Wall clock time and date at job start Mon Mar 30 2020 03:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 110.49263 * 2 1 4 4 N 1.47052 * 110.54540 * 237.29902 * 2 1 3 5 5 C 1.33952 * 109.17769 * 241.26372 * 4 2 1 6 6 O 1.21591 * 123.04227 * 179.73601 * 5 4 2 7 7 N 1.33949 * 113.91545 * 359.97438 * 5 4 2 8 8 C 1.47051 * 109.18061 * 0.02562 * 7 5 4 9 9 H 1.09005 * 110.54381 * 241.40122 * 8 7 5 10 10 C 1.50699 * 110.67297 * 118.65576 * 8 7 5 11 11 C 1.30994 * 120.00245 * 132.38774 * 10 8 7 12 12 C 1.50695 * 120.00005 * 7.44261 * 11 10 8 13 13 C 1.53002 * 109.47256 * 125.88421 * 12 11 10 14 14 C 1.50702 * 109.46985 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00302 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99445 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00459 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99569 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47277 * 60.00201 * 18 16 14 20 20 H 1.48505 * 109.47141 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46906 * 299.99669 * 18 16 14 22 22 H 1.09001 * 109.46975 * 181.24987 * 1 2 3 23 23 H 1.09000 * 109.47024 * 301.24753 * 1 2 3 24 24 H 1.09000 * 109.47068 * 61.24721 * 1 2 3 25 25 H 0.96989 * 125.41254 * 61.26424 * 4 2 1 26 26 H 0.97003 * 125.40915 * 180.02562 * 7 5 4 27 27 H 1.08003 * 120.00012 * 312.37720 * 10 8 7 28 28 H 1.08003 * 120.00294 * 187.44404 * 11 10 8 29 29 H 1.09000 * 109.47597 * 245.88435 * 12 11 10 30 30 H 1.09000 * 109.47258 * 5.88321 * 12 11 10 31 31 H 1.08993 * 109.47201 * 299.99948 * 13 12 11 32 32 H 1.08997 * 109.46866 * 60.00271 * 13 12 11 33 33 H 0.96996 * 119.99831 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9117 1.0210 0.0000 4 7 2.0462 -0.7439 -1.1587 5 6 2.7702 -1.7847 -0.7265 6 8 3.3118 -2.5730 -1.4773 7 7 2.8393 -1.8814 0.6077 8 6 2.0744 -0.7805 1.2122 9 1 2.7262 -0.1470 1.8138 10 6 0.9412 -1.3166 2.0487 11 6 0.7436 -0.8532 3.2579 12 6 1.5383 0.3283 3.7513 13 6 0.5821 1.4144 4.2483 14 6 1.3769 2.5957 4.7422 15 1 2.4560 2.5738 4.7058 16 6 0.7262 3.7040 5.2417 17 7 -0.5878 3.7301 5.2875 18 14 1.7114 5.1686 5.8534 19 1 2.5378 5.7076 4.7436 20 1 0.7834 6.2222 6.3370 21 1 2.5960 4.7399 6.9664 22 1 -0.3633 -1.0274 0.0224 23 1 -0.3633 0.5331 0.8786 24 1 -0.3633 0.4943 -0.9010 25 1 1.8875 -0.5170 -2.0883 26 1 3.3180 -2.5685 1.0974 27 1 0.2920 -2.0827 1.6512 28 1 0.0111 -1.3179 3.9013 29 1 2.1873 0.0140 4.5686 30 1 2.1453 0.7236 2.9368 31 1 -0.0669 1.7289 3.4310 32 1 -0.0249 1.0192 5.0628 33 1 -1.0455 4.5099 5.6385 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308367981.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:49 Heat of formation + Delta-G solvation = -14.042841 kcal Electronic energy + Delta-G solvation = -15224.060618 eV Core-core repulsion = 12671.079514 eV Total energy + Delta-G solvation = -2552.981104 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.09042 -37.19803 -35.20058 -33.29960 -32.76962 -30.80588 -29.15329 -25.90210 -24.92830 -21.93006 -21.67451 -21.10879 -18.29590 -17.75617 -16.38853 -16.14666 -15.57591 -15.18289 -14.50450 -14.39153 -14.20379 -13.61932 -13.16748 -12.78770 -12.32490 -12.02239 -11.87397 -11.60941 -11.15872 -11.05160 -10.81512 -10.57617 -10.18908 -10.02649 -9.62197 -9.32854 -9.17746 -8.75219 -8.58967 -8.39436 -6.06945 -4.10100 2.34850 3.06629 3.24717 3.28675 3.33895 3.35903 4.08058 4.40224 4.52771 4.82547 5.07617 5.29181 5.32012 5.40204 5.61889 5.69521 5.85923 5.91559 6.09466 6.25656 6.35500 6.50982 6.73539 6.96998 7.07054 7.12591 7.31864 7.49626 7.58523 7.71847 7.92080 8.33110 8.72161 8.96662 9.54690 11.04032 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.042117 B = 0.005569 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.649980 B = 5026.782736 C = 5097.624661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 H 0.094 0.906 4 N -0.738 5.738 5 C 0.701 3.299 6 O -0.603 6.603 7 N -0.731 5.731 8 C 0.152 3.848 9 H 0.108 0.892 10 C -0.209 4.209 11 C -0.099 4.099 12 C -0.103 4.103 13 C 0.029 3.971 14 C -0.524 4.524 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.057 0.943 25 H 0.425 0.575 26 H 0.426 0.574 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 -6.965 -7.806 10.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.018 3.982 3 H 0.112 0.888 4 N -0.400 5.400 5 C 0.400 3.600 6 O -0.483 6.483 7 N -0.392 5.392 8 C 0.047 3.953 9 H 0.126 0.874 10 C -0.228 4.228 11 C -0.118 4.118 12 C -0.140 4.140 13 C -0.008 4.008 14 C -0.563 4.563 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.080 0.920 23 H 0.102 0.898 24 H 0.076 0.924 25 H 0.266 0.734 26 H 0.268 0.732 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.133 -7.224 -8.123 11.078 hybrid contribution 0.364 0.758 0.325 0.902 sum 2.497 -6.466 -7.798 10.433 Atomic orbital electron populations 1.22152 0.93461 1.02799 1.03086 1.22010 0.95779 0.96492 0.83912 0.88827 1.45287 1.55549 1.30067 1.09084 1.15962 0.79372 0.81613 0.83091 1.90956 1.53472 1.46042 1.57853 1.45256 1.55993 1.32437 1.05528 1.21206 0.92675 0.87646 0.93786 0.87436 1.22548 0.99926 1.04153 0.96145 1.23289 0.98021 0.95396 0.95112 1.21104 0.98810 0.93919 1.00135 1.19018 0.94041 0.91532 0.96205 1.21205 0.93034 1.00560 1.41455 0.92707 1.25005 0.94848 0.98582 0.95825 1.69944 1.07133 1.29978 1.46279 0.86677 0.79878 0.82293 0.79272 1.20217 1.21275 1.20235 0.91992 0.89808 0.92360 0.73407 0.73247 0.87447 0.87330 0.92013 0.92057 0.96392 0.96483 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 8.43 37.16 0.31 -1.45 16 2 C 0.12 1.45 4.38 -67.05 -0.29 1.16 16 3 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 4 N -0.74 -8.95 6.03 -58.19 -0.35 -9.30 16 5 C 0.70 10.50 8.92 -88.39 -0.79 9.71 16 6 O -0.60 -11.32 18.05 5.29 0.10 -11.22 16 7 N -0.73 -9.39 6.02 -59.33 -0.36 -9.75 16 8 C 0.15 1.91 3.67 -68.21 -0.25 1.66 16 9 H 0.11 1.40 5.46 -51.93 -0.28 1.12 16 10 C -0.21 -2.70 6.98 -36.03 -0.25 -2.95 16 11 C -0.10 -1.47 9.51 -36.03 -0.34 -1.81 16 12 C -0.10 -1.84 5.26 -27.88 -0.15 -1.99 16 13 C 0.03 0.69 4.96 -27.88 -0.14 0.55 16 14 C -0.52 -13.93 9.11 -34.44 -0.31 -14.24 16 15 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 18 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H 0.06 0.70 6.97 -51.93 -0.36 0.34 16 23 H 0.08 1.06 7.76 -51.93 -0.40 0.66 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.43 4.32 8.96 -40.82 -0.37 3.96 16 26 H 0.43 4.84 8.96 -40.82 -0.37 4.48 16 27 H 0.11 1.33 7.39 -52.48 -0.39 0.94 16 28 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.04 5.30 -51.93 -0.28 0.77 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 276.54 15.07 4.17 4.17 Total: -1.00 -31.11 276.54 -7.56 -38.67 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.52 Total: 4.54 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -2.31 Total: -7.85 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.03 Total: -44.06 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.10 Total: -11.22 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.11 -7.56 -38.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308367981.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.624 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds