H 0.057 0.943 11 C 0.065 3.935 12 N -0.888 5.888 13 Si 0.893 3.107 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.071 3.929 18 N -0.857 5.857 19 C -0.097 4.097 20 O -0.215 6.215 21 H 0.060 0.940 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.262 0.738 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.321 0.679 32 H 0.333 0.667 33 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.140 10.710 -2.822 11.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.011 4.011 3 C -0.204 4.204 4 C -0.045 4.045 5 N -0.207 5.207 6 C -0.063 4.063 7 C 0.100 3.900 8 H 0.067 0.933 9 C -0.547 4.547 10 H 0.075 0.925 11 C -0.137 4.137 12 N -0.526 5.526 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.060 4.060 18 N -0.384 5.384 19 C -0.166 4.166 20 O -0.103 6.103 21 H 0.079 0.921 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.124 0.876 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.130 0.870 32 H 0.144 0.856 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.485 10.734 -3.439 12.131 hybrid contribution 0.049 -1.347 1.351 1.909 sum -4.436 9.387 -2.088 10.590 Atomic orbital electron populations 1.21864 0.93597 1.02720 1.02331 1.19513 0.95951 0.95152 0.90438 1.21856 1.01780 0.94443 1.02326 1.25922 0.99162 0.94622 0.84802 1.70354 1.14764 1.11407 1.24173 1.22244 0.99207 0.98294 0.86561 1.17256 0.92820 0.86878 0.93064 0.93319 1.20955 0.92838 0.93382 1.47542 0.92495 1.24949 0.95126 0.98258 0.95333 1.69958 1.10821 1.24222 1.47635 0.86569 0.80691 0.81837 0.78861 1.20558 1.21075 1.19755 1.21955 0.94268 0.90827 0.98922 1.59027 1.24377 1.45845 1.09184 1.24483 1.02289 0.93046 0.96732 1.84263 1.59853 1.48581 1.17565 0.92109 0.91556 0.92023 0.87633 0.91596 0.92101 0.92062 0.92806 0.93463 0.93177 0.86955 0.85560 0.78061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.18 37.16 0.34 -1.40 16 2 C 0.01 0.12 3.39 -91.77 -0.31 -0.19 16 3 C -0.15 -1.69 9.18 37.16 0.34 -1.35 16 4 C 0.16 3.14 6.85 -12.95 -0.09 3.05 16 5 N -0.48 -11.10 11.29 -7.36 -0.08 -11.18 16 6 C 0.06 1.35 5.66 -82.81 -0.47 0.88 16 7 C 0.12 3.07 2.20 -92.92 -0.20 2.87 16 8 H 0.05 1.41 8.09 -51.93 -0.42 0.99 16 9 C -0.51 -14.16 8.47 -34.45 -0.29 -14.45 16 10 H 0.06 1.62 7.76 -52.49 -0.41 1.21 16 11 C 0.07 1.80 5.18 -17.82 -0.09 1.71 16 12 N -0.89 -25.13 12.15 55.43 0.67 -24.45 16 13 Si 0.89 21.23 29.55 -169.99 -5.02 16.21 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 C 0.07 1.62 5.74 -3.82 -0.02 1.60 16 18 N -0.86 -16.75 9.32 -10.37 -0.10 -16.84 16 19 C -0.10 -2.06 11.33 29.35 0.33 -1.73 16 20 O -0.22 -4.29 10.77 5.38 0.06 -4.23 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.05 1.04 7.13 -51.93 -0.37 0.67 16 30 H 0.05 1.26 6.83 -51.93 -0.35 0.90 16 31 H 0.32 5.37 9.08 -39.29 -0.36 5.01 16 32 H 0.33 6.57 8.93 -39.29 -0.35 6.22 16 33 H 0.20 3.80 7.30 -52.48 -0.38 3.42 16 LS Contribution 281.98 15.07 4.25 4.25 Total: -1.00 -30.60 281.98 -5.42 -36.02 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -4.74 Total: 9.24 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -0.46 Total: -9.01 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.49 Total: -52.48 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: 0.06 Total: -4.23 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.60 -5.42 -36.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279443.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.404 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds