Wall clock time and date at job start Mon Mar 30 2020 02:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47056 * 2 1 4 4 C 1.53002 * 109.46982 * 240.00314 * 2 1 3 5 5 C 1.52997 * 109.47452 * 120.00172 * 2 1 3 6 6 C 1.53006 * 109.47127 * 59.99878 * 5 2 1 7 7 C 1.50698 * 109.47184 * 179.97438 * 6 5 2 8 8 N 1.30460 * 126.06818 * 90.02477 * 7 6 5 9 9 O 1.21274 * 110.68205 * 179.97438 * 8 7 6 10 10 C 1.34755 * 109.53656 * 0.02562 * 9 8 7 11 11 C 1.40337 * 126.79815 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00220 * 179.97438 * 11 10 9 13 13 C 1.40464 * 119.99870 * 359.97438 * 11 10 9 14 14 N 1.30507 * 120.00026 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99985 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47166 * 90.00378 * 15 13 11 17 17 H 1.48502 * 109.47235 * 209.99742 * 15 13 11 18 18 H 1.48498 * 109.47511 * 330.00325 * 15 13 11 19 19 N 1.33330 * 106.40853 * 359.73655 * 10 9 8 20 20 H 1.08998 * 109.47061 * 299.99160 * 1 2 3 21 21 H 1.09000 * 109.47360 * 59.99978 * 1 2 3 22 22 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47534 * 179.97438 * 3 2 1 24 24 H 1.08996 * 109.47134 * 300.00694 * 3 2 1 25 25 H 1.09001 * 109.46997 * 59.99942 * 3 2 1 26 26 H 1.09002 * 109.47067 * 299.99652 * 4 2 1 27 27 H 1.09000 * 109.47312 * 59.99678 * 4 2 1 28 28 H 1.09004 * 109.46930 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.46832 * 300.00199 * 5 2 1 30 30 H 1.08993 * 109.47194 * 179.97438 * 5 2 1 31 31 H 1.09001 * 109.46801 * 300.00272 * 6 5 2 32 32 H 1.09001 * 109.46998 * 59.99868 * 6 5 2 33 33 H 0.96996 * 120.00202 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5301 -2.1638 1.2492 7 6 2.0330 -2.8744 2.4792 8 7 1.4284 -2.9327 3.6338 9 8 2.0811 -3.5772 4.4271 10 6 3.2110 -4.0104 3.8343 11 6 4.2235 -4.7858 4.4201 12 1 5.0876 -5.0735 3.8395 13 6 4.1131 -5.1877 5.7614 14 7 3.0688 -4.8405 6.4628 15 14 5.4605 -6.2204 6.5409 16 1 6.4779 -5.3274 7.1515 17 1 4.8724 -7.0909 7.5905 18 1 6.1024 -7.0636 5.5007 19 7 3.1743 -3.5611 2.5796 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6767 -1.7489 -1.2493 27 1 1.6766 -0.2074 -2.1393 28 1 3.1301 -0.7208 -1.2495 29 1 1.6768 -0.2074 2.1392 30 1 3.1301 -0.7216 1.2489 31 1 0.4401 -2.1638 1.2492 32 1 1.8934 -2.6776 0.3591 33 1 2.9923 -5.1184 7.3890 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300862521.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:12 Heat of formation + Delta-G solvation = -4.781075 kcal Electronic energy + Delta-G solvation = -15262.642937 eV Core-core repulsion = 12710.063454 eV Total energy + Delta-G solvation = -2552.579484 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.03353 -39.08966 -36.07638 -35.80723 -33.10303 -30.97913 -28.52125 -28.12788 -28.10127 -25.48996 -23.59508 -22.33252 -19.57720 -19.46851 -17.82561 -17.37557 -16.89190 -15.97577 -15.72558 -15.20929 -15.03398 -14.51895 -14.01308 -13.61140 -13.55521 -13.29708 -13.08723 -12.77450 -12.73531 -12.54467 -12.24877 -12.01019 -11.94919 -11.92952 -11.64111 -11.42878 -11.41895 -11.16306 -10.96245 -10.25610 -8.96271 -7.10560 0.98996 1.40318 1.55101 1.61068 2.02971 2.15116 3.00908 3.24646 3.49626 3.82987 3.91132 4.00999 4.04815 4.46004 4.52133 4.60365 4.64129 4.84366 4.85895 4.92828 4.94645 5.07400 5.09475 5.11140 5.16732 5.23709 5.36287 5.47907 5.55632 5.63063 5.87147 6.08125 6.30434 6.44619 8.06315 8.32366 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.061717 B = 0.005527 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.575926 B = 5064.473560 C = 5223.122288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.138 4.138 4 C -0.143 4.143 5 C -0.090 4.090 6 C -0.014 4.014 7 C 0.168 3.832 8 N -0.502 5.502 9 O 0.008 5.992 10 C 0.268 3.732 11 C -0.435 4.435 12 H 0.122 0.878 13 C 0.028 3.972 14 N -0.797 5.797 15 Si 1.023 2.977 16 H -0.253 1.253 17 H -0.258 1.258 18 H -0.248 1.248 19 N -0.640 5.640 20 H 0.049 0.951 21 H 0.074 0.926 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.098 5.460 -7.626 9.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.064 4.064 3 C -0.195 4.195 4 C -0.200 4.200 5 C -0.128 4.128 6 C -0.052 4.052 7 C -0.107 4.107 8 N -0.238 5.238 9 O -0.032 6.032 10 C 0.079 3.921 11 C -0.472 4.472 12 H 0.139 0.861 13 C -0.194 4.194 14 N -0.424 5.424 15 Si 0.839 3.161 16 H -0.177 1.177 17 H -0.182 1.182 18 H -0.171 1.171 19 N -0.385 5.385 20 H 0.068 0.932 21 H 0.093 0.907 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.795 5.839 -7.641 9.650 hybrid contribution 0.386 -0.521 0.813 1.040 sum -0.409 5.318 -6.828 8.664 Atomic orbital electron populations 1.21936 0.93827 1.02028 1.02235 1.20529 0.96321 0.95769 0.93796 1.21839 1.00869 0.94476 1.02313 1.21929 1.00902 1.00359 0.96774 1.21486 0.99868 0.93027 0.98466 1.20004 1.00502 0.94832 0.89893 1.25983 0.90350 0.98011 0.96325 1.74241 1.23364 1.22793 1.03376 1.85457 1.28371 1.53761 1.35636 1.24891 0.88099 0.92995 0.86093 1.19143 1.03256 1.27500 0.97344 0.86061 1.27424 0.99759 0.95907 0.96289 1.69696 1.27889 1.33852 1.11004 0.84597 0.75888 0.77408 0.78161 1.17712 1.18222 1.17084 1.72218 1.22761 1.26211 1.17335 0.93181 0.90703 0.92744 0.92985 0.90670 0.93080 0.92718 0.90750 0.93085 0.93633 0.93307 0.89429 0.89010 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.12 71.98 0.58 -2.60 16 2 C -0.06 -1.57 0.80 -52.18 -0.04 -1.62 16 3 C -0.14 -2.93 8.47 71.98 0.61 -2.32 16 4 C -0.14 -3.17 8.12 71.98 0.58 -2.59 16 5 C -0.09 -3.04 4.25 30.60 0.13 -2.91 16 6 C -0.01 -0.53 5.14 29.85 0.15 -0.38 16 7 C 0.17 8.87 7.43 138.61 1.03 9.90 16 8 N -0.50 -29.22 12.15 -56.62 -0.69 -29.91 16 9 O 0.01 0.53 9.74 64.21 0.63 1.15 16 10 C 0.27 16.14 7.82 85.06 0.66 16.80 16 11 C -0.44 -23.77 9.48 23.32 0.22 -23.55 16 12 H 0.12 6.17 7.85 -2.91 -0.02 6.15 16 13 C 0.03 1.36 5.50 85.43 0.47 1.83 16 14 N -0.80 -41.55 12.06 21.91 0.26 -41.28 16 15 Si 1.02 35.06 29.56 68.60 2.03 37.09 16 16 H -0.25 -8.23 7.11 99.48 0.71 -7.52 16 17 H -0.26 -8.23 7.11 99.48 0.71 -7.52 16 18 H -0.25 -8.11 7.11 99.48 0.71 -7.40 16 19 N -0.64 -36.97 11.61 -305.22 -3.54 -40.52 16 20 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 21 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 22 H 0.05 1.26 6.43 -2.39 -0.02 1.25 16 23 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.27 6.43 -2.39 -0.02 1.26 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.09 3.14 6.43 -2.39 -0.02 3.13 16 32 H 0.09 3.32 6.43 -2.39 -0.02 3.30 16 33 H 0.31 13.86 8.29 -92.71 -0.77 13.09 16 Total: -1.00 -67.61 276.72 4.19 -63.42 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 1.09 Total: 17.47 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 4.41 Total: -7.42 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -3.97 Total: -111.71 kcal Atomic # 8 Polarization: 0.53 SS G_CDS: 0.63 Total: 1.15 kcal Atomic # 14 Polarization: 35.06 SS G_CDS: 2.03 Total: 37.09 kcal Total: -67.61 4.19 -63.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300862521.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.639 kcal (2) G-P(sol) polarization free energy of solvation -67.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds