Wall clock time and date at job start Mon Mar 30 2020 02:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46624 * 2 1 4 4 H 1.08993 * 109.47464 * 305.61345 * 3 2 1 5 5 C 1.50700 * 109.47059 * 65.61167 * 3 2 1 6 6 H 1.07999 * 120.00185 * 28.15054 * 5 3 2 7 7 C 1.37882 * 120.00205 * 208.14379 * 5 3 2 8 8 N 1.31513 * 119.99462 * 6.20914 * 7 5 3 9 9 Si 1.86791 * 120.00274 * 186.20585 * 7 5 3 10 10 H 1.48505 * 109.47341 * 60.00224 * 9 7 5 11 11 H 1.48498 * 109.47352 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47384 * 300.00562 * 9 7 5 13 13 C 1.50707 * 109.47031 * 185.60965 * 3 2 1 14 14 C 1.35274 * 126.05863 * 299.69465 * 13 3 2 15 15 N 1.34955 * 107.82616 * 179.83612 * 14 13 3 16 16 C 1.46502 * 125.99321 * 180.16155 * 15 14 13 17 17 N 1.40082 * 108.02241 * 0.42428 * 15 14 13 18 18 C 1.31112 * 108.18265 * 359.73472 * 17 15 14 19 19 O 1.35991 * 125.95656 * 180.02562 * 18 17 15 20 20 C 1.42904 * 116.99570 * 359.96530 * 19 18 17 21 21 H 1.09000 * 109.46813 * 174.08323 * 1 2 3 22 22 H 1.08994 * 109.47164 * 294.07892 * 1 2 3 23 23 H 1.08996 * 109.47282 * 54.08624 * 1 2 3 24 24 H 1.09001 * 109.47183 * 240.00401 * 2 1 3 25 25 H 1.08997 * 109.47028 * 119.99800 * 2 1 3 26 26 H 0.97005 * 119.99949 * 179.97438 * 8 7 5 27 27 H 1.07996 * 126.09564 * 359.97438 * 14 13 3 28 28 H 1.09003 * 109.46996 * 270.28864 * 16 15 14 29 29 H 1.09001 * 109.46478 * 30.28378 * 16 15 14 30 30 H 1.08996 * 109.47462 * 150.28365 * 16 15 14 31 31 H 1.09001 * 109.47504 * 59.99849 * 20 19 18 32 32 H 1.09003 * 109.46616 * 179.97438 * 20 19 18 33 33 H 1.09000 * 109.46935 * 299.99573 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5969 1.9845 -0.8354 5 6 1.6542 2.1116 1.2940 6 1 1.5287 1.5223 2.1903 7 6 1.4615 3.4763 1.3339 8 7 1.4939 4.1776 0.2218 9 14 1.1544 4.3290 2.9672 10 1 2.3129 4.1039 3.8687 11 1 0.9794 5.7860 2.7398 12 1 -0.0737 3.7749 3.5917 13 6 3.5406 1.4449 -0.1389 14 6 4.4202 0.8738 0.7155 15 7 5.6629 1.0936 0.2372 16 6 6.9141 0.6433 0.8518 17 7 5.5470 1.8332 -0.9468 18 6 4.2731 2.0449 -1.1740 19 8 3.7528 2.7267 -2.2292 20 6 4.6794 3.2618 -3.1764 21 1 -0.3633 -1.0222 -0.1059 22 1 -0.3633 0.4193 0.9382 23 1 -0.3633 0.6028 -0.8323 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.3579 5.1377 0.2497 27 1 4.1722 0.3355 1.6183 28 1 7.2733 1.4045 1.5444 29 1 6.7389 -0.2866 1.3929 30 1 7.6610 0.4768 0.0756 31 1 5.2638 2.4508 -3.6111 32 1 4.1341 3.7797 -3.9654 33 1 5.3471 3.9627 -2.6754 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261287733.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:31 Heat of formation + Delta-G solvation = 12.516647 kcal Electronic energy + Delta-G solvation = -15851.493811 eV Core-core repulsion = 13299.664413 eV Total energy + Delta-G solvation = -2551.829398 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.98142 -38.91266 -36.72678 -33.71909 -33.22075 -30.96342 -28.70099 -28.24412 -26.49925 -24.97645 -22.37256 -21.55455 -20.69959 -18.22229 -18.14918 -16.88068 -16.79557 -16.34920 -15.73686 -15.57636 -15.04639 -14.54184 -14.27438 -13.82704 -13.40479 -13.35776 -13.05602 -12.78268 -12.73683 -12.66097 -12.21685 -12.03717 -11.91364 -11.86371 -11.32038 -11.03241 -10.68667 -10.39127 -9.65556 -8.69379 -7.92141 -6.01842 1.15503 1.44581 1.45543 1.51927 1.73629 2.20744 2.52958 2.74774 3.37506 3.91524 4.27760 4.38014 4.39498 4.54739 4.57313 4.61063 4.63669 4.74379 4.75792 4.86470 5.12087 5.24704 5.29823 5.44798 5.61109 5.66420 5.74769 5.94378 6.10540 6.47301 6.50165 6.64274 7.02350 7.14538 7.61993 9.13096 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.010599 C = 0.010463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.315550 B = 2641.163620 C = 2675.350230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.098 4.098 3 C 0.104 3.896 4 H 0.016 0.984 5 C -0.501 4.501 6 H 0.059 0.941 7 C 0.014 3.986 8 N -0.914 5.914 9 Si 0.939 3.061 10 H -0.273 1.273 11 H -0.296 1.296 12 H -0.267 1.267 13 C -0.207 4.207 14 C 0.067 3.933 15 N -0.380 5.380 16 C 0.105 3.895 17 N -0.383 5.383 18 C 0.238 3.762 19 O -0.306 6.306 20 C 0.036 3.964 21 H 0.061 0.939 22 H 0.047 0.953 23 H 0.029 0.971 24 H 0.035 0.965 25 H 0.058 0.942 26 H 0.252 0.748 27 H 0.197 0.803 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.116 0.884 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.798 -7.496 0.365 10.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.135 4.135 3 C 0.084 3.916 4 H 0.035 0.965 5 C -0.540 4.540 6 H 0.077 0.923 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.766 3.234 10 H -0.199 1.199 11 H -0.223 1.223 12 H -0.192 1.192 13 C -0.219 4.219 14 C -0.077 4.077 15 N -0.169 5.169 16 C -0.035 4.035 17 N -0.224 5.224 18 C 0.036 3.964 19 O -0.210 6.210 20 C -0.059 4.059 21 H 0.080 0.920 22 H 0.066 0.934 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.214 0.786 28 H 0.093 0.907 29 H 0.135 0.865 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.770 -7.079 -0.181 11.272 hybrid contribution -0.725 1.083 0.765 1.511 sum 8.045 -5.997 0.585 10.051 Atomic orbital electron populations 1.21545 0.96137 0.99983 1.00934 1.21453 0.95796 0.96892 0.99407 1.17197 0.85602 0.92390 0.96365 0.96526 1.21289 1.45114 0.92065 0.95508 0.92287 1.25698 0.95665 0.98824 0.98310 1.70164 1.51159 1.06325 1.27714 0.85914 0.78853 0.77146 0.81497 1.19878 1.22256 1.19210 1.20443 0.99579 1.06770 0.95090 1.22334 0.83178 1.02293 0.99886 1.48006 1.06971 1.43929 1.17995 1.22077 0.81822 1.01288 0.98307 1.77025 1.16547 1.22860 1.05967 1.20827 0.90643 0.94739 0.90213 1.86385 1.34100 1.67644 1.32835 1.23003 0.93556 0.98274 0.91103 0.92020 0.93403 0.95193 0.94573 0.92321 0.93944 0.78595 0.90706 0.86548 0.89086 0.92353 0.86581 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 9.64 71.98 0.69 -4.33 16 2 C -0.10 -4.08 5.23 30.60 0.16 -3.92 16 3 C 0.10 5.33 2.20 -12.28 -0.03 5.31 16 4 H 0.02 0.99 7.26 -2.39 -0.02 0.98 16 5 C -0.50 -26.98 7.24 25.60 0.19 -26.79 16 6 H 0.06 3.02 7.82 -2.91 -0.02 3.00 16 7 C 0.01 0.77 5.45 84.66 0.46 1.23 16 8 N -0.91 -55.88 12.87 21.45 0.28 -55.60 16 9 Si 0.94 44.42 29.54 68.60 2.03 46.44 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 C -0.21 -10.00 4.84 -20.05 -0.10 -10.10 16 14 C 0.07 2.66 10.99 83.53 0.92 3.58 16 15 N -0.38 -13.82 4.01 -369.59 -1.48 -15.30 16 16 C 0.10 2.32 11.47 127.77 1.47 3.78 16 17 N -0.38 -16.68 11.97 -170.48 -2.04 -18.72 16 18 C 0.24 11.67 7.84 85.30 0.67 12.34 16 19 O -0.31 -14.92 10.42 -93.45 -0.97 -15.89 16 20 C 0.04 1.29 10.70 113.37 1.21 2.50 16 21 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.05 1.95 7.59 -2.39 -0.02 1.93 16 23 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 27 H 0.20 6.32 8.06 -2.91 -0.02 6.30 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 33 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -71.73 286.19 4.52 -67.21 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.07 Total: 8.26 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 5.64 Total: -16.40 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -3.25 Total: -89.62 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.97 Total: -15.89 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -71.73 4.52 -67.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287733.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.730 kcal (2) G-P(sol) polarization free energy of solvation -71.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds