Wall clock time and date at job start Mon Mar 30 2020 03:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47289 * 2 1 4 4 N 1.40082 * 126.04008 * 269.97612 * 3 2 1 5 5 C 1.30834 * 108.20758 * 180.02562 * 4 3 2 6 6 C 1.50704 * 125.89824 * 179.97438 * 5 4 3 7 7 C 1.39867 * 108.20347 * 0.02562 * 5 4 3 8 8 C 1.50696 * 126.04245 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.47778 * 164.99841 * 8 7 5 10 10 O 1.42910 * 109.47017 * 44.99788 * 8 7 5 11 11 C 1.50701 * 109.47124 * 285.00157 * 8 7 5 12 12 H 1.07994 * 120.00098 * 359.97438 * 11 8 7 13 13 C 1.37880 * 120.00027 * 179.97438 * 11 8 7 14 14 N 1.31512 * 119.99910 * 359.97438 * 13 11 8 15 15 Si 1.86794 * 120.00112 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.47100 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47435 * 119.99897 * 15 13 11 18 18 H 1.48501 * 109.47312 * 240.00226 * 15 13 11 19 19 C 1.34954 * 126.03681 * 89.99858 * 3 2 1 20 20 C 1.50701 * 126.12392 * 359.71674 * 19 3 2 21 21 H 1.08992 * 109.47074 * 59.99650 * 1 2 3 22 22 H 1.09001 * 109.46941 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46920 * 300.00003 * 1 2 3 24 24 H 1.08995 * 109.47187 * 240.00047 * 2 1 3 25 25 H 1.09009 * 109.47240 * 120.00209 * 2 1 3 26 26 H 1.08996 * 109.47239 * 90.02330 * 6 5 4 27 27 H 1.08997 * 109.46892 * 210.02582 * 6 5 4 28 28 H 1.08995 * 109.46892 * 330.02457 * 6 5 4 29 29 H 0.96697 * 113.99649 * 300.00389 * 10 8 7 30 30 H 0.97006 * 120.00328 * 179.97438 * 14 13 11 31 31 H 1.09006 * 109.47001 * 90.02609 * 20 19 3 32 32 H 1.08999 * 109.46835 * 210.02376 * 20 19 3 33 33 H 1.08998 * 109.47331 * 330.02467 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2936 2.1581 -1.1327 5 6 2.7091 3.3322 -0.7320 6 6 3.1152 4.4773 -1.6236 7 6 2.7125 3.3406 0.6666 8 6 3.1216 4.4944 1.5454 9 1 2.7765 4.3159 2.5637 10 8 2.5383 5.7011 1.0494 11 6 4.6231 4.6229 1.5391 12 1 5.2213 3.9373 0.9574 13 6 5.2332 5.6157 2.2762 14 7 4.5047 6.4509 2.9842 15 14 7.0944 5.7744 2.2691 16 1 7.6777 4.7207 1.4004 17 1 7.4751 7.1123 1.7489 18 1 7.6100 5.6161 3.6527 19 6 2.2830 2.1297 1.0913 20 6 2.1234 1.6965 2.5258 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 2.2446 5.0967 -1.8388 27 1 3.8732 5.0780 -1.1208 28 1 3.5217 4.0855 -2.5559 29 1 2.8020 5.9229 0.1459 30 1 4.9339 7.1492 3.5030 31 1 3.0526 1.2460 2.8749 32 1 1.8856 2.5631 3.1427 33 1 1.3166 0.9671 2.5975 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306405522.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:54 Heat of formation + Delta-G solvation = -11.180979 kcal Electronic energy + Delta-G solvation = -15833.847232 eV Core-core repulsion = 13280.990227 eV Total energy + Delta-G solvation = -2552.857004 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.18936 -37.66474 -35.49051 -34.19973 -33.35776 -31.55897 -29.58031 -28.10859 -27.37617 -24.74157 -23.27981 -20.60612 -20.15928 -18.95617 -17.47683 -16.62091 -16.35696 -16.15441 -15.27274 -15.24036 -14.66949 -14.34565 -14.12687 -13.85029 -13.61514 -13.52426 -13.12072 -12.92661 -12.90234 -12.81150 -12.63402 -12.56303 -12.21607 -12.06270 -11.60940 -10.93999 -10.66501 -10.23596 -9.82202 -9.00661 -8.04810 -6.30405 1.00151 1.41126 1.43140 1.54881 1.74473 1.94988 2.45556 3.17667 3.64908 3.88234 4.11610 4.14350 4.25324 4.37181 4.41933 4.56025 4.72452 4.74541 4.79411 4.81033 4.89028 5.01827 5.03828 5.15343 5.22616 5.41031 5.69277 5.81411 5.97305 6.18360 6.36329 6.78893 6.92164 7.38875 7.59805 8.97273 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035360 B = 0.008404 C = 0.007960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.660639 B = 3331.056218 C = 3516.845244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 N -0.376 5.376 4 N -0.331 5.331 5 C 0.067 3.933 6 C -0.072 4.072 7 C -0.260 4.260 8 C 0.303 3.697 9 H 0.032 0.968 10 O -0.582 6.582 11 C -0.559 4.559 12 H 0.046 0.954 13 C 0.029 3.971 14 N -0.899 5.899 15 Si 0.954 3.046 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.278 1.278 19 C 0.069 3.931 20 C -0.081 4.081 21 H 0.044 0.956 22 H 0.107 0.893 23 H 0.055 0.945 24 H 0.097 0.903 25 H 0.113 0.887 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.354 0.646 30 H 0.262 0.738 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.984 -11.619 -4.163 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.001 3.999 3 N -0.160 5.160 4 N -0.155 5.155 5 C -0.098 4.098 6 C -0.131 4.131 7 C -0.271 4.271 8 C 0.244 3.756 9 H 0.050 0.950 10 O -0.388 6.388 11 C -0.597 4.597 12 H 0.064 0.936 13 C -0.173 4.173 14 N -0.537 5.537 15 Si 0.779 3.221 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.203 1.203 19 C -0.058 4.058 20 C -0.139 4.139 21 H 0.063 0.937 22 H 0.125 0.875 23 H 0.074 0.926 24 H 0.115 0.885 25 H 0.131 0.869 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.201 0.799 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.583 -12.378 -4.453 14.290 hybrid contribution 1.404 0.830 0.293 1.657 sum -4.179 -11.548 -4.160 12.966 Atomic orbital electron populations 1.22140 0.93442 1.04288 1.01977 1.21963 0.95960 0.76551 1.05448 1.48715 1.52290 1.12643 1.02356 1.77003 1.25066 1.04272 1.09111 1.22411 0.98682 0.94741 0.93974 1.20253 1.02082 0.93255 0.97471 1.21118 1.12299 0.98763 0.94903 1.17443 0.90524 0.77793 0.89800 0.95031 1.86499 1.73180 1.45384 1.33700 1.21811 0.92956 1.15264 1.29704 0.93602 1.25814 1.02298 0.95025 0.94138 1.70204 1.36692 1.17486 1.29269 0.85595 0.80513 0.78028 0.77943 1.19516 1.20248 1.20338 1.21171 1.00595 0.91962 0.92058 1.20439 1.03632 1.02585 0.87258 0.93684 0.87471 0.92598 0.88451 0.86852 0.89505 0.90591 0.90076 0.79910 0.92932 0.89711 0.91062 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 10.24 71.98 0.74 -2.33 16 2 C 0.12 2.75 6.78 86.38 0.59 3.34 16 3 N -0.38 -13.18 3.61 -334.69 -1.21 -14.39 16 4 N -0.33 -13.38 12.58 -47.38 -0.60 -13.98 16 5 C 0.07 2.86 7.16 43.10 0.31 3.17 16 6 C -0.07 -2.61 8.79 71.24 0.63 -1.99 16 7 C -0.26 -12.04 5.01 -20.15 -0.10 -12.14 16 8 C 0.30 16.17 2.99 29.10 0.09 16.25 16 9 H 0.03 1.84 6.81 -2.39 -0.02 1.83 16 10 O -0.58 -31.76 12.68 -148.98 -1.89 -33.65 16 11 C -0.56 -31.38 8.31 25.60 0.21 -31.16 16 12 H 0.05 2.61 7.74 -2.91 -0.02 2.58 16 13 C 0.03 1.64 5.40 84.66 0.46 2.10 16 14 N -0.90 -53.53 12.84 21.45 0.28 -53.25 16 15 Si 0.95 43.78 29.54 68.60 2.03 45.81 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 C 0.07 2.69 6.93 41.40 0.29 2.98 16 20 C -0.08 -2.49 9.64 71.24 0.69 -1.80 16 21 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.11 1.98 7.67 -2.38 -0.02 1.96 16 26 H 0.09 2.80 8.07 -2.39 -0.02 2.78 16 27 H 0.08 2.97 6.46 -2.39 -0.02 2.96 16 28 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.35 17.23 5.87 -74.06 -0.43 16.79 16 30 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 31 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 32 H 0.07 2.43 7.01 -2.39 -0.02 2.41 16 33 H 0.10 2.17 7.73 -2.39 -0.02 2.15 16 Total: -1.00 -71.33 278.34 3.17 -68.17 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.67 Total: 22.88 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 3.89 Total: -21.58 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -1.53 Total: -81.62 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -1.89 Total: -33.65 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -71.33 3.17 -68.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306405522.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.987 kcal (2) G-P(sol) polarization free energy of solvation -71.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds