Wall clock time and date at job start Mon Mar 30 2020 02:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47407 * 2 1 4 4 H 1.09002 * 109.47208 * 305.79212 * 3 2 1 5 5 C 1.50701 * 109.47288 * 65.78901 * 3 2 1 6 6 H 1.08001 * 119.99852 * 26.08208 * 5 3 2 7 7 C 1.37878 * 120.00263 * 206.08444 * 5 3 2 8 8 N 1.31518 * 119.99733 * 5.41502 * 7 5 3 9 9 Si 1.86793 * 120.00181 * 185.41551 * 7 5 3 10 10 H 1.48506 * 109.46900 * 59.99922 * 9 7 5 11 11 H 1.48497 * 109.47321 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47326 * 300.00034 * 9 7 5 13 13 C 1.50702 * 109.47452 * 185.79185 * 3 2 1 14 14 C 1.39825 * 126.07796 * 300.02283 * 13 3 2 15 15 N 1.30828 * 108.27831 * 179.97438 * 14 13 3 16 16 N 1.40071 * 108.34435 * 359.97438 * 15 14 13 17 17 C 1.46504 * 126.03304 * 180.02562 * 16 15 14 18 18 C 1.35127 * 107.92625 * 359.77333 * 16 15 14 19 19 O 1.35761 * 126.19376 * 180.24842 * 18 16 15 20 20 C 1.42893 * 117.00019 * 85.79377 * 19 18 16 21 21 H 1.09001 * 109.46866 * 294.69028 * 1 2 3 22 22 H 1.08996 * 109.46711 * 54.68861 * 1 2 3 23 23 H 1.08994 * 109.47119 * 174.69042 * 1 2 3 24 24 H 1.09005 * 109.46636 * 239.99865 * 2 1 3 25 25 H 1.08997 * 109.47120 * 120.00160 * 2 1 3 26 26 H 0.97001 * 119.99556 * 180.02562 * 8 7 5 27 27 H 1.08000 * 125.85763 * 0.02562 * 14 13 3 28 28 H 1.08996 * 109.46607 * 95.14527 * 17 16 15 29 29 H 1.09006 * 109.46549 * 215.13931 * 17 16 15 30 30 H 1.08991 * 109.47359 * 335.14039 * 17 16 15 31 31 H 1.08990 * 109.47785 * 64.95586 * 20 19 18 32 32 H 1.09000 * 109.46754 * 184.96027 * 20 19 18 33 33 H 1.09004 * 109.46935 * 304.94774 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5946 1.9853 -0.8336 5 6 1.6583 2.1103 1.2958 6 1 1.5027 1.5161 2.1842 7 6 1.5074 3.4798 1.3473 8 7 1.5917 4.1925 0.2452 9 14 1.1834 4.3230 2.9823 10 1 2.3097 4.0509 3.9113 11 1 1.0615 5.7874 2.7685 12 1 -0.0777 3.8010 3.5671 13 6 3.5403 1.4448 -0.1434 14 6 4.4522 0.8481 0.7327 15 7 5.6595 1.0613 0.2761 16 7 5.5585 1.8017 -0.9086 17 6 6.6765 2.2525 -1.7411 18 6 4.2474 2.0219 -1.1509 19 8 3.7302 2.6994 -2.2075 20 6 3.5106 1.9578 -3.4090 21 1 -0.3633 0.4293 0.9337 22 1 -0.3632 0.5940 -0.8386 23 1 -0.3633 -1.0232 -0.0951 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.4859 5.1561 0.2815 27 1 4.2025 0.3039 1.6316 28 1 6.8435 1.5351 -2.5445 29 1 6.4415 3.2277 -2.1678 30 1 7.5759 2.3303 -1.1305 31 1 2.7462 1.2008 -3.2343 32 1 3.1793 2.6335 -4.1976 33 1 4.4390 1.4736 -3.7120 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261299097.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:35 Heat of formation + Delta-G solvation = 35.255270 kcal Electronic energy + Delta-G solvation = -16035.160410 eV Core-core repulsion = 13484.317032 eV Total energy + Delta-G solvation = -2550.843377 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.45526 -37.10990 -34.98792 -32.21478 -31.63114 -29.07162 -27.34835 -26.05744 -25.26826 -23.27849 -20.81616 -19.95621 -19.01345 -16.97685 -16.23822 -15.46102 -14.80663 -14.40769 -13.98308 -13.93212 -13.28204 -12.97100 -12.90919 -12.50581 -12.11646 -11.94969 -11.51662 -11.17650 -10.91102 -10.84720 -10.67355 -10.35769 -10.12226 -9.75840 -9.45024 -9.16938 -8.84020 -8.39160 -8.29131 -7.12146 -5.85560 -3.89269 2.51382 3.12488 3.39317 3.44237 3.46984 3.77802 4.47091 4.55577 5.14485 5.46203 5.48535 5.51463 5.71258 5.73185 5.87149 5.93718 6.21575 6.22399 6.42130 6.56278 6.68769 6.83299 7.00799 7.08469 7.20063 7.29159 7.43627 7.74443 7.92885 8.08298 8.40459 8.49453 8.62828 9.16296 9.72445 11.20947 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023002 B = 0.011186 C = 0.010018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.988156 B = 2502.620415 C = 2794.410242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 C 0.103 3.897 4 H 0.060 0.940 5 C -0.504 4.504 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.874 5.874 9 Si 0.881 3.119 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 C -0.156 4.156 14 C 0.058 3.942 15 N -0.306 5.306 16 N -0.401 5.401 17 C 0.109 3.891 18 C 0.219 3.781 19 O -0.288 6.288 20 C 0.034 3.966 21 H 0.060 0.940 22 H 0.044 0.956 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.045 0.955 26 H 0.258 0.742 27 H 0.176 0.824 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 -4.965 -5.791 8.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.142 4.142 3 C 0.083 3.917 4 H 0.078 0.922 5 C -0.542 4.542 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.511 5.511 9 Si 0.709 3.291 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.203 1.203 13 C -0.167 4.167 14 C -0.127 4.127 15 N -0.131 5.131 16 N -0.196 5.196 17 C -0.034 4.034 18 C 0.055 3.945 19 O -0.197 6.197 20 C -0.062 4.062 21 H 0.080 0.920 22 H 0.063 0.937 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.193 0.807 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.704 -4.661 -5.843 9.402 hybrid contribution -0.741 0.743 0.655 1.237 sum 4.964 -3.917 -5.188 8.179 Atomic orbital electron populations 1.21600 0.96853 0.98282 1.02350 1.21517 0.95094 0.99057 0.98555 1.17378 0.84355 0.90869 0.99056 0.92193 1.20921 1.46603 0.91549 0.95115 0.92782 1.24969 0.95059 0.97785 0.95636 1.69978 1.48921 1.06066 1.26147 0.86847 0.78666 0.78482 0.85102 1.20391 1.21567 1.20331 1.20825 0.99757 1.01868 0.94297 1.23443 0.89466 1.00163 0.99597 1.77194 1.22711 1.15205 0.98034 1.48701 1.04837 1.45169 1.20924 1.21562 0.88689 0.99562 0.93561 1.18779 0.82728 1.00762 0.92249 1.86256 1.80110 1.33917 1.19412 1.22976 0.99520 0.97388 0.86285 0.92047 0.93673 0.95439 0.95400 0.93660 0.93216 0.80704 0.92297 0.90414 0.89999 0.93152 0.89126 0.94850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.65 37.16 0.36 -2.22 16 2 C -0.10 -2.17 5.24 -26.73 -0.14 -2.31 16 3 C 0.10 2.54 2.15 -92.93 -0.20 2.34 16 4 H 0.06 1.65 7.25 -51.93 -0.38 1.28 16 5 C -0.50 -13.52 7.27 -34.44 -0.25 -13.77 16 6 H 0.05 1.42 7.82 -52.49 -0.41 1.01 16 7 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 8 N -0.87 -25.59 12.90 55.43 0.72 -24.87 16 9 Si 0.88 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C -0.16 -3.70 4.81 -104.85 -0.50 -4.21 16 14 C 0.06 1.27 11.62 -17.39 -0.20 1.07 16 15 N -0.31 -6.60 12.57 30.61 0.38 -6.21 16 16 N -0.40 -8.23 4.02 -68.28 -0.27 -8.51 16 17 C 0.11 1.62 11.42 59.85 0.68 2.30 16 18 C 0.22 4.97 6.94 -16.92 -0.12 4.85 16 19 O -0.29 -6.26 10.25 -18.99 -0.19 -6.46 16 20 C 0.03 0.55 11.13 101.05 1.12 1.68 16 21 H 0.06 1.25 7.58 -51.93 -0.39 0.86 16 22 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.18 3.44 8.06 -52.49 -0.42 3.01 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 286.70 15.07 4.32 4.32 Total: -1.00 -31.56 286.70 -4.38 -35.94 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.97 Total: -2.38 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 0.66 Total: -8.45 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.83 Total: -39.59 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.19 Total: -6.46 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.56 -4.38 -35.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261299097.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.192 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds