Wall clock time and date at job start Mon Mar 30 2020 03:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 120.00116 * 2 1 4 4 N 1.46896 * 109.47040 * 124.99931 * 3 2 1 5 5 C 1.46900 * 111.00229 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47483 * 179.97438 * 5 4 3 7 7 O 1.21295 * 119.99694 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00413 * 179.97438 * 6 5 4 9 9 C 1.37087 * 120.00334 * 180.02562 * 8 6 5 10 10 H 1.08005 * 120.00318 * 223.48639 * 9 8 6 11 11 C 1.38950 * 120.00068 * 43.48857 * 9 8 6 12 12 N 1.31405 * 120.00222 * 22.95212 * 11 9 8 13 13 Si 1.86803 * 120.00029 * 202.95534 * 11 9 8 14 14 H 1.48500 * 109.47235 * 179.97438 * 13 11 9 15 15 H 1.48497 * 109.47108 * 299.99910 * 13 11 9 16 16 H 1.48503 * 109.46994 * 59.99890 * 13 11 9 17 17 C 1.46508 * 119.99419 * 0.02562 * 8 6 5 18 18 C 1.53002 * 117.49453 * 187.14975 * 17 8 6 19 19 C 1.53004 * 60.00148 * 252.51359 * 18 17 8 20 20 H 1.07994 * 119.99958 * 179.97438 * 1 2 3 21 21 H 1.07994 * 119.99787 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.00048 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.46710 * 5.00340 * 3 2 1 24 24 H 1.09004 * 109.47338 * 245.00376 * 3 2 1 25 25 H 1.00901 * 110.99936 * 56.04787 * 4 3 2 26 26 H 1.09005 * 109.46806 * 60.00067 * 5 4 3 27 27 H 1.09002 * 109.47033 * 300.00378 * 5 4 3 28 28 H 0.97003 * 119.99956 * 6.12342 * 12 11 9 29 29 H 1.08999 * 115.55190 * 332.85938 * 17 8 6 30 30 H 1.08996 * 117.49764 * 0.02562 * 18 17 8 31 31 H 1.08999 * 117.49659 * 145.02224 * 18 17 8 32 32 H 1.08998 * 117.50051 * 252.51877 * 19 18 17 33 33 H 1.09000 * 117.51908 * 107.48332 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.7497 2.5927 1.1670 6 6 4.6935 2.5838 2.3418 7 8 4.7349 1.6216 3.0791 8 7 5.4923 3.6445 2.5725 9 6 6.3513 3.6362 3.6409 10 1 6.4520 4.5156 4.2598 11 6 7.0925 2.4964 3.9276 12 7 7.3345 1.6152 2.9833 13 14 7.7448 2.2166 5.6555 14 1 8.4972 0.9371 5.6995 15 1 8.6468 3.3349 6.0312 16 1 6.6086 2.1552 6.6097 17 6 5.4426 4.8064 1.6815 18 6 6.4865 5.9047 1.8940 19 6 5.0291 6.1473 2.2915 20 1 -0.5400 -0.9353 -0.0004 21 1 -0.5399 0.9353 0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 1.3586 2.1316 0.0896 24 1 2.6213 1.4027 -0.9314 25 1 3.6193 0.5387 1.1092 26 1 3.0561 3.4279 1.2649 27 1 4.3191 2.6996 0.2437 28 1 7.0734 1.8013 2.0678 29 1 5.1289 4.6009 0.6580 30 1 7.2104 5.7625 2.6963 31 1 6.8599 6.4219 1.0101 32 1 4.4436 6.8240 1.6692 33 1 4.7936 6.1648 3.3556 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308503728.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:09 Heat of formation + Delta-G solvation = 26.432096 kcal Electronic energy + Delta-G solvation = -15505.536628 eV Core-core repulsion = 12954.310649 eV Total energy + Delta-G solvation = -2551.225979 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.86925 -36.65950 -35.77573 -33.14977 -32.48866 -30.78600 -27.38248 -24.67536 -23.00460 -21.77193 -21.30118 -20.02784 -19.19413 -16.80744 -16.44261 -15.60895 -15.08354 -14.82251 -14.07598 -13.89463 -13.70952 -13.52875 -12.90917 -12.69698 -12.14277 -11.85090 -11.39009 -11.08567 -10.96094 -10.85955 -10.71139 -10.22929 -10.06941 -9.87024 -9.70139 -9.46610 -8.64760 -8.20378 -7.88587 -7.31355 -6.35599 -3.87258 2.30610 3.43373 3.55206 3.69033 3.93979 4.24606 4.56400 4.68762 4.90590 5.00577 5.23119 5.32413 5.46092 5.49802 5.59641 5.67440 5.73337 5.79703 5.83664 5.89934 6.10397 6.15219 6.33649 6.62726 6.65142 6.79672 6.86896 7.25950 7.72217 7.91469 8.40776 8.84441 9.20510 9.57856 10.12201 10.91949 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.025416 B = 0.008407 C = 0.006697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.413926 B = 3329.740189 C = 4179.766524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.141 4.141 3 C 0.083 3.917 4 N -0.667 5.667 5 C 0.049 3.951 6 C 0.461 3.539 7 O -0.522 6.522 8 N -0.434 5.434 9 C -0.428 4.428 10 H 0.069 0.931 11 C 0.040 3.960 12 N -0.846 5.846 13 Si 1.076 2.924 14 H -0.282 1.282 15 H -0.289 1.289 16 H -0.285 1.285 17 C 0.066 3.934 18 C -0.173 4.173 19 C -0.202 4.202 20 H 0.096 0.904 21 H 0.095 0.905 22 H 0.108 0.892 23 H 0.073 0.927 24 H 0.034 0.966 25 H 0.351 0.649 26 H 0.084 0.916 27 H 0.039 0.961 28 H 0.268 0.732 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 3.558 -7.063 10.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.160 4.160 3 C -0.046 4.046 4 N -0.300 5.300 5 C -0.084 4.084 6 C 0.249 3.751 7 O -0.399 6.399 8 N -0.157 5.157 9 C -0.554 4.554 10 H 0.087 0.913 11 C -0.172 4.172 12 N -0.477 5.477 13 Si 0.903 3.097 14 H -0.207 1.207 15 H -0.216 1.216 16 H -0.211 1.211 17 C -0.040 4.040 18 C -0.211 4.211 19 C -0.241 4.241 20 H 0.114 0.886 21 H 0.113 0.887 22 H 0.126 0.874 23 H 0.091 0.909 24 H 0.052 0.948 25 H 0.171 0.829 26 H 0.103 0.897 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.660 2.152 -5.287 8.772 hybrid contribution -0.280 1.198 -1.905 2.267 sum -6.940 3.349 -7.192 10.541 Atomic orbital electron populations 1.23743 0.95764 1.01626 1.01719 1.22869 0.96076 0.98202 0.98831 1.21109 0.95544 0.95895 0.92010 1.60141 1.22697 1.04527 1.42623 1.21819 0.96073 0.93257 0.97258 1.19998 0.82131 0.85448 0.87565 1.90621 1.67789 1.33155 1.48370 1.42983 1.34514 1.13439 1.24728 1.19728 1.24418 1.04008 1.07252 0.91297 1.26165 0.93345 0.92678 1.05046 1.70580 1.38567 1.36752 1.01818 0.83433 0.75987 0.76052 0.74261 1.20716 1.21613 1.21144 1.21777 1.03909 0.84435 0.93838 1.23079 0.92758 1.01889 1.03365 1.23261 0.98185 1.00847 1.01838 0.88565 0.88671 0.87391 0.90857 0.94821 0.82906 0.89746 0.94352 0.92181 0.88070 0.87354 0.89803 0.89759 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.18 14.32 29.01 0.42 -1.76 16 2 C -0.14 -1.84 9.78 -36.02 -0.35 -2.19 16 3 C 0.08 1.19 6.13 -4.98 -0.03 1.16 16 4 N -0.67 -12.39 6.11 -116.34 -0.71 -13.10 16 5 C 0.05 0.95 4.74 -4.98 -0.02 0.92 16 6 C 0.46 11.73 6.47 -10.99 -0.07 11.66 16 7 O -0.52 -15.59 14.06 5.54 0.08 -15.52 16 8 N -0.43 -10.91 2.60 -107.72 -0.28 -11.19 16 9 C -0.43 -11.89 7.76 -14.94 -0.12 -12.01 16 10 H 0.07 1.89 7.43 -52.48 -0.39 1.50 16 11 C 0.04 1.16 4.22 -17.47 -0.07 1.09 16 12 N -0.85 -25.83 12.35 55.50 0.69 -25.15 16 13 Si 1.08 25.99 29.98 -169.99 -5.10 20.90 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 15 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 17 C 0.07 1.33 5.96 -67.92 -0.41 0.92 16 18 C -0.17 -3.15 9.81 -26.73 -0.26 -3.41 16 19 C -0.20 -3.51 10.30 -26.73 -0.28 -3.79 16 20 H 0.10 0.95 8.06 -52.49 -0.42 0.52 16 21 H 0.09 1.01 7.84 -52.49 -0.41 0.60 16 22 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 23 H 0.07 0.99 7.79 -51.93 -0.40 0.58 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.35 6.89 8.42 -39.29 -0.33 6.56 16 26 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 27 H 0.04 0.69 7.57 -51.93 -0.39 0.29 16 28 H 0.27 8.23 7.42 -40.82 -0.30 7.92 16 29 H 0.10 1.77 6.84 -51.93 -0.35 1.41 16 30 H 0.11 2.22 6.82 -51.93 -0.35 1.87 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 282.83 15.07 4.26 4.26 Total: -1.00 -32.94 282.83 -6.95 -39.89 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.70 Total: 7.30 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -1.19 Total: -7.40 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.31 Total: -49.44 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.08 Total: -15.52 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.10 Total: 20.90 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.94 -6.95 -39.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308503728.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.326 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds