Wall clock time and date at job start Mon Mar 30 2020 03:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 110.49263 * 2 1 4 4 N 1.47052 * 110.54540 * 237.29902 * 2 1 3 5 5 C 1.33952 * 109.17769 * 241.26372 * 4 2 1 6 6 O 1.21591 * 123.04227 * 179.73601 * 5 4 2 7 7 N 1.33949 * 113.91545 * 359.97438 * 5 4 2 8 8 C 1.47051 * 109.18061 * 0.02562 * 7 5 4 9 9 H 1.09005 * 110.54381 * 241.40122 * 8 7 5 10 10 C 1.50699 * 110.67297 * 118.65576 * 8 7 5 11 11 C 1.30994 * 120.00245 * 132.38774 * 10 8 7 12 12 C 1.50695 * 120.00005 * 7.44261 * 11 10 8 13 13 C 1.53002 * 109.47256 * 125.88421 * 12 11 10 14 14 C 1.50702 * 109.46985 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00302 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99445 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00459 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99569 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47277 * 60.00201 * 18 16 14 20 20 H 1.48505 * 109.47141 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46906 * 299.99669 * 18 16 14 22 22 H 1.09001 * 109.46975 * 181.24987 * 1 2 3 23 23 H 1.09000 * 109.47024 * 301.24753 * 1 2 3 24 24 H 1.09000 * 109.47068 * 61.24721 * 1 2 3 25 25 H 0.96989 * 125.41254 * 61.26424 * 4 2 1 26 26 H 0.97003 * 125.40915 * 180.02562 * 7 5 4 27 27 H 1.08003 * 120.00012 * 312.37720 * 10 8 7 28 28 H 1.08003 * 120.00294 * 187.44404 * 11 10 8 29 29 H 1.09000 * 109.47597 * 245.88435 * 12 11 10 30 30 H 1.09000 * 109.47258 * 5.88321 * 12 11 10 31 31 H 1.08993 * 109.47201 * 299.99948 * 13 12 11 32 32 H 1.08997 * 109.46866 * 60.00271 * 13 12 11 33 33 H 0.96996 * 119.99831 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9117 1.0210 0.0000 4 7 2.0462 -0.7439 -1.1587 5 6 2.7702 -1.7847 -0.7265 6 8 3.3118 -2.5730 -1.4773 7 7 2.8393 -1.8814 0.6077 8 6 2.0744 -0.7805 1.2122 9 1 2.7262 -0.1470 1.8138 10 6 0.9412 -1.3166 2.0487 11 6 0.7436 -0.8532 3.2579 12 6 1.5383 0.3283 3.7513 13 6 0.5821 1.4144 4.2483 14 6 1.3769 2.5957 4.7422 15 1 2.4560 2.5738 4.7058 16 6 0.7262 3.7040 5.2417 17 7 -0.5878 3.7301 5.2875 18 14 1.7114 5.1686 5.8534 19 1 2.5378 5.7076 4.7436 20 1 0.7834 6.2222 6.3370 21 1 2.5960 4.7399 6.9664 22 1 -0.3633 -1.0274 0.0224 23 1 -0.3633 0.5331 0.8786 24 1 -0.3633 0.4943 -0.9010 25 1 1.8875 -0.5170 -2.0883 26 1 3.3180 -2.5685 1.0974 27 1 0.2920 -2.0827 1.6512 28 1 0.0111 -1.3179 3.9013 29 1 2.1873 0.0140 4.5686 30 1 2.1453 0.7236 2.9368 31 1 -0.0669 1.7289 3.4310 32 1 -0.0249 1.0192 5.0628 33 1 -1.0455 4.5099 5.6385 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308367981.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:48 Heat of formation + Delta-G solvation = -36.283570 kcal Electronic energy + Delta-G solvation = -15225.025049 eV Core-core repulsion = 12671.079514 eV Total energy + Delta-G solvation = -2553.945534 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.18301 -38.43306 -36.60382 -34.88040 -34.09980 -32.20329 -30.53018 -27.20320 -26.47020 -23.33470 -22.75864 -22.53466 -19.49721 -18.90216 -18.33308 -17.23962 -16.78153 -16.54822 -16.23970 -15.49870 -15.28927 -14.84232 -14.67868 -14.27988 -13.68729 -13.41319 -13.32590 -12.87323 -12.76190 -12.52500 -12.23851 -12.10293 -11.69531 -11.43099 -11.36416 -11.07569 -10.51957 -10.47601 -9.85776 -9.73337 -8.14690 -6.24647 1.20548 1.44969 1.46073 1.53875 2.03527 2.08457 2.45432 3.05620 3.19435 3.51624 3.76657 4.04464 4.31029 4.33074 4.46542 4.61809 4.74498 4.89552 4.95782 5.02313 5.17435 5.22743 5.35343 5.58008 5.69264 5.74780 5.92239 5.97511 6.04219 6.30930 6.35608 6.41163 6.93292 7.44696 7.62005 8.96376 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.042117 B = 0.005569 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.649980 B = 5026.782736 C = 5097.624661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.124 3.876 3 H 0.104 0.896 4 N -0.725 5.725 5 C 0.695 3.305 6 O -0.644 6.644 7 N -0.722 5.722 8 C 0.148 3.852 9 H 0.108 0.892 10 C -0.177 4.177 11 C -0.117 4.117 12 C -0.089 4.089 13 C 0.032 3.968 14 C -0.540 4.540 15 H 0.061 0.939 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.956 3.044 19 H -0.266 1.266 20 H -0.287 1.287 21 H -0.270 1.270 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.435 0.565 26 H 0.433 0.567 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.060 0.940 30 H 0.073 0.927 31 H -0.002 1.002 32 H -0.011 1.011 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.759 -6.798 -8.334 11.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.019 3.981 3 H 0.122 0.878 4 N -0.387 5.387 5 C 0.394 3.606 6 O -0.527 6.527 7 N -0.382 5.382 8 C 0.043 3.957 9 H 0.125 0.875 10 C -0.196 4.196 11 C -0.136 4.136 12 C -0.125 4.125 13 C -0.005 4.005 14 C -0.579 4.579 15 H 0.079 0.921 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.782 3.218 19 H -0.191 1.191 20 H -0.213 1.213 21 H -0.195 1.195 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.277 0.723 26 H 0.275 0.725 27 H 0.139 0.861 28 H 0.130 0.870 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.017 0.983 32 H 0.008 0.992 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.881 -7.049 -8.644 11.520 hybrid contribution 0.112 0.683 0.459 0.830 sum 2.993 -6.366 -8.185 10.793 Atomic orbital electron populations 1.22100 0.92874 1.02848 1.03282 1.22076 0.96154 0.96701 0.83178 0.87785 1.45225 1.54551 1.29105 1.09792 1.16153 0.79402 0.81736 0.83356 1.90929 1.55249 1.47653 1.58870 1.45201 1.55625 1.32488 1.04933 1.21254 0.92552 0.87649 0.94197 0.87477 1.22620 0.99055 1.03002 0.94879 1.23026 0.98952 0.95523 0.96097 1.20833 0.97864 0.93430 1.00421 1.18906 0.94372 0.92632 0.94600 1.21708 0.93687 1.01515 1.40941 0.92050 1.25877 0.95783 1.01639 0.96164 1.70075 1.08814 1.30850 1.47510 0.85632 0.78457 0.78725 0.79024 1.19116 1.21258 1.19479 0.91897 0.91270 0.90666 0.72264 0.72463 0.86066 0.86963 0.92157 0.90876 0.98320 0.99219 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.43 71.98 0.61 -2.48 16 2 C 0.12 2.62 4.38 45.26 0.20 2.81 16 3 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 4 N -0.72 -15.96 6.03 -456.75 -2.75 -18.71 16 5 C 0.69 19.60 8.92 179.57 1.60 21.20 16 6 O -0.64 -23.51 18.05 -4.00 -0.07 -23.58 16 7 N -0.72 -17.05 6.02 -460.33 -2.77 -19.82 16 8 C 0.15 3.40 3.67 44.51 0.16 3.56 16 9 H 0.11 2.54 5.46 -2.38 -0.01 2.53 16 10 C -0.18 -4.18 6.98 25.65 0.18 -4.00 16 11 C -0.12 -3.31 9.51 25.65 0.24 -3.07 16 12 C -0.09 -3.10 5.26 29.85 0.16 -2.95 16 13 C 0.03 1.53 4.96 29.85 0.15 1.68 16 14 C -0.54 -28.66 9.11 25.60 0.23 -28.43 16 15 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 16 C 0.00 0.18 5.46 84.66 0.46 0.64 16 17 N -0.93 -54.36 13.29 21.45 0.28 -54.07 16 18 Si 0.96 42.28 29.54 68.60 2.03 44.31 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H 0.06 1.26 6.97 -2.39 -0.02 1.24 16 23 H 0.07 1.65 7.76 -2.39 -0.02 1.63 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.43 7.87 8.96 -92.72 -0.83 7.04 16 26 H 0.43 9.00 8.96 -92.71 -0.83 8.17 16 27 H 0.12 2.65 7.39 -2.91 -0.02 2.63 16 28 H 0.11 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.07 2.37 5.30 -2.39 -0.01 2.35 16 31 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -66.15 276.54 0.17 -65.98 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -0.54 Total: 16.94 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 3.99 Total: -11.03 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -5.24 Total: -92.61 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.07 Total: -23.58 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -66.15 0.17 -65.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308367981.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.695 kcal (2) G-P(sol) polarization free energy of solvation -66.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds