Wall clock time and date at job start Mon Mar 30 2020 02:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.09003 * 109.47186 * 305.69165 * 3 2 1 5 5 C 1.50702 * 109.47283 * 185.68868 * 3 2 1 6 6 H 1.08001 * 120.00022 * 245.59697 * 5 3 2 7 7 C 1.37878 * 119.99604 * 65.59793 * 5 3 2 8 8 N 1.31518 * 119.99537 * 196.99481 * 7 5 3 9 9 Si 1.86792 * 120.00341 * 16.98893 * 7 5 3 10 10 H 1.48500 * 109.47169 * 180.02562 * 9 7 5 11 11 H 1.48494 * 109.47184 * 300.00125 * 9 7 5 12 12 H 1.48500 * 109.47348 * 60.00257 * 9 7 5 13 13 C 1.50704 * 109.47174 * 65.68871 * 3 2 1 14 14 C 1.35274 * 126.06188 * 60.02538 * 13 3 2 15 15 N 1.34954 * 107.82805 * 179.97438 * 14 13 3 16 16 C 1.46501 * 125.98759 * 179.97438 * 15 14 13 17 17 N 1.40076 * 108.02335 * 0.02562 * 15 14 13 18 18 C 1.31105 * 108.18437 * 359.73931 * 17 15 14 19 19 O 1.35986 * 125.95688 * 180.27131 * 18 17 15 20 20 C 1.42906 * 117.00129 * 0.15627 * 19 18 17 21 21 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 22 22 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 23 23 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 25 25 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 26 26 H 0.97003 * 119.99875 * 354.53510 * 8 7 5 27 27 H 1.08003 * 126.08412 * 0.02562 * 14 13 3 28 28 H 1.09006 * 109.46844 * 89.99966 * 16 15 14 29 29 H 1.08994 * 109.47398 * 209.99981 * 16 15 14 30 30 H 1.09003 * 109.47379 * 330.00582 * 16 15 14 31 31 H 1.08997 * 109.46994 * 180.02562 * 20 19 18 32 32 H 1.08999 * 109.46969 * 300.00008 * 20 19 18 33 33 H 1.09000 * 109.46678 * 59.99615 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5958 1.9850 -0.8347 5 6 3.5403 1.4449 -0.1408 6 1 4.1582 1.8038 0.6690 7 6 4.1243 0.9889 -1.3036 8 7 5.4011 0.6738 -1.3185 9 14 3.1020 0.8184 -2.8577 10 1 3.9581 0.3116 -3.9602 11 1 1.9901 -0.1358 -2.6165 12 1 2.5450 2.1432 -3.2317 13 6 1.6559 2.1111 1.2948 14 6 2.0245 1.7160 2.5350 15 7 1.4776 2.5740 3.4216 16 6 1.6221 2.5149 4.8782 17 7 0.7466 3.5303 2.7050 18 6 0.8570 3.2568 1.4276 19 8 0.2935 3.9596 0.4089 20 6 -0.4878 5.1024 0.7635 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.9499 0.8365 -0.5355 27 1 2.6464 0.8658 2.7731 28 1 2.4945 3.0944 5.1806 29 1 0.7303 2.9286 5.3489 30 1 1.7492 1.4779 5.1890 31 1 -0.8785 5.5700 -0.1402 32 1 -1.3170 4.7925 1.3994 33 1 0.1359 5.8160 1.3019 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261287732.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:29 Heat of formation + Delta-G solvation = 11.216120 kcal Electronic energy + Delta-G solvation = -15855.199107 eV Core-core repulsion = 13303.313314 eV Total energy + Delta-G solvation = -2551.885793 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.24524 -39.09495 -37.03954 -34.10248 -33.29031 -31.03079 -29.03155 -28.60322 -26.50233 -24.17660 -22.88880 -21.81951 -20.69762 -19.31384 -18.36118 -17.09294 -17.00483 -15.94746 -15.88435 -15.71051 -15.17182 -14.74883 -14.28612 -14.19659 -13.87725 -13.43563 -13.34028 -12.82193 -12.71705 -12.51134 -12.24996 -12.14666 -12.00900 -11.65361 -11.39435 -11.15634 -10.79236 -10.29795 -9.86510 -9.05549 -8.52478 -6.23044 0.95314 1.50782 1.53628 1.58530 1.77679 1.96051 2.52718 2.54570 3.16741 3.73277 4.08612 4.35273 4.37041 4.38029 4.47566 4.54424 4.56534 4.66221 4.69457 4.70400 4.79439 5.02043 5.15059 5.21752 5.32881 5.42955 5.61231 5.82857 6.13287 6.17930 6.24659 6.42819 6.70548 6.80931 7.51635 8.75274 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.025779 B = 0.010221 C = 0.009102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.897257 B = 2738.787925 C = 3075.398326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C 0.093 3.907 4 H 0.016 0.984 5 C -0.580 4.580 6 H 0.018 0.982 7 C -0.020 4.020 8 N -0.944 5.944 9 Si 1.076 2.924 10 H -0.291 1.291 11 H -0.237 1.237 12 H -0.275 1.275 13 C -0.213 4.213 14 C 0.076 3.924 15 N -0.373 5.373 16 C 0.102 3.898 17 N -0.366 5.366 18 C 0.240 3.760 19 O -0.310 6.310 20 C 0.032 3.968 21 H 0.042 0.958 22 H 0.045 0.955 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.250 0.750 27 H 0.187 0.813 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.059 0.941 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.218 2.576 9.016 15.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C 0.073 3.927 4 H 0.035 0.965 5 C -0.618 4.618 6 H 0.037 0.963 7 C -0.217 4.217 8 N -0.582 5.582 9 Si 0.898 3.102 10 H -0.217 1.217 11 H -0.161 1.161 12 H -0.200 1.200 13 C -0.224 4.224 14 C -0.070 4.070 15 N -0.160 5.160 16 C -0.038 4.038 17 N -0.207 5.207 18 C 0.037 3.963 19 O -0.215 6.215 20 C -0.063 4.063 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.204 0.796 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.132 0.868 31 H 0.143 0.857 32 H 0.077 0.923 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.673 2.837 8.145 15.329 hybrid contribution 0.955 0.466 1.293 1.673 sum -11.718 3.303 9.438 15.405 Atomic orbital electron populations 1.21696 0.95759 1.01122 1.00831 1.21875 0.95078 0.97589 1.00874 1.17351 0.93613 0.91991 0.89749 0.96544 1.22221 0.92244 1.45617 1.01705 0.96345 1.27008 0.97779 0.92576 1.04353 1.71000 1.08551 1.44904 1.33709 0.83680 0.75302 0.78582 0.72591 1.21731 1.16134 1.20036 1.19775 1.06522 0.99028 0.97077 1.22285 0.99093 0.97320 0.88260 1.48048 1.39583 1.20907 1.07509 1.22155 1.04215 1.05479 0.71932 1.77082 1.24028 1.16732 1.02852 1.20656 0.95663 0.93081 0.86925 1.86294 1.65138 1.41988 1.28063 1.23138 0.94127 0.85454 1.03605 0.93860 0.93572 0.91801 0.93270 0.93038 0.94052 0.79559 0.90270 0.88434 0.86846 0.85728 0.92265 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 9.73 71.98 0.70 -4.15 16 2 C -0.12 -4.98 5.01 30.59 0.15 -4.83 16 3 C 0.09 4.56 1.71 -12.28 -0.02 4.54 16 4 H 0.02 0.85 6.64 -2.39 -0.02 0.83 16 5 C -0.58 -33.51 8.68 25.60 0.22 -33.29 16 6 H 0.02 1.16 7.91 -2.91 -0.02 1.13 16 7 C -0.02 -1.18 5.31 84.65 0.45 -0.73 16 8 N -0.94 -59.97 13.70 21.45 0.29 -59.68 16 9 Si 1.08 51.84 26.28 68.60 1.80 53.65 16 10 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 11 H -0.24 -10.07 5.71 99.48 0.57 -9.51 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 13 C -0.21 -9.47 3.82 -20.05 -0.08 -9.55 16 14 C 0.08 2.87 10.71 83.53 0.89 3.77 16 15 N -0.37 -12.35 4.01 -369.59 -1.48 -13.83 16 16 C 0.10 2.02 11.47 127.77 1.47 3.48 16 17 N -0.37 -13.99 11.97 -170.49 -2.04 -16.03 16 18 C 0.24 10.18 7.84 85.30 0.67 10.85 16 19 O -0.31 -12.42 10.42 -93.39 -0.97 -13.40 16 20 C 0.03 0.89 10.70 113.37 1.21 2.10 16 21 H 0.04 1.53 7.40 -2.39 -0.02 1.51 16 22 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 23 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 24 H 0.05 2.20 4.81 -2.39 -0.01 2.19 16 25 H 0.05 2.13 7.84 -2.38 -0.02 2.11 16 26 H 0.25 16.07 8.73 -92.71 -0.81 15.26 16 27 H 0.19 6.35 8.06 -2.91 -0.02 6.33 16 28 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.11 1.59 8.14 -2.39 -0.02 1.58 16 31 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -73.23 277.82 4.18 -69.05 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.91 Total: 8.05 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 5.67 Total: -27.81 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -3.23 Total: -89.54 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.97 Total: -13.40 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 1.80 Total: 53.65 kcal Total: -73.23 4.18 -69.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287732.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.269 kcal (2) G-P(sol) polarization free energy of solvation -73.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds