Wall clock time and date at job start Mon Mar 30 2020 02:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53005 * 109.46920 * 2 1 4 4 C 1.50695 * 109.47172 * 120.00176 * 2 1 3 5 5 N 1.30253 * 125.62093 * 120.00280 * 4 2 1 6 6 C 1.34472 * 108.70349 * 179.97438 * 5 4 2 7 7 C 1.50706 * 126.16433 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47046 * 25.00786 * 7 6 5 9 9 C 1.50692 * 109.47425 * 265.00579 * 7 6 5 10 10 H 1.08001 * 120.00184 * 354.54871 * 9 7 6 11 11 C 1.37872 * 120.00116 * 174.55675 * 9 7 6 12 12 N 1.31515 * 120.00116 * 350.61235 * 11 9 7 13 13 Si 1.86808 * 120.00267 * 170.61837 * 11 9 7 14 14 H 1.48497 * 109.47009 * 89.99762 * 13 11 9 15 15 H 1.48497 * 109.47030 * 209.99894 * 13 11 9 16 16 H 1.48506 * 109.46925 * 329.99580 * 13 11 9 17 17 C 1.53005 * 109.46569 * 145.00441 * 7 6 5 18 18 N 1.46897 * 109.47154 * 296.85960 * 17 7 6 19 19 C 1.34328 * 107.66928 * 0.02562 * 6 5 4 20 20 O 1.33967 * 125.62167 * 299.97343 * 4 2 1 21 21 H 1.08998 * 109.46322 * 299.99504 * 1 2 3 22 22 H 1.08997 * 109.47266 * 60.00117 * 1 2 3 23 23 H 1.08997 * 109.46713 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46930 * 240.00481 * 2 1 3 25 25 H 1.08997 * 109.47055 * 300.00012 * 3 2 1 26 26 H 1.09000 * 109.47082 * 60.00093 * 3 2 1 27 27 H 1.09002 * 109.46756 * 180.02562 * 3 2 1 28 28 H 0.97003 * 120.00214 * 180.02562 * 12 11 9 29 29 H 1.09000 * 109.47058 * 56.86365 * 17 7 6 30 30 H 1.09000 * 109.46767 * 176.85955 * 17 7 6 31 31 H 1.00903 * 111.00134 * 184.54432 * 18 17 7 32 32 H 1.00903 * 111.00250 * 308.49598 * 18 17 7 33 33 H 1.08004 * 126.44414 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7845 -1.7739 1.2385 6 6 3.0293 -2.1192 2.5148 7 6 3.8574 -3.2909 2.9759 8 1 4.5759 -3.5557 2.2002 9 6 2.9558 -4.4672 3.2481 10 1 1.8838 -4.3514 3.1873 11 6 3.4994 -5.6913 3.5751 12 7 4.7961 -5.8841 3.4704 13 14 2.3941 -7.0763 4.1665 14 1 1.9309 -7.8719 3.0013 15 1 3.1526 -7.9530 5.0945 16 1 1.2200 -6.5049 4.8739 17 6 4.6052 -2.9142 4.2566 18 7 5.5393 -1.8165 3.9733 19 6 2.4018 -1.2323 3.3047 20 8 1.7796 -0.3520 2.4962 21 1 -0.3632 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8901 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 3.1301 1.4425 -0.0005 28 1 5.1786 -6.7455 3.7001 29 1 3.8897 -2.5960 5.0148 30 1 5.1602 -3.7788 4.6208 31 1 6.0982 -1.5988 4.7847 32 1 6.1234 -2.0343 3.1799 33 1 2.3977 -1.2253 4.3847 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279443.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:34 Heat of formation + Delta-G solvation = -22.458875 kcal Electronic energy + Delta-G solvation = -15519.552194 eV Core-core repulsion = 12966.206143 eV Total energy + Delta-G solvation = -2553.346051 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.04606 -37.59722 -36.44296 -35.07468 -34.22892 -31.39069 -28.94675 -28.05771 -25.91907 -24.48722 -23.59876 -21.98031 -20.32381 -18.60754 -18.03726 -17.26160 -16.74543 -16.26847 -16.05524 -15.55509 -15.14689 -14.85418 -14.09842 -14.01724 -13.98682 -13.43313 -13.01555 -12.89991 -12.73096 -12.46931 -12.23971 -12.06136 -12.00786 -11.88886 -11.81770 -11.23347 -11.20221 -10.57228 -9.42784 -9.38182 -8.21338 -6.32165 0.79105 1.38541 1.39343 1.50622 2.02191 2.03577 2.41666 3.06066 3.19366 3.95046 3.97467 4.14209 4.21461 4.42071 4.47372 4.67232 4.79658 4.86509 4.90699 4.93364 4.98680 5.12757 5.17946 5.33715 5.34727 5.38702 5.62115 5.74856 5.76438 6.12339 6.39474 6.67276 6.81740 7.09803 7.34539 8.85876 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.007840 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.502908 B = 3570.664007 C = 4091.516924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.004 3.996 3 C -0.139 4.139 4 C 0.178 3.822 5 N -0.524 5.524 6 C 0.025 3.975 7 C 0.125 3.875 8 H 0.003 0.997 9 C -0.530 4.530 10 H 0.044 0.956 11 C 0.022 3.978 12 N -0.914 5.914 13 Si 0.956 3.044 14 H -0.279 1.279 15 H -0.275 1.275 16 H -0.266 1.266 17 C 0.088 3.912 18 N -0.847 5.847 19 C -0.091 4.091 20 O -0.210 6.210 21 H 0.061 0.939 22 H 0.103 0.897 23 H 0.045 0.955 24 H 0.109 0.891 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.265 0.735 29 H 0.057 0.943 30 H 0.024 0.976 31 H 0.340 0.660 32 H 0.332 0.668 33 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.452 12.019 -2.832 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.016 4.016 3 C -0.197 4.197 4 C -0.029 4.029 5 N -0.255 5.255 6 C -0.094 4.094 7 C 0.105 3.895 8 H 0.021 0.979 9 C -0.569 4.569 10 H 0.063 0.937 11 C -0.178 4.178 12 N -0.552 5.552 13 Si 0.781 3.219 14 H -0.205 1.205 15 H -0.200 1.200 16 H -0.191 1.191 17 C -0.043 4.043 18 N -0.375 5.375 19 C -0.159 4.159 20 O -0.097 6.097 21 H 0.080 0.920 22 H 0.122 0.878 23 H 0.064 0.936 24 H 0.127 0.873 25 H 0.121 0.879 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -5.782 12.052 -3.439 13.802 hybrid contribution 0.460 -1.689 1.258 2.156 sum -5.321 10.364 -2.180 11.852 Atomic orbital electron populations 1.21858 0.91523 1.02314 1.04235 1.19940 0.97579 0.96221 0.87832 1.21841 1.01053 0.92650 1.04171 1.27094 0.96670 0.93221 0.85912 1.70309 1.17136 1.13669 1.24344 1.22046 1.00814 0.98878 0.87623 1.17029 0.92076 0.87502 0.92843 0.97877 1.21173 0.92534 0.94867 1.48299 0.93735 1.25696 0.96465 1.00475 0.95132 1.70063 1.12264 1.24908 1.47953 0.85587 0.79093 0.78826 0.78406 1.20471 1.20011 1.19055 1.21605 0.94459 0.90725 0.97519 1.58918 1.24504 1.44036 1.10074 1.24715 1.01396 0.92310 0.97523 1.84294 1.59573 1.48115 1.17749 0.92037 0.87839 0.93583 0.87264 0.87949 0.92064 0.93211 0.92573 0.92471 0.95802 0.84764 0.85663 0.75996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.18 71.99 0.66 -2.30 16 2 C 0.00 0.09 3.39 -11.54 -0.04 0.05 16 3 C -0.14 -2.81 9.18 71.98 0.66 -2.15 16 4 C 0.18 6.79 6.85 88.34 0.61 7.40 16 5 N -0.52 -24.81 11.29 -291.99 -3.30 -28.11 16 6 C 0.02 1.21 5.66 41.26 0.23 1.45 16 7 C 0.13 6.65 2.20 -12.28 -0.03 6.62 16 8 H 0.00 0.19 8.09 -2.39 -0.02 0.17 16 9 C -0.53 -30.30 8.47 25.60 0.22 -30.08 16 10 H 0.04 2.59 7.76 -2.91 -0.02 2.56 16 11 C 0.02 1.24 5.18 84.65 0.44 1.68 16 12 N -0.91 -52.77 12.15 21.45 0.26 -52.51 16 13 Si 0.96 43.79 29.55 68.60 2.03 45.82 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 15 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 C 0.09 4.09 5.74 86.31 0.49 4.58 16 18 N -0.85 -32.97 9.32 -186.72 -1.74 -34.71 16 19 C -0.09 -3.80 11.33 66.93 0.76 -3.04 16 20 O -0.21 -8.10 10.77 -3.68 -0.04 -8.14 16 21 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.11 2.77 8.14 -2.38 -0.02 2.75 16 25 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.06 2.51 7.13 -2.39 -0.02 2.49 16 30 H 0.02 1.22 6.83 -2.39 -0.02 1.21 16 31 H 0.34 11.04 9.08 -89.69 -0.81 10.22 16 32 H 0.33 13.30 8.93 -89.69 -0.80 12.49 16 33 H 0.22 8.10 7.30 -2.91 -0.02 8.07 16 Total: -1.00 -67.55 281.98 0.71 -66.83 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: -0.50 Total: 26.61 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 4.00 Total: -15.79 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -4.78 Total: -115.33 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.04 Total: -8.14 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -67.55 0.71 -66.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279443.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.373 kcal (2) G-P(sol) polarization free energy of solvation -67.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds