Wall clock time and date at job start Mon Mar 30 2020 02:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47056 * 2 1 4 4 C 1.53002 * 109.46982 * 240.00314 * 2 1 3 5 5 C 1.52997 * 109.47452 * 120.00172 * 2 1 3 6 6 C 1.53006 * 109.47127 * 59.99878 * 5 2 1 7 7 C 1.50698 * 109.47184 * 179.97438 * 6 5 2 8 8 N 1.30460 * 126.06818 * 90.02477 * 7 6 5 9 9 O 1.21274 * 110.68205 * 179.97438 * 8 7 6 10 10 C 1.34755 * 109.53656 * 0.02562 * 9 8 7 11 11 C 1.40337 * 126.79815 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00220 * 179.97438 * 11 10 9 13 13 C 1.40464 * 119.99870 * 359.97438 * 11 10 9 14 14 N 1.30507 * 120.00026 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99985 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47166 * 90.00378 * 15 13 11 17 17 H 1.48502 * 109.47235 * 209.99742 * 15 13 11 18 18 H 1.48498 * 109.47511 * 330.00325 * 15 13 11 19 19 N 1.33330 * 106.40853 * 359.73655 * 10 9 8 20 20 H 1.08998 * 109.47061 * 299.99160 * 1 2 3 21 21 H 1.09000 * 109.47360 * 59.99978 * 1 2 3 22 22 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47534 * 179.97438 * 3 2 1 24 24 H 1.08996 * 109.47134 * 300.00694 * 3 2 1 25 25 H 1.09001 * 109.46997 * 59.99942 * 3 2 1 26 26 H 1.09002 * 109.47067 * 299.99652 * 4 2 1 27 27 H 1.09000 * 109.47312 * 59.99678 * 4 2 1 28 28 H 1.09004 * 109.46930 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.46832 * 300.00199 * 5 2 1 30 30 H 1.08993 * 109.47194 * 179.97438 * 5 2 1 31 31 H 1.09001 * 109.46801 * 300.00272 * 6 5 2 32 32 H 1.09001 * 109.46998 * 59.99868 * 6 5 2 33 33 H 0.96996 * 120.00202 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5301 -2.1638 1.2492 7 6 2.0330 -2.8744 2.4792 8 7 1.4284 -2.9327 3.6338 9 8 2.0811 -3.5772 4.4271 10 6 3.2110 -4.0104 3.8343 11 6 4.2235 -4.7858 4.4201 12 1 5.0876 -5.0735 3.8395 13 6 4.1131 -5.1877 5.7614 14 7 3.0688 -4.8405 6.4628 15 14 5.4605 -6.2204 6.5409 16 1 6.4779 -5.3274 7.1515 17 1 4.8724 -7.0909 7.5905 18 1 6.1024 -7.0636 5.5007 19 7 3.1743 -3.5611 2.5796 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6767 -1.7489 -1.2493 27 1 1.6766 -0.2074 -2.1393 28 1 3.1301 -0.7208 -1.2495 29 1 1.6768 -0.2074 2.1392 30 1 3.1301 -0.7216 1.2489 31 1 0.4401 -2.1638 1.2492 32 1 1.8934 -2.6776 0.3591 33 1 2.9923 -5.1184 7.3890 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300862521.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:13 Heat of formation + Delta-G solvation = 15.209307 kcal Electronic energy + Delta-G solvation = -15261.776089 eV Core-core repulsion = 12710.063454 eV Total energy + Delta-G solvation = -2551.712636 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.94756 -37.90844 -34.07583 -33.86591 -31.24264 -29.22994 -27.16954 -27.15622 -26.43137 -23.94521 -21.50935 -20.40723 -18.40887 -17.55072 -15.72674 -15.41856 -15.11339 -14.63512 -14.38578 -13.93576 -13.66465 -13.10492 -12.53672 -12.25271 -11.81361 -11.70704 -11.58051 -11.51966 -11.48194 -11.44187 -10.86469 -10.57669 -10.49922 -10.29601 -10.18720 -9.95219 -9.87559 -9.36195 -8.83669 -8.18649 -7.05298 -4.98300 2.81410 2.97487 3.03523 3.33509 3.75665 3.96021 4.86326 4.98042 4.98305 5.08148 5.31265 5.48406 5.54706 5.65739 5.74897 5.74952 5.89214 5.90522 6.03981 6.04347 6.06223 6.20187 6.23485 6.36854 6.48110 6.51201 6.69766 6.83421 6.88699 7.51306 7.94366 8.16290 8.37601 8.51436 9.94233 10.46002 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.061717 B = 0.005527 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.575926 B = 5064.473560 C = 5223.122288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.069 4.069 3 C -0.139 4.139 4 C -0.143 4.143 5 C -0.098 4.098 6 C -0.017 4.017 7 C 0.160 3.840 8 N -0.474 5.474 9 O 0.043 5.957 10 C 0.301 3.699 11 C -0.418 4.418 12 H 0.112 0.888 13 C 0.071 3.929 14 N -0.765 5.765 15 Si 0.936 3.064 16 H -0.264 1.264 17 H -0.273 1.273 18 H -0.256 1.256 19 N -0.614 5.614 20 H 0.054 0.946 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.855 5.584 -7.095 9.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.070 4.070 3 C -0.197 4.197 4 C -0.200 4.200 5 C -0.137 4.137 6 C -0.056 4.056 7 C -0.114 4.114 8 N -0.204 5.204 9 O -0.003 6.003 10 C 0.110 3.890 11 C -0.456 4.456 12 H 0.130 0.870 13 C -0.154 4.154 14 N -0.393 5.393 15 Si 0.758 3.242 16 H -0.189 1.189 17 H -0.197 1.197 18 H -0.180 1.180 19 N -0.358 5.358 20 H 0.073 0.927 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.545 5.965 -7.127 9.422 hybrid contribution 0.633 -0.561 0.634 1.057 sum -0.913 5.404 -6.493 8.497 Atomic orbital electron populations 1.21935 0.94834 1.02060 1.01244 1.20553 0.95563 0.95240 0.95599 1.21851 1.00990 0.95539 1.01292 1.21930 1.01173 1.00520 0.96409 1.21549 1.01025 0.94383 0.96735 1.19739 0.99675 0.93893 0.92252 1.24987 0.91481 0.99662 0.95303 1.74304 1.22501 1.21097 1.02485 1.85521 1.27707 1.52399 1.34668 1.24248 0.87443 0.92010 0.85321 1.18554 1.03454 1.27820 0.95744 0.87044 1.26192 0.97041 0.95261 0.96900 1.69638 1.25963 1.33766 1.09920 0.85846 0.79808 0.79418 0.79081 1.18891 1.19740 1.17999 1.72222 1.21425 1.24803 1.17393 0.92697 0.93128 0.92191 0.92714 0.92979 0.92803 0.92140 0.93181 0.92577 0.92027 0.91609 0.90875 0.90297 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.12 37.16 0.30 -1.44 16 2 C -0.07 -0.91 0.80 -154.51 -0.12 -1.03 16 3 C -0.14 -1.62 8.47 37.16 0.31 -1.30 16 4 C -0.14 -1.74 8.12 37.16 0.30 -1.44 16 5 C -0.10 -1.66 4.25 -26.73 -0.11 -1.78 16 6 C -0.02 -0.32 5.14 -27.88 -0.14 -0.47 16 7 C 0.16 4.11 7.43 -156.78 -1.17 2.94 16 8 N -0.47 -13.30 12.15 31.51 0.38 -12.92 16 9 O 0.04 1.30 9.74 15.13 0.15 1.45 16 10 C 0.30 8.77 7.82 -16.35 -0.13 8.64 16 11 C -0.42 -11.26 9.48 -37.95 -0.36 -11.62 16 12 H 0.11 2.83 7.85 -52.49 -0.41 2.41 16 13 C 0.07 1.74 5.50 -17.28 -0.10 1.65 16 14 N -0.77 -19.84 12.06 55.57 0.67 -19.17 16 15 Si 0.94 17.80 29.56 -169.99 -5.03 12.78 16 16 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 17 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 18 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 19 N -0.61 -17.23 11.61 -11.51 -0.13 -17.36 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.32 6.43 -51.93 -0.33 0.99 16 32 H 0.08 1.44 6.43 -51.93 -0.33 1.11 16 33 H 0.29 6.67 8.29 -40.82 -0.34 6.33 16 LS Contribution 276.72 15.07 4.17 4.17 Total: -1.00 -30.35 276.72 -5.68 -36.04 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.69 Total: 0.87 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.21 Total: -5.85 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.92 Total: -49.45 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.15 Total: 1.45 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.35 -5.68 -36.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300862521.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.246 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds