Wall clock time and date at job start Mon Mar 30 2020 03:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.60189 * 2 1 4 4 N 1.47049 * 110.55022 * 237.21790 * 2 1 3 5 5 C 1.33945 * 109.18397 * 241.40967 * 4 2 1 6 6 O 1.21582 * 123.04631 * 179.97438 * 5 4 2 7 7 N 1.33954 * 113.91140 * 359.97438 * 5 4 2 8 8 C 1.47046 * 109.17971 * 0.02562 * 7 5 4 9 9 H 1.09004 * 110.54881 * 118.73765 * 8 7 5 10 10 C 1.53002 * 110.54803 * 241.40306 * 8 7 5 11 11 C 1.50703 * 109.47214 * 293.54617 * 10 8 7 12 12 C 1.30997 * 119.99715 * 126.34172 * 11 10 8 13 13 C 1.50704 * 120.00279 * 7.54166 * 12 11 10 14 14 C 1.50708 * 109.46941 * 127.61495 * 13 12 11 15 15 H 1.07998 * 119.99997 * 359.72744 * 14 13 12 16 16 C 1.37869 * 119.99737 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00115 * 359.72538 * 16 14 13 18 18 Si 1.86796 * 119.99939 * 179.72462 * 16 14 13 19 19 H 1.48498 * 109.47084 * 60.00120 * 18 16 14 20 20 H 1.48502 * 109.47243 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47280 * 300.00284 * 18 16 14 22 22 H 1.09000 * 109.47537 * 297.22536 * 1 2 3 23 23 H 1.08997 * 109.47367 * 57.22290 * 1 2 3 24 24 H 1.09000 * 109.47514 * 177.21937 * 1 2 3 25 25 H 0.97001 * 125.40915 * 61.40374 * 4 2 1 26 26 H 0.97003 * 125.40751 * 180.02562 * 7 5 4 27 27 H 1.09008 * 109.47020 * 173.54797 * 10 8 7 28 28 H 1.08993 * 109.47264 * 53.55128 * 10 8 7 29 29 H 1.07997 * 119.99981 * 306.34720 * 11 10 8 30 30 H 1.08005 * 120.00035 * 187.54568 * 12 11 10 31 31 H 1.09000 * 109.46624 * 7.61983 * 13 12 11 32 32 H 1.08988 * 109.47544 * 247.61682 * 13 12 11 33 33 H 0.97004 * 119.99809 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9135 1.0203 0.0000 4 7 2.0461 -0.7455 -1.1576 5 6 2.7675 -1.7875 -0.7240 6 8 3.3120 -2.5748 -1.4736 7 7 2.8347 -1.8837 0.6104 8 6 2.0711 -0.7810 1.2132 9 1 1.2514 -1.1691 1.8180 10 6 2.9865 0.1070 2.0584 11 6 3.4840 -0.6727 3.2483 12 6 4.7695 -0.7558 3.4859 13 6 5.7403 0.0633 2.6748 14 6 6.6403 0.8389 3.6019 15 1 6.5184 0.7512 4.6714 16 6 7.6153 1.6652 3.0847 17 7 7.7634 1.7724 1.7823 18 14 8.7258 2.6325 4.2338 19 1 9.4769 1.6923 5.1040 20 1 9.6824 3.4396 3.4346 21 1 7.9007 3.5349 5.0764 22 1 -0.3634 0.4701 0.9138 23 1 -0.3634 0.5563 -0.8640 24 1 -0.3634 -1.0264 -0.0499 25 1 1.8891 -0.5188 -2.0876 26 1 3.3114 -2.5714 1.1010 27 1 2.4303 0.9791 2.4023 28 1 3.8350 0.4316 1.4561 29 1 2.7806 -1.1630 3.9050 30 1 5.1338 -1.4114 4.2630 31 1 5.1887 0.7566 2.0398 32 1 6.3429 -0.5983 2.0527 33 1 8.4492 2.3540 1.4185 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308367309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:45 Heat of formation + Delta-G solvation = -15.531915 kcal Electronic energy + Delta-G solvation = -15260.695734 eV Core-core repulsion = 12707.650059 eV Total energy + Delta-G solvation = -2553.045675 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.93960 -36.85996 -35.32679 -33.19784 -32.36488 -30.96938 -28.86243 -26.77760 -23.65718 -22.65621 -21.50994 -21.26371 -17.82143 -17.34394 -16.40860 -16.14446 -15.64073 -14.81547 -14.52600 -14.37748 -14.10104 -13.35477 -13.09551 -12.71501 -12.48588 -12.19650 -12.08120 -11.60864 -11.39883 -10.95175 -10.79679 -10.59729 -10.19070 -9.97713 -9.45592 -9.24423 -9.18522 -8.75322 -8.42917 -7.95922 -6.03863 -4.07123 2.99984 3.12822 3.30908 3.35730 3.38478 3.44118 4.16423 4.37097 4.43899 4.84347 5.03265 5.29901 5.36640 5.38823 5.42083 5.71486 5.78362 5.84585 5.99695 6.02508 6.19678 6.60059 6.70150 7.19938 7.31552 7.40545 7.45523 7.62970 7.66569 7.88129 7.97604 8.36951 8.89189 8.98362 9.56389 11.06577 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.006075 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.713141 B = 4607.798936 C = 4772.133194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 H 0.094 0.906 4 N -0.739 5.739 5 C 0.702 3.298 6 O -0.599 6.599 7 N -0.726 5.726 8 C 0.133 3.867 9 H 0.087 0.913 10 C -0.103 4.103 11 C -0.226 4.226 12 C -0.093 4.093 13 C 0.030 3.970 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.425 0.575 26 H 0.429 0.571 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.035 0.965 32 H 0.027 0.973 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.025 -1.953 -1.408 15.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.112 0.888 4 N -0.401 5.401 5 C 0.400 3.600 6 O -0.478 6.478 7 N -0.387 5.387 8 C 0.027 3.973 9 H 0.104 0.896 10 C -0.140 4.140 11 C -0.244 4.244 12 C -0.111 4.111 13 C -0.006 4.006 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 H 0.092 0.908 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.265 0.735 26 H 0.271 0.729 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.647 -2.252 -1.908 14.942 hybrid contribution 0.771 0.512 0.636 1.123 sum -13.876 -1.740 -1.272 14.043 Atomic orbital electron populations 1.22171 0.94106 1.02678 1.02848 1.22040 0.94683 0.97176 0.84915 0.88778 1.45198 1.56254 1.29873 1.08805 1.15955 0.79228 0.81603 0.83170 1.90959 1.52741 1.46160 1.57921 1.45186 1.56626 1.31516 1.05405 1.22008 0.94133 0.87452 0.93697 0.89552 1.21194 1.00002 0.96851 0.95977 1.22248 0.96077 1.06194 0.99871 1.23429 0.95269 0.94898 0.97511 1.18550 0.93068 0.94006 0.94950 1.21053 1.15901 1.25667 0.92942 0.92687 1.25016 0.97395 0.96903 0.95083 1.69953 1.33847 1.38581 1.10845 0.86617 0.80434 0.80024 0.80696 1.20204 1.21236 1.20228 0.90830 0.91877 0.92056 0.73466 0.72940 0.90857 0.88697 0.88951 0.88997 0.94730 0.95537 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.41 37.15 0.35 -0.89 16 2 C 0.12 1.26 4.03 -67.06 -0.27 0.99 16 3 H 0.09 0.99 7.73 -51.93 -0.40 0.59 16 4 N -0.74 -9.51 6.03 -58.20 -0.35 -9.86 16 5 C 0.70 11.83 8.92 -88.39 -0.79 11.04 16 6 O -0.60 -12.65 18.05 5.29 0.10 -12.55 16 7 N -0.73 -10.78 5.83 -58.20 -0.34 -11.12 16 8 C 0.13 1.64 3.38 -67.06 -0.23 1.41 16 9 H 0.09 0.89 7.74 -51.93 -0.40 0.49 16 10 C -0.10 -1.55 4.86 -27.88 -0.14 -1.68 16 11 C -0.23 -3.75 9.29 -36.02 -0.33 -4.08 16 12 C -0.09 -1.89 9.45 -36.02 -0.34 -2.23 16 13 C 0.03 0.77 5.06 -29.03 -0.15 0.62 16 14 C -0.52 -14.47 9.09 -34.44 -0.31 -14.78 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 18 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.42 4.63 8.96 -40.82 -0.37 4.26 16 26 H 0.43 6.28 8.93 -40.82 -0.36 5.92 16 27 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 28 H 0.09 1.78 5.28 -51.93 -0.27 1.51 16 29 H 0.09 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 31 H 0.03 0.91 5.30 -51.93 -0.28 0.63 16 32 H 0.03 0.74 8.14 -51.94 -0.42 0.32 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 279.81 15.07 4.22 4.22 Total: -1.00 -33.10 279.81 -7.55 -40.65 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.58 Total: 6.16 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -2.30 Total: -8.06 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.05 Total: -46.88 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.10 Total: -12.55 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.10 -7.55 -40.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308367309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.120 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds