Wall clock time and date at job start Mon Mar 30 2020 03:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.60189 * 2 1 4 4 N 1.47049 * 110.55022 * 237.21790 * 2 1 3 5 5 C 1.33945 * 109.18397 * 241.40967 * 4 2 1 6 6 O 1.21582 * 123.04631 * 179.97438 * 5 4 2 7 7 N 1.33954 * 113.91140 * 359.97438 * 5 4 2 8 8 C 1.47046 * 109.17971 * 0.02562 * 7 5 4 9 9 H 1.09004 * 110.54881 * 118.73765 * 8 7 5 10 10 C 1.53002 * 110.54803 * 241.40306 * 8 7 5 11 11 C 1.50703 * 109.47214 * 293.54617 * 10 8 7 12 12 C 1.30997 * 119.99715 * 126.34172 * 11 10 8 13 13 C 1.50704 * 120.00279 * 7.54166 * 12 11 10 14 14 C 1.50708 * 109.46941 * 127.61495 * 13 12 11 15 15 H 1.07998 * 119.99997 * 359.72744 * 14 13 12 16 16 C 1.37869 * 119.99737 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00115 * 359.72538 * 16 14 13 18 18 Si 1.86796 * 119.99939 * 179.72462 * 16 14 13 19 19 H 1.48498 * 109.47084 * 60.00120 * 18 16 14 20 20 H 1.48502 * 109.47243 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47280 * 300.00284 * 18 16 14 22 22 H 1.09000 * 109.47537 * 297.22536 * 1 2 3 23 23 H 1.08997 * 109.47367 * 57.22290 * 1 2 3 24 24 H 1.09000 * 109.47514 * 177.21937 * 1 2 3 25 25 H 0.97001 * 125.40915 * 61.40374 * 4 2 1 26 26 H 0.97003 * 125.40751 * 180.02562 * 7 5 4 27 27 H 1.09008 * 109.47020 * 173.54797 * 10 8 7 28 28 H 1.08993 * 109.47264 * 53.55128 * 10 8 7 29 29 H 1.07997 * 119.99981 * 306.34720 * 11 10 8 30 30 H 1.08005 * 120.00035 * 187.54568 * 12 11 10 31 31 H 1.09000 * 109.46624 * 7.61983 * 13 12 11 32 32 H 1.08988 * 109.47544 * 247.61682 * 13 12 11 33 33 H 0.97004 * 119.99809 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9135 1.0203 0.0000 4 7 2.0461 -0.7455 -1.1576 5 6 2.7675 -1.7875 -0.7240 6 8 3.3120 -2.5748 -1.4736 7 7 2.8347 -1.8837 0.6104 8 6 2.0711 -0.7810 1.2132 9 1 1.2514 -1.1691 1.8180 10 6 2.9865 0.1070 2.0584 11 6 3.4840 -0.6727 3.2483 12 6 4.7695 -0.7558 3.4859 13 6 5.7403 0.0633 2.6748 14 6 6.6403 0.8389 3.6019 15 1 6.5184 0.7512 4.6714 16 6 7.6153 1.6652 3.0847 17 7 7.7634 1.7724 1.7823 18 14 8.7258 2.6325 4.2338 19 1 9.4769 1.6923 5.1040 20 1 9.6824 3.4396 3.4346 21 1 7.9007 3.5349 5.0764 22 1 -0.3634 0.4701 0.9138 23 1 -0.3634 0.5563 -0.8640 24 1 -0.3634 -1.0264 -0.0499 25 1 1.8891 -0.5188 -2.0876 26 1 3.3114 -2.5714 1.1010 27 1 2.4303 0.9791 2.4023 28 1 3.8350 0.4316 1.4561 29 1 2.7806 -1.1630 3.9050 30 1 5.1338 -1.4114 4.2630 31 1 5.1887 0.7566 2.0398 32 1 6.3429 -0.5983 2.0527 33 1 8.4492 2.3540 1.4185 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308367309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:45 Heat of formation + Delta-G solvation = -40.503953 kcal Electronic energy + Delta-G solvation = -15261.778603 eV Core-core repulsion = 12707.650059 eV Total energy + Delta-G solvation = -2554.128544 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.09452 -38.22403 -36.85030 -34.81884 -33.90457 -32.13964 -30.28049 -28.36850 -25.12553 -24.28191 -22.71451 -22.26914 -19.23792 -18.78638 -18.34638 -17.32723 -16.84079 -16.50878 -16.15893 -15.56888 -15.29281 -14.68593 -14.43852 -14.13644 -13.80809 -13.59091 -13.35388 -12.95117 -12.76898 -12.46145 -12.39733 -12.25061 -11.79969 -11.43165 -11.35480 -11.02353 -10.60840 -10.44443 -9.85125 -9.49288 -8.20025 -6.32004 1.38419 1.42081 1.49577 1.59065 1.95451 2.16232 2.41638 3.12079 3.13296 3.41359 3.95783 4.12971 4.26961 4.39191 4.44926 4.63773 4.75552 4.93212 5.01474 5.06656 5.10327 5.30284 5.38673 5.39900 5.49983 5.78435 5.91062 6.03017 6.20144 6.35103 6.36893 6.50358 6.84970 7.36749 7.64143 8.90190 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.006075 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.713141 B = 4607.798936 C = 4772.133194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.117 3.883 3 H 0.098 0.902 4 N -0.729 5.729 5 C 0.689 3.311 6 O -0.652 6.652 7 N -0.728 5.728 8 C 0.137 3.863 9 H 0.125 0.875 10 C -0.105 4.105 11 C -0.177 4.177 12 C -0.140 4.140 13 C 0.039 3.961 14 C -0.537 4.537 15 H 0.059 0.941 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.264 1.264 22 H 0.095 0.905 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.433 0.567 26 H 0.427 0.573 27 H 0.101 0.899 28 H 0.051 0.949 29 H 0.134 0.866 30 H 0.098 0.902 31 H 0.021 0.979 32 H -0.018 1.018 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.336 -1.086 0.226 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.012 3.988 3 H 0.116 0.884 4 N -0.391 5.391 5 C 0.388 3.612 6 O -0.535 6.535 7 N -0.388 5.388 8 C 0.032 3.968 9 H 0.142 0.858 10 C -0.143 4.143 11 C -0.194 4.194 12 C -0.159 4.159 13 C 0.003 3.997 14 C -0.575 4.575 15 H 0.077 0.923 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.188 1.188 22 H 0.114 0.886 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.275 0.725 26 H 0.268 0.732 27 H 0.120 0.880 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.116 0.884 31 H 0.039 0.961 32 H 0.000 1.000 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.000 -1.352 -0.246 17.055 hybrid contribution 1.396 0.255 0.106 1.423 sum -15.603 -1.098 -0.140 15.643 Atomic orbital electron populations 1.22125 0.90946 1.03114 1.04659 1.22270 0.96959 0.96570 0.83020 0.88410 1.45216 1.55132 1.28702 1.10056 1.16301 0.79399 0.82004 0.83536 1.90908 1.55012 1.48329 1.59276 1.45293 1.56542 1.31967 1.04983 1.22207 0.93890 0.86326 0.94353 0.85784 1.21222 0.99419 0.98369 0.95318 1.22692 0.95184 1.02658 0.98916 1.23062 0.95841 0.97655 0.99301 1.18320 0.93333 0.93507 0.94562 1.21545 1.16530 1.25858 0.93574 0.92295 1.25981 0.99083 0.98074 0.96676 1.70102 1.34744 1.39574 1.12931 0.85491 0.78361 0.78586 0.78563 1.19360 1.20927 1.18841 0.88578 0.90614 0.92219 0.72504 0.73170 0.88038 0.93004 0.84784 0.88410 0.96103 1.00023 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.41 71.98 0.68 -1.02 16 2 C 0.12 2.18 4.03 45.26 0.18 2.36 16 3 H 0.10 1.81 7.73 -2.39 -0.02 1.79 16 4 N -0.73 -18.03 6.03 -456.79 -2.75 -20.78 16 5 C 0.69 23.32 8.92 179.57 1.60 24.92 16 6 O -0.65 -28.48 18.05 -3.97 -0.07 -28.55 16 7 N -0.73 -21.05 5.83 -456.78 -2.66 -23.71 16 8 C 0.14 2.98 3.38 45.26 0.15 3.13 16 9 H 0.12 1.89 7.74 -2.38 -0.02 1.87 16 10 C -0.11 -2.95 4.86 29.85 0.15 -2.81 16 11 C -0.18 -5.42 9.29 25.65 0.24 -5.18 16 12 C -0.14 -5.69 9.45 25.65 0.24 -5.45 16 13 C 0.04 2.07 5.06 29.11 0.15 2.22 16 14 C -0.54 -30.73 9.09 25.60 0.23 -30.49 16 15 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 16 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 17 N -0.93 -57.45 13.29 21.44 0.28 -57.17 16 18 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 22 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.43 9.07 8.96 -92.71 -0.83 8.24 16 26 H 0.43 12.42 8.93 -92.71 -0.83 11.59 16 27 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 28 H 0.05 1.96 5.28 -2.39 -0.01 1.95 16 29 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.10 3.78 8.06 -2.91 -0.02 3.76 16 31 H 0.02 1.15 5.30 -2.39 -0.01 1.14 16 32 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 33 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -75.67 279.81 0.37 -75.30 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -0.54 Total: 20.41 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 4.08 Total: -11.88 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -5.13 Total: -101.66 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.07 Total: -28.55 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -75.67 0.37 -75.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308367309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.794 kcal (2) G-P(sol) polarization free energy of solvation -75.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds