Wall clock time and date at job start Mon Mar 30 2020 02:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46624 * 2 1 4 4 H 1.08993 * 109.47464 * 305.61345 * 3 2 1 5 5 C 1.50700 * 109.47059 * 65.61167 * 3 2 1 6 6 H 1.07999 * 120.00185 * 28.15054 * 5 3 2 7 7 C 1.37882 * 120.00205 * 208.14379 * 5 3 2 8 8 N 1.31513 * 119.99462 * 6.20914 * 7 5 3 9 9 Si 1.86791 * 120.00274 * 186.20585 * 7 5 3 10 10 H 1.48505 * 109.47341 * 60.00224 * 9 7 5 11 11 H 1.48498 * 109.47352 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47384 * 300.00562 * 9 7 5 13 13 C 1.50707 * 109.47031 * 185.60965 * 3 2 1 14 14 C 1.35274 * 126.05863 * 299.69465 * 13 3 2 15 15 N 1.34955 * 107.82616 * 179.83612 * 14 13 3 16 16 C 1.46502 * 125.99321 * 180.16155 * 15 14 13 17 17 N 1.40082 * 108.02241 * 0.42428 * 15 14 13 18 18 C 1.31112 * 108.18265 * 359.73472 * 17 15 14 19 19 O 1.35991 * 125.95656 * 180.02562 * 18 17 15 20 20 C 1.42904 * 116.99570 * 359.96530 * 19 18 17 21 21 H 1.09000 * 109.46813 * 174.08323 * 1 2 3 22 22 H 1.08994 * 109.47164 * 294.07892 * 1 2 3 23 23 H 1.08996 * 109.47282 * 54.08624 * 1 2 3 24 24 H 1.09001 * 109.47183 * 240.00401 * 2 1 3 25 25 H 1.08997 * 109.47028 * 119.99800 * 2 1 3 26 26 H 0.97005 * 119.99949 * 179.97438 * 8 7 5 27 27 H 1.07996 * 126.09564 * 359.97438 * 14 13 3 28 28 H 1.09003 * 109.46996 * 270.28864 * 16 15 14 29 29 H 1.09001 * 109.46478 * 30.28378 * 16 15 14 30 30 H 1.08996 * 109.47462 * 150.28365 * 16 15 14 31 31 H 1.09001 * 109.47504 * 59.99849 * 20 19 18 32 32 H 1.09003 * 109.46616 * 179.97438 * 20 19 18 33 33 H 1.09000 * 109.46935 * 299.99573 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5969 1.9845 -0.8354 5 6 1.6542 2.1116 1.2940 6 1 1.5287 1.5223 2.1903 7 6 1.4615 3.4763 1.3339 8 7 1.4939 4.1776 0.2218 9 14 1.1544 4.3290 2.9672 10 1 2.3129 4.1039 3.8687 11 1 0.9794 5.7860 2.7398 12 1 -0.0737 3.7749 3.5917 13 6 3.5406 1.4449 -0.1389 14 6 4.4202 0.8738 0.7155 15 7 5.6629 1.0936 0.2372 16 6 6.9141 0.6433 0.8518 17 7 5.5470 1.8332 -0.9468 18 6 4.2731 2.0449 -1.1740 19 8 3.7528 2.7267 -2.2292 20 6 4.6794 3.2618 -3.1764 21 1 -0.3633 -1.0222 -0.1059 22 1 -0.3633 0.4193 0.9382 23 1 -0.3633 0.6028 -0.8323 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.3579 5.1377 0.2497 27 1 4.1722 0.3355 1.6183 28 1 7.2733 1.4045 1.5444 29 1 6.7389 -0.2866 1.3929 30 1 7.6610 0.4768 0.0756 31 1 5.2638 2.4508 -3.6111 32 1 4.1341 3.7797 -3.9654 33 1 5.3471 3.9627 -2.6754 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261287733.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:32 Heat of formation + Delta-G solvation = 35.261113 kcal Electronic energy + Delta-G solvation = -15850.507537 eV Core-core repulsion = 13299.664413 eV Total energy + Delta-G solvation = -2550.843124 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.35397 -37.27917 -34.90131 -31.89778 -31.60077 -29.29295 -27.26227 -26.50150 -24.85305 -23.21734 -20.73356 -19.93854 -18.90618 -16.52621 -16.19489 -15.28968 -15.24649 -14.37967 -14.22517 -14.19059 -13.23961 -13.04585 -12.54406 -12.22040 -12.09624 -11.94684 -11.36039 -11.08834 -10.92281 -10.86331 -10.43312 -10.39226 -10.30512 -10.06183 -9.59691 -9.15414 -8.77450 -8.28800 -8.01793 -7.01409 -5.83537 -3.87258 2.78009 3.15592 3.38054 3.43607 3.45061 3.96166 4.24958 4.55077 5.11860 5.47964 5.51547 5.68375 5.70631 5.78451 5.82051 5.96885 6.14991 6.24818 6.29248 6.50251 6.79390 6.89593 6.96356 7.12299 7.31603 7.37138 7.57270 7.94135 7.97082 8.17389 8.25830 8.56526 8.70135 9.19902 9.74083 11.23253 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.010599 C = 0.010463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.315550 B = 2641.163620 C = 2675.350230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 C 0.101 3.899 4 H 0.066 0.934 5 C -0.505 4.505 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.876 5.876 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.278 1.278 13 C -0.161 4.161 14 C 0.051 3.949 15 N -0.390 5.390 16 C 0.118 3.882 17 N -0.373 5.373 18 C 0.266 3.734 19 O -0.271 6.271 20 C 0.038 3.962 21 H 0.025 0.975 22 H 0.059 0.941 23 H 0.046 0.954 24 H 0.030 0.970 25 H 0.040 0.960 26 H 0.258 0.742 27 H 0.166 0.834 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.663 -5.954 -1.202 9.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.141 4.141 3 C 0.081 3.919 4 H 0.084 0.916 5 C -0.543 4.543 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.513 5.513 9 Si 0.708 3.292 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.172 4.172 14 C -0.091 4.091 15 N -0.180 5.180 16 C -0.024 4.024 17 N -0.213 5.213 18 C 0.062 3.938 19 O -0.174 6.174 20 C -0.058 4.058 21 H 0.044 0.956 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.183 0.817 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.603 -5.519 -1.754 9.558 hybrid contribution -0.475 0.683 1.266 1.515 sum 7.129 -4.836 -0.488 8.628 Atomic orbital electron populations 1.21596 0.96917 0.98206 1.02335 1.21528 0.95123 0.99107 0.98354 1.17391 0.84406 0.90957 0.99103 0.91610 1.20945 1.46737 0.91973 0.94679 0.92996 1.24961 0.95121 0.97820 0.95498 1.69978 1.48992 1.06645 1.25667 0.86871 0.78538 0.78642 0.85137 1.20570 1.21549 1.20353 1.20429 0.99793 1.03863 0.93119 1.21998 0.83121 1.03813 1.00134 1.47457 1.05412 1.45887 1.19219 1.21538 0.84025 0.99272 0.97554 1.77092 1.17474 1.22241 1.04518 1.20585 0.89984 0.93725 0.89543 1.86456 1.31755 1.67267 1.31960 1.22767 0.93642 0.97891 0.91536 0.95551 0.92203 0.93499 0.95159 0.94097 0.93232 0.81651 0.92091 0.90307 0.90498 0.93706 0.89191 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.64 37.16 0.36 -2.30 16 2 C -0.10 -2.20 5.23 -26.73 -0.14 -2.34 16 3 C 0.10 2.55 2.20 -92.92 -0.20 2.35 16 4 H 0.07 1.89 7.26 -51.93 -0.38 1.51 16 5 C -0.51 -13.61 7.24 -34.44 -0.25 -13.86 16 6 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 7 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 8 N -0.88 -25.89 12.87 55.43 0.71 -25.17 16 9 Si 0.88 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C -0.16 -3.88 4.84 -104.91 -0.51 -4.39 16 14 C 0.05 1.06 10.99 -17.23 -0.19 0.87 16 15 N -0.39 -7.57 4.01 -68.17 -0.27 -7.84 16 16 C 0.12 1.54 11.47 59.85 0.69 2.23 16 17 N -0.37 -8.27 11.97 30.56 0.37 -7.90 16 18 C 0.27 6.41 7.84 -17.09 -0.13 6.28 16 19 O -0.27 -6.39 10.42 -19.71 -0.21 -6.60 16 20 C 0.04 0.67 10.70 101.05 1.08 1.75 16 21 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 1.25 7.59 -51.93 -0.39 0.85 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.17 2.98 8.06 -52.49 -0.42 2.56 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 286.19 15.07 4.31 4.31 Total: -1.00 -32.36 286.19 -4.47 -36.83 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -4.97 Total: -2.59 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 0.60 Total: -7.58 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.81 Total: -40.92 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.21 Total: -6.60 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.36 -4.47 -36.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287733.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.089 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds