Wall clock time and date at job start Mon Mar 30 2020 02:58:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.52992 * 109.47407 * 2 1
4 4 H 1.09002 * 109.47208 * 305.79212 * 3 2 1
5 5 C 1.50701 * 109.47288 * 65.78901 * 3 2 1
6 6 H 1.08001 * 119.99852 * 26.08208 * 5 3 2
7 7 C 1.37878 * 120.00263 * 206.08444 * 5 3 2
8 8 N 1.31518 * 119.99733 * 5.41502 * 7 5 3
9 9 Si 1.86793 * 120.00181 * 185.41551 * 7 5 3
10 10 H 1.48506 * 109.46900 * 59.99922 * 9 7 5
11 11 H 1.48497 * 109.47321 * 179.97438 * 9 7 5
12 12 H 1.48495 * 109.47326 * 300.00034 * 9 7 5
13 13 C 1.50702 * 109.47452 * 185.79185 * 3 2 1
14 14 C 1.39825 * 126.07796 * 300.02283 * 13 3 2
15 15 N 1.30828 * 108.27831 * 179.97438 * 14 13 3
16 16 N 1.40071 * 108.34435 * 359.97438 * 15 14 13
17 17 C 1.46504 * 126.03304 * 180.02562 * 16 15 14
18 18 C 1.35127 * 107.92625 * 359.77333 * 16 15 14
19 19 O 1.35761 * 126.19376 * 180.24842 * 18 16 15
20 20 C 1.42893 * 117.00019 * 85.79377 * 19 18 16
21 21 H 1.09001 * 109.46866 * 294.69028 * 1 2 3
22 22 H 1.08996 * 109.46711 * 54.68861 * 1 2 3
23 23 H 1.08994 * 109.47119 * 174.69042 * 1 2 3
24 24 H 1.09005 * 109.46636 * 239.99865 * 2 1 3
25 25 H 1.08997 * 109.47120 * 120.00160 * 2 1 3
26 26 H 0.97001 * 119.99556 * 180.02562 * 8 7 5
27 27 H 1.08000 * 125.85763 * 0.02562 * 14 13 3
28 28 H 1.08996 * 109.46607 * 95.14527 * 17 16 15
29 29 H 1.09006 * 109.46549 * 215.13931 * 17 16 15
30 30 H 1.08991 * 109.47359 * 335.14039 * 17 16 15
31 31 H 1.08990 * 109.47785 * 64.95586 * 20 19 18
32 32 H 1.09000 * 109.46754 * 184.96027 * 20 19 18
33 33 H 1.09004 * 109.46935 * 304.94774 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.5946 1.9853 -0.8336
5 6 1.6583 2.1103 1.2958
6 1 1.5027 1.5161 2.1842
7 6 1.5074 3.4798 1.3473
8 7 1.5917 4.1925 0.2452
9 14 1.1834 4.3230 2.9823
10 1 2.3097 4.0509 3.9113
11 1 1.0615 5.7874 2.7685
12 1 -0.0777 3.8010 3.5671
13 6 3.5403 1.4448 -0.1434
14 6 4.4522 0.8481 0.7327
15 7 5.6595 1.0613 0.2761
16 7 5.5585 1.8017 -0.9086
17 6 6.6765 2.2525 -1.7411
18 6 4.2474 2.0219 -1.1509
19 8 3.7302 2.6994 -2.2075
20 6 3.5106 1.9578 -3.4090
21 1 -0.3633 0.4293 0.9337
22 1 -0.3632 0.5940 -0.8386
23 1 -0.3633 -1.0232 -0.0951
24 1 1.8933 -0.5139 -0.8900
25 1 1.8934 -0.5138 0.8899
26 1 1.4859 5.1561 0.2815
27 1 4.2025 0.3039 1.6316
28 1 6.8435 1.5351 -2.5445
29 1 6.4415 3.2277 -2.1678
30 1 7.5759 2.3303 -1.1305
31 1 2.7462 1.2008 -3.2343
32 1 3.1793 2.6335 -4.1976
33 1 4.4390 1.4736 -3.7120
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261299097.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:35
Heat of formation + Delta-G solvation = 35.255270 kcal
Electronic energy + Delta-G solvation = -16035.160410 eV
Core-core repulsion = 13484.317032 eV
Total energy + Delta-G solvation = -2550.843377 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-40.45526 -37.10990 -34.98792 -32.21478 -31.63114 -29.07162 -27.34835 -26.05744
-25.26826 -23.27849 -20.81616 -19.95621 -19.01345 -16.97685 -16.23822 -15.46102
-14.80663 -14.40769 -13.98308 -13.93212 -13.28204 -12.97100 -12.90919 -12.50581
-12.11646 -11.94969 -11.51662 -11.17650 -10.91102 -10.84720 -10.67355 -10.35769
-10.12226 -9.75840 -9.45024 -9.16938 -8.84020 -8.39160 -8.29131 -7.12146
-5.85560 -3.89269 2.51382 3.12488 3.39317 3.44237 3.46984 3.77802
4.47091 4.55577 5.14485 5.46203 5.48535 5.51463 5.71258 5.73185
5.87149 5.93718 6.21575 6.22399 6.42130 6.56278 6.68769 6.83299
7.00799 7.08469 7.20063 7.29159 7.43627 7.74443 7.92885 8.08298
8.40459 8.49453 8.62828 9.16296 9.72445 11.20947
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.023002 B = 0.011186 C = 0.010018
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1216.988156 B = 2502.620415 C = 2794.410242
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.104 4.104
3 C 0.103 3.897
4 H 0.060 0.940
5 C -0.504 4.504
6 H 0.054 0.946
7 C 0.069 3.931
8 N -0.874 5.874
9 Si 0.881 3.119
10 H -0.278 1.278
11 H -0.290 1.290
12 H -0.278 1.278
13 C -0.156 4.156
14 C 0.058 3.942
15 N -0.306 5.306
16 N -0.401 5.401
17 C 0.109 3.891
18 C 0.219 3.781
19 O -0.288 6.288
20 C 0.034 3.966
21 H 0.060 0.940
22 H 0.044 0.956
23 H 0.027 0.973
24 H 0.027 0.973
25 H 0.045 0.955
26 H 0.258 0.742
27 H 0.176 0.824
28 H 0.059 0.941
29 H 0.077 0.923
30 H 0.081 0.919
31 H 0.050 0.950
32 H 0.090 0.910
33 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.503 -4.965 -5.791 8.858
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.142 4.142
3 C 0.083 3.917
4 H 0.078 0.922
5 C -0.542 4.542
6 H 0.072 0.928
7 C -0.134 4.134
8 N -0.511 5.511
9 Si 0.709 3.291
10 H -0.204 1.204
11 H -0.216 1.216
12 H -0.203 1.203
13 C -0.167 4.167
14 C -0.127 4.127
15 N -0.131 5.131
16 N -0.196 5.196
17 C -0.034 4.034
18 C 0.055 3.945
19 O -0.197 6.197
20 C -0.062 4.062
21 H 0.080 0.920
22 H 0.063 0.937
23 H 0.046 0.954
24 H 0.046 0.954
25 H 0.063 0.937
26 H 0.068 0.932
27 H 0.193 0.807
28 H 0.077 0.923
29 H 0.096 0.904
30 H 0.100 0.900
31 H 0.068 0.932
32 H 0.109 0.891
33 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges 5.704 -4.661 -5.843 9.402
hybrid contribution -0.741 0.743 0.655 1.237
sum 4.964 -3.917 -5.188 8.179
Atomic orbital electron populations
1.21600 0.96853 0.98282 1.02350 1.21517 0.95094 0.99057 0.98555
1.17378 0.84355 0.90869 0.99056 0.92193 1.20921 1.46603 0.91549
0.95115 0.92782 1.24969 0.95059 0.97785 0.95636 1.69978 1.48921
1.06066 1.26147 0.86847 0.78666 0.78482 0.85102 1.20391 1.21567
1.20331 1.20825 0.99757 1.01868 0.94297 1.23443 0.89466 1.00163
0.99597 1.77194 1.22711 1.15205 0.98034 1.48701 1.04837 1.45169
1.20924 1.21562 0.88689 0.99562 0.93561 1.18779 0.82728 1.00762
0.92249 1.86256 1.80110 1.33917 1.19412 1.22976 0.99520 0.97388
0.86285 0.92047 0.93673 0.95439 0.95400 0.93660 0.93216 0.80704
0.92297 0.90414 0.89999 0.93152 0.89126 0.94850
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.58 9.65 37.16 0.36 -2.22 16
2 C -0.10 -2.17 5.24 -26.73 -0.14 -2.31 16
3 C 0.10 2.54 2.15 -92.93 -0.20 2.34 16
4 H 0.06 1.65 7.25 -51.93 -0.38 1.28 16
5 C -0.50 -13.52 7.27 -34.44 -0.25 -13.77 16
6 H 0.05 1.42 7.82 -52.49 -0.41 1.01 16
7 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16
8 N -0.87 -25.59 12.90 55.43 0.72 -24.87 16
9 Si 0.88 21.64 29.54 -169.99 -5.02 16.62 16
10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16
11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16
12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
13 C -0.16 -3.70 4.81 -104.85 -0.50 -4.21 16
14 C 0.06 1.27 11.62 -17.39 -0.20 1.07 16
15 N -0.31 -6.60 12.57 30.61 0.38 -6.21 16
16 N -0.40 -8.23 4.02 -68.28 -0.27 -8.51 16
17 C 0.11 1.62 11.42 59.85 0.68 2.30 16
18 C 0.22 4.97 6.94 -16.92 -0.12 4.85 16
19 O -0.29 -6.26 10.25 -18.99 -0.19 -6.46 16
20 C 0.03 0.55 11.13 101.05 1.12 1.68 16
21 H 0.06 1.25 7.58 -51.93 -0.39 0.86 16
22 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16
23 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16
24 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16
25 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16
26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16
27 H 0.18 3.44 8.06 -52.49 -0.42 3.01 16
28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16
30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16
31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16
33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16
LS Contribution 286.70 15.07 4.32 4.32
Total: -1.00 -31.56 286.70 -4.38 -35.94
By element:
Atomic # 1 Polarization: 2.59 SS G_CDS: -4.97 Total: -2.38 kcal
Atomic # 6 Polarization: -9.11 SS G_CDS: 0.66 Total: -8.45 kcal
Atomic # 7 Polarization: -40.42 SS G_CDS: 0.83 Total: -39.59 kcal
Atomic # 8 Polarization: -6.26 SS G_CDS: -0.19 Total: -6.46 kcal
Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal
Total LS contribution 4.32 Total: 4.32 kcal
Total: -31.56 -4.38 -35.94 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261299097.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.192 kcal
(2) G-P(sol) polarization free energy of solvation -31.557 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.635 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.380 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.937 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.255 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds