Wall clock time and date at job start Mon Mar 30 2020 03:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.60991 * 2 1 4 4 N 1.47063 * 110.54889 * 237.22320 * 2 1 3 5 5 C 1.33947 * 109.17888 * 241.40795 * 4 2 1 6 6 O 1.21582 * 123.04202 * 179.97438 * 5 4 2 7 7 N 1.33952 * 113.91702 * 359.97438 * 5 4 2 8 8 C 1.47059 * 109.17989 * 0.02562 * 7 5 4 9 9 H 1.08993 * 110.67288 * 118.65399 * 8 7 5 10 10 C 1.50702 * 110.54812 * 241.40766 * 8 7 5 11 11 C 1.31000 * 119.99428 * 240.86250 * 10 8 7 12 12 C 1.50703 * 120.00433 * 7.45588 * 11 10 8 13 13 C 1.53000 * 109.47058 * 127.21206 * 12 11 10 14 14 C 1.50700 * 109.46702 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00252 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99670 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00145 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99800 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47268 * 59.99693 * 18 16 14 20 20 H 1.48498 * 109.46881 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47105 * 299.99804 * 18 16 14 22 22 H 1.09003 * 109.47027 * 297.22346 * 1 2 3 23 23 H 1.09000 * 109.46694 * 57.21943 * 1 2 3 24 24 H 1.08999 * 109.47250 * 177.21513 * 1 2 3 25 25 H 0.96999 * 125.41018 * 61.40546 * 4 2 1 26 26 H 0.96998 * 125.41459 * 179.97438 * 7 5 4 27 27 H 1.07993 * 120.00270 * 60.85894 * 10 8 7 28 28 H 1.07999 * 119.99773 * 187.45826 * 11 10 8 29 29 H 1.09000 * 109.46943 * 7.21033 * 12 11 10 30 30 H 1.09002 * 109.46845 * 247.21195 * 12 11 10 31 31 H 1.08993 * 109.46966 * 300.00247 * 13 12 11 32 32 H 1.08998 * 109.46873 * 60.00152 * 13 12 11 33 33 H 0.97005 * 120.00267 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9137 1.0202 0.0000 4 7 2.0462 -0.7455 -1.1578 5 6 2.7676 -1.7875 -0.7242 6 8 3.3121 -2.5747 -1.4739 7 7 2.8348 -1.8838 0.6102 8 6 2.0711 -0.7811 1.2132 9 1 1.2501 -1.1669 1.8173 10 6 2.9729 0.0936 2.0456 11 6 2.7480 0.2326 3.3287 12 6 1.6962 -0.6085 4.0050 13 6 2.3072 -1.3097 5.2197 14 6 1.2552 -2.1502 5.8963 15 1 0.2510 -2.1809 5.4998 16 6 1.5743 -2.8794 7.0222 17 7 2.7969 -2.8417 7.5053 18 14 0.2704 -3.9218 7.8604 19 1 -0.2385 -4.9395 6.9063 20 1 0.8635 -4.6024 9.0396 21 1 -0.8500 -3.0528 8.3015 22 1 -0.3633 0.4701 0.9139 23 1 -0.3633 0.5564 -0.8640 24 1 -0.3634 -1.0264 -0.0499 25 1 1.8892 -0.5187 -2.0878 26 1 3.3109 -2.5719 1.1008 27 1 3.8043 0.6057 1.5845 28 1 3.3165 0.9501 3.9019 29 1 1.3222 -1.3551 3.3044 30 1 0.8740 0.0295 4.3292 31 1 3.1294 -1.9475 4.8955 32 1 2.6811 -0.5630 5.9203 33 1 3.0215 -3.3550 8.2972 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308367979.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:47 Heat of formation + Delta-G solvation = -16.014830 kcal Electronic energy + Delta-G solvation = -15097.868021 eV Core-core repulsion = 12544.801405 eV Total energy + Delta-G solvation = -2553.066616 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.04232 -37.06764 -35.31334 -33.29822 -32.62781 -30.79133 -29.55137 -26.04002 -24.59275 -21.86996 -21.61458 -21.29158 -18.67809 -17.27370 -16.49786 -16.20482 -15.70021 -15.08618 -14.49148 -14.33759 -14.25733 -13.71039 -13.01223 -12.86046 -12.46974 -12.20780 -11.94053 -11.62495 -11.33686 -11.02178 -10.78616 -10.58640 -10.15004 -10.06220 -9.59702 -9.34053 -9.17201 -8.78489 -8.58571 -8.39435 -6.05486 -4.08887 2.32633 3.08597 3.28238 3.29898 3.35037 3.36842 4.10041 4.40973 4.43456 4.77070 4.96795 5.23168 5.26881 5.30731 5.46043 5.65660 5.71945 5.83856 5.94664 6.10850 6.32265 6.49592 6.72696 6.98825 7.07958 7.12705 7.36166 7.53579 7.59244 7.72450 7.93156 8.33854 8.76144 8.97753 9.55815 11.05586 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034765 B = 0.005586 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.204355 B = 5011.715908 C = 5092.463284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.125 3.875 3 H 0.092 0.908 4 N -0.740 5.740 5 C 0.700 3.300 6 O -0.601 6.601 7 N -0.728 5.728 8 C 0.150 3.850 9 H 0.110 0.890 10 C -0.218 4.218 11 C -0.091 4.091 12 C -0.104 4.104 13 C 0.028 3.972 14 C -0.525 4.525 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.424 0.576 26 H 0.431 0.569 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 8.155 -12.502 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 H 0.110 0.890 4 N -0.403 5.403 5 C 0.399 3.601 6 O -0.480 6.480 7 N -0.389 5.389 8 C 0.045 3.955 9 H 0.128 0.872 10 C -0.237 4.237 11 C -0.110 4.110 12 C -0.141 4.141 13 C -0.009 4.009 14 C -0.563 4.563 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.265 0.735 26 H 0.273 0.727 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.267 7.682 -12.724 15.218 hybrid contribution -0.442 -0.634 0.518 0.930 sum -3.709 7.048 -12.205 14.574 Atomic orbital electron populations 1.22188 0.93803 1.03072 1.03021 1.21981 0.95007 0.96682 0.84388 0.89044 1.45252 1.56151 1.30008 1.08848 1.15991 0.79382 0.81567 0.83190 1.90960 1.53095 1.46026 1.57941 1.45349 1.56728 1.31451 1.05384 1.21304 0.94390 0.86362 0.93460 0.87228 1.22658 1.01628 1.03864 0.95572 1.23365 0.97337 0.95842 0.94483 1.21139 0.96344 0.97279 0.99345 1.19029 0.96152 0.95010 0.90752 1.21194 0.96593 1.27460 1.11032 0.92684 1.25018 0.95355 0.96803 0.97161 1.69947 1.18455 1.41698 1.23217 0.86659 0.81788 0.80558 0.79016 1.20221 1.21255 1.20203 0.90477 0.91886 0.91773 0.73490 0.72731 0.87507 0.87244 0.91945 0.91798 0.96483 0.96438 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.41 37.16 0.35 -1.03 16 2 C 0.13 1.27 4.02 -67.05 -0.27 1.00 16 3 H 0.09 0.81 7.72 -51.93 -0.40 0.41 16 4 N -0.74 -8.51 6.03 -58.19 -0.35 -8.86 16 5 C 0.70 10.86 8.92 -88.39 -0.79 10.08 16 6 O -0.60 -11.75 18.05 5.29 0.10 -11.65 16 7 N -0.73 -10.47 6.01 -59.32 -0.36 -10.83 16 8 C 0.15 1.90 3.44 -68.20 -0.23 1.66 16 9 H 0.11 1.46 4.87 -51.93 -0.25 1.21 16 10 C -0.22 -2.89 8.98 -36.02 -0.32 -3.21 16 11 C -0.09 -1.38 9.51 -36.02 -0.34 -1.72 16 12 C -0.10 -1.90 5.28 -27.88 -0.15 -2.05 16 13 C 0.03 0.67 4.96 -27.88 -0.14 0.53 16 14 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.42 3.95 8.96 -40.82 -0.37 3.59 16 26 H 0.43 6.19 8.96 -40.82 -0.37 5.83 16 27 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.06 1.10 5.25 -51.93 -0.27 0.83 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 280.10 15.07 4.22 4.22 Total: -1.00 -32.15 280.10 -7.56 -39.72 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.58 Total: 4.61 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.30 Total: -7.75 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.03 Total: -45.28 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.10 Total: -11.65 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.15 -7.56 -39.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308367979.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.700 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds